FFCP PHASE1:Hg19::chr12:7848349..7848359,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9573|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4218|TSSclassifier=S|UniProt=Q9NR23|association_with_transcript=0bp_to_NM_020634,uc001qte.2_5end|coexpression_cluster_id=C157|description=CAGE_peak_2_at_GDF3_5end|id=chr12:7848349..7848359,-|ontology_enrichment_celltype=CL:0002322!1.86e-34!5;CL:0000039!1.87e-16!7;CL:0000586!1.87e-16!7;CL:0000115!6.72e-14!35;CL:0000540!8.17e-11!6;CL:0000031!8.17e-11!6;CL:0000404!8.17e-11!6;CL:0002078!9.05e-11!44;CL:0002618!8.97e-10!3;CL:0002139!2.08e-09!24;CL:0000071!4.71e-09!18;CL:0002546!4.71e-09!18;CL:0000047!3.16e-08!8;CL:0000213!5.37e-08!57;CL:0000215!5.37e-08!57;CL:0000946!9.94e-08!1;CL:0000786!9.94e-08!1;CL:0000980!9.94e-08!1;CL:0000666!1.39e-07!4;CL:0002188!1.39e-07!4;CL:0000148!8.57e-07!10;CL:0000541!8.57e-07!10|ontology_enrichment_celltype_v019=CL:0002322;8.72e-66;5!CL:0000039;2.84e-31;7!CL:0000586;2.84e-31;7!CL:0002321;4.73e-22;15!CL:0000148;1.35e-12;10!CL:0000540;9.06e-10;6!CL:0000404;9.06e-10;6!CL:0000147;3.69e-09;14!CL:0002545;6.36e-08;2!CL:0002262;8.32e-08;2!CL:1000398;8.32e-08;2|ontology_enrichment_celltype_v019_2=CL:0002322,9.33e-66,5;CL:0000039,2.84e-31,7;CL:0000586,2.84e-31,7;CL:0000148,1.27e-12,10;CL:0000541,1.27e-12,10;CL:0000540,9.68e-10,6;CL:0000031,9.68e-10,6;CL:0000404,9.68e-10,6;CL:0000147,3.54e-09,14;CL:0002545,6.15e-08,2;CL:0002262,8.04e-08,2;CL:1000398,8.04e-08,2;CL:0000047,1.60e-07,8|ontology_enrichment_development_v019=UBERON:0009117;5.15e-22;10!UBERON:0005564;5.15e-22;10!CL:0000031;9.06e-10;6|ontology_enrichment_disease=DOID:9119!5.05e-08!1;DOID:3095!8.53e-08!22;DOID:2994!8.53e-08!22|ontology_enrichment_disease_v019=DOID:3095;2.76e-15;22!DOID:2994;2.76e-15;22|ontology_enrichment_disease_v019_2=DOID:3095,2.80e-15,22;DOID:2994,2.80e-15,22|ontology_enrichment_uberon=UBERON:0000473!1.48e-21!8;UBERON:0003135!1.24e-15!11;UBERON:0001986!4.71e-09!18;UBERON:0004638!4.71e-09!18;UBERON:0004852!4.71e-09!18;UBERON:0000991!4.43e-08!21;UBERON:0009196!4.43e-08!21;UBERON:0009117!4.43e-08!21;UBERON:0005564!4.43e-08!21;UBERON:0004176!1.06e-07!22;UBERON:0003101!1.06e-07!22;UBERON:0000079!1.06e-07!22;UBERON:0000487!2.29e-07!22|ontology_enrichment_uberon_v019=UBERON:0000473;2.03e-27;8!UBERON:0003135;4.79e-20;11!UBERON:0000922;2.25e-13;49!UBERON:0000991;1.22e-10;21!UBERON:0003101;3.64e-10;22!UBERON:0000079;3.64e-10;22!UBERON:0005800;6.36e-08;2!UBERON:0001515;6.36e-08;2!UBERON:0001281;8.32e-08;2!UBERON:0003497;8.32e-08;2!UBERON:0003909;8.32e-08;2!UBERON:0003835;8.32e-08;2|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.03e-27,8;UBERON:0003135,4.79e-20,11;UBERON:0000991,1.22e-10,21;UBERON:0009196,1.22e-10,21;UBERON:0009117,1.22e-10,21;UBERON:0005564,1.22e-10,21;UBERON:0004176,3.64e-10,22;UBERON:0003101,3.64e-10,22;UBERON:0000079,3.64e-10,22;UBERON:0005800,6.15e-08,2;UBERON:0001515,6.15e-08,2;UBERON:0001281,8.04e-08,2;UBERON:0003497,8.04e-08,2;UBERON:0003909,8.04e-08,2;UBERON:0003835,8.04e-08,2|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