FFCP PHASE1:Hg19::chr12:111051902..111051975,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=79600|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=26113|TSSclassifier=S|UniProt=Q2MV58,A8MW34,E9PIB8,E9PN24,E9PNE4,E9PJ71,E9PR69,F8VX18,F8VZS6,Q05BR9|association_with_transcript=0bp_to_ENST00000377654,ENST00000397655,ENST00000397656,ENST00000397657,ENST00000397659,ENST00000464809,ENST00000465802,ENST00000471804,ENST00000478122,ENST00000480648,ENST00000481720,ENST00000489258,ENST00000490514,ENST00000495659,ENST00000498072,ENST00000546643,ENST00000547868,ENST00000548095,ENST00000549834,NM_001173975,uc001tri.2,uc001trj.1,uc001trk.3_5end|description=CAGE_peak_1_at_TCTN1_5end|id=chr12:111051902..111051975,+|ontology_enrichment_celltype=CL:0000055!1.30e-13!180;CL:0000057!1.66e-08!75;CL:0000499!6.21e-08!27|ontology_enrichment_celltype_v019=CL:0000499;1.97e-08;28|ontology_enrichment_celltype_v019_2=CL:0000057,6.42e-09,76;CL:0000499,1.78e-08,28|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000475!8.27e-22!365;UBERON:0000481!6.08e-15!347;UBERON:0000468!4.91e-11!659;UBERON:0000477!1.32e-09!286;UBERON:0004111!1.60e-09!241;UBERON:0000483!1.78e-09!309;UBERON:0000119!2.55e-09!312;UBERON:0002100!1.08e-08!216;UBERON:0000467!1.13e-08!625;UBERON:0000480!1.77e-08!626;UBERON:0000062!2.33e-08!511;UBERON:0004121!2.51e-08!169;UBERON:0000924!2.73e-08!173;UBERON:0006601!2.73e-08!173;UBERON:0000064!3.34e-08!219;UBERON:0000033!1.82e-07!123;UBERON:0000025!1.95e-07!194;UBERON:0003075!6.36e-07!86;UBERON:0007284!6.36e-07!86;UBERON:0002346!8.30e-07!90;UBERON:0000153!9.81e-07!129;UBERON:0007811!9.81e-07!129|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0004111,1.10e-09,240;UBERON:0000483,1.19e-09,306;UBERON:0000119,1.72e-09,309;UBERON:0004121,1.46e-08,171;UBERON:0000924,1.46e-08,171;UBERON:0006601,1.46e-08,171;UBERON:0002100,2.26e-08,199;UBERON:0010314,5.04e-08,132;UBERON:0000025,2.65e-07,192;UBERON:0003075,5.20e-07,82;UBERON:0007284,5.20e-07,82;UBERON:0002346,6.98e-07,86|phase1_expression=42.1493839907691,32.7573801553204,56.6636704465804,41.0300523247835,55.870136803411,60.1913581629254,22.796989035148,28.4273943042074,50.4088262425688,13.2696325710815,4.18680700783456,29.2711438654431,32.9708722785567,25.2483360038495,28.1687769368728,35.6332327619441,28.9293373451509,25.5608531635581,31.2276991225924,27.7022380672773,26.5200898617529,39.181840184761,28.9098347002367,21.2155358862971,25.6106984773398,2.9801228241701,2.13461532569859,3.7781175030566,1.96682138424452,1.15148819429164,3.71558695958582,8.27479102031034,10.843413076017,14.7901604066715,7.51431845628926,10.9470309015315,10.2760153767197,2.21598163412751,2.80762226458198,3.03815219002193,15.2262522483149,20.0814072931767,20.0908942754665,2.18097358169347,0.755751887377619,1.21292030593908,0.464858073811369,0.411167888021826,1.85823822537062,1.7261543539329,1.2808035326455,1.6553756092201,2.41321976515633,1.93645405075148,0,1.50593871634084,1.09162460023138,0.224723484445085,1.22433556948361,0.641858054152187,0.639337125799041,1.64925650093358,2.99195486432448,0,0.870627715885752,1.13477044938228,1.24564449799115,1.25624332628372,1.5644487552606,0.868755378820466,1.81619850790011,1.10483290796269,0.316462387440884,1.69004229049553,2.76385589954557,3.14487968262564,2.80821577866238,3.90459921387916,1.12507910687956,1.99508920618874,2.58591680358817,2.55729815270488,8.79981222306614,12.0150494477669,8.89509253863555,12.8019066769952,7.60752375368424,9.77079147922622,12.5598525829124,8.58648379081828,11.384259382189,6.45960908308033,7.64546456250458,10.5737062863221,4.48406850385229,11.3255156453283,3.93419540227666,3.53709686474248,2.46721798799411,0.83593247695339,6.19252306603822,6.62826928028627,3.89653456815823,2.56244050835899,1.47302953737419,1.32920336750173,1.35401931882508,0.896639238079726,1.1705341280389,4.27538551969558,3.59255023121603,3.76744011455568,6.22803565280654,7.49114318651197,9.40819714244791,3.05935225283429,3.06576394881537,2.40539211837841,1.77113784413652,3.50421955756506,3.25541726928209,1.90090408889675,3.91495309602209,4.35154477925022,2.49861453104692,4.02521328474829,0.821127996921047,3.83052812126992,4.01160293675261,3.47578569318718,48.7613732627923,26.8280343881454,30.0477020332296,42.2883808289943,48.1284394210454,64.7463939754882,55.6700162935769,82.7279279514481,24.6735872798217,24.8336925158072,22.2222007803609,43.4850530652406,30.236508928281,17.7976532536526,6.16640047943898,9.5771355514597,7.57860374957531,5.96226560763355,5.14795419702115,5.57186251994347,9.93812036833526,8.60234595106124,16.6627440771645,9.61023501270816,17.618976320816,10.1793675517825,9.19577852761967,17.5723396235144,28.8170672776235,21.0873986041742,13.2933674646019,13.6848979029332,32.2161915963584,15.0741862941806,21.0636906449257,11.0731663072259,14.8189385933272,13.8512120994486,7.66583187329416,