0.24406205754817,2.20597848207521,0,0.446498641420399,0.44905874525234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07355300420312,2.12047629314376,4.88014560051977,2.48786532036889,6.05570042101508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4763109092493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,1.54227252690289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66614393599564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.96669520483119,0.962776056180637,1.24632101408756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.437119121007915,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9573 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4218 | |||
|TSSclassifier=S | |||
|UniProt=Q9NR23 | |||
|association_with_transcript=0bp_to_NM_020634,uc001qte.2_5end | |||
|coexpression_cluster_id=C157 | |||
|description=CAGE_peak_2_at_GDF3_5end | |||
|id=chr12:7848349..7848359,- | |||
|ontology_enrichment_celltype=CL:0002322!1.86e-34!5;CL:0000039!1.87e-16!7;CL:0000586!1.87e-16!7;CL:0000115!6.72e-14!35;CL:0000540!8.17e-11!6;CL:0000031!8.17e-11!6;CL:0000404!8.17e-11!6;CL:0002078!9.05e-11!44;CL:0002618!8.97e-10!3;CL:0002139!2.08e-09!24;CL:0000071!4.71e-09!18;CL:0002546!4.71e-09!18;CL:0000047!3.16e-08!8;CL:0000213!5.37e-08!57;CL:0000215!5.37e-08!57;CL:0000946!9.94e-08!1;CL:0000786!9.94e-08!1;CL:0000980!9.94e-08!1;CL:0000666!1.39e-07!4;CL:0002188!1.39e-07!4;CL:0000148!8.57e-07!10;CL:0000541!8.57e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0002322;8.72e-66;5!CL:0000039;2.84e-31;7!CL:0000586;2.84e-31;7!CL:0002321;4.73e-22;15!CL:0000148;1.35e-12;10!CL:0000540;9.06e-10;6!CL:0000404;9.06e-10;6!CL:0000147;3.69e-09;14!CL:0002545;6.36e-08;2!CL:0002262;8.32e-08;2!CL:1000398;8.32e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,9.33e-66,5;CL:0000039,2.84e-31,7;CL:0000586,2.84e-31,7;CL:0000148,1.27e-12,10;CL:0000541,1.27e-12,10;CL:0000540,9.68e-10,6;CL:0000031,9.68e-10,6;CL:0000404,9.68e-10,6;CL:0000147,3.54e-09,14;CL:0002545,6.15e-08,2;CL:0002262,8.04e-08,2;CL:1000398,8.04e-08,2;CL:0000047,1.60e-07,8 | |||
|ontology_enrichment_development_v019=UBERON:0009117;5.15e-22;10!UBERON:0005564;5.15e-22;10!CL:0000031;9.06e-10;6 | |||
|ontology_enrichment_disease=DOID:9119!5.05e-08!1;DOID:3095!8.53e-08!22;DOID:2994!8.53e-08!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;2.76e-15;22!DOID:2994;2.76e-15;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,2.80e-15,22;DOID:2994,2.80e-15,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!1.48e-21!8;UBERON:0003135!1.24e-15!11;UBERON:0001986!4.71e-09!18;UBERON:0004638!4.71e-09!18;UBERON:0004852!4.71e-09!18;UBERON:0000991!4.43e-08!21;UBERON:0009196!4.43e-08!21;UBERON:0009117!4.43e-08!21;UBERON:0005564!4.43e-08!21;UBERON:0004176!1.06e-07!22;UBERON:0003101!1.06e-07!22;UBERON:0000079!1.06e-07!22;UBERON:0000487!2.29e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;2.03e-27;8!UBERON:0003135;4.79e-20;11!UBERON:0000922;2.25e-13;49!UBERON:0000991;1.22e-10;21!UBERON:0003101;3.64e-10;22!UBERON:0000079;3.64e-10;22!UBERON:0005800;6.36e-08;2!UBERON:0001515;6.36e-08;2!UBERON:0001281;8.32e-08;2!UBERON:0003497;8.32e-08;2!UBERON:0003909;8.32e-08;2!UBERON:0003835;8.32e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.03e-27,8;UBERON:0003135,4.79e-20,11;UBERON:0000991,1.22e-10,21;UBERON:0009196,1.22e-10,21;UBERON:0009117,1.22e-10,21;UBERON:0005564,1.22e-10,21;UBERON:0004176,3.64e-10,22;UBERON:0003101,3.64e-10,22;UBERON:0000079,3.64e-10,22;UBERON:0005800,6.15e-08,2;UBERON:0001515,6.15e-08,2;UBERON:0001281,8.04e-08,2;UBERON:0003497,8.04e-08,2;UBERON:0003909,8.04e-08,2;UBERON:0003835,8.04e-08,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0.24406205754817,2.20597848207521,0,0.446498641420399,0.44905874525234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07355300420312,2.12047629314376,4.88014560051977,2.48786532036889,6.05570042101508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4763109092493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,1.54227252690289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66614393599564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.96669520483119,0.962776056180637,1.24632101408756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.437119121007915,0,0,0,0,0,0,0,0,0.128915775947154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31118686356435,0,19.4798664807185,21.911827231776,18.378979906969,55.4063661836149,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@GDF3 | |||
}} |
Revision as of 00:33, 11 September 2013
Short description: | p2@GDF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_GDF3_5end |
Coexpression cluster: | C157_testicular_H9_testis_iPS_teratocarcinoma_colon_trachea |
Association with transcript: | 0bp_to_NM_020634, uc001qte.2_5end |
EntrezGene: | GDF3 |
HGNC: | 4218 |
UniProt: | Q9NR23 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 9.33e-66 | 5 |
germ line cell | 2.84e-31 | 7 |
germ cell | 2.84e-31 | 7 |
melanocyte | 1.27e-12 | 10 |
melanoblast | 1.27e-12 | 10 |
neuron | 9.68e-10 | 6 |
neuroblast | 9.68e-10 | 6 |
electrically signaling cell | 9.68e-10 | 6 |
pigment cell | 3.54e-09 | 14 |
thoracic aorta endothelial cell | 6.15e-08 | 2 |
endothelial cell of sinusoid | 8.04e-08 | 2 |
endothelial cell of hepatic sinusoid | 8.04e-08 | 2 |
neuronal stem cell | 1.60e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
testis | 2.03e-27 | 8 |
male reproductive organ | 4.79e-20 | 11 |
gonad | 1.22e-10 | 21 |
indifferent external genitalia | 1.22e-10 | 21 |
indifferent gonad | 1.22e-10 | 21 |
gonad primordium | 1.22e-10 | 21 |
external genitalia | 3.64e-10 | 22 |
male organism | 3.64e-10 | 22 |
male reproductive system | 3.64e-10 | 22 |
segment of aorta | 6.15e-08 | 2 |
thoracic aorta | 6.15e-08 | 2 |
hepatic sinusoid | 8.04e-08 | 2 |
abdomen blood vessel | 8.04e-08 | 2 |
sinusoid | 8.04e-08 | 2 |
abdominal segment blood vessel | 8.04e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 2.80e-15 | 22 |
germ cell cancer | 2.80e-15 | 22 |
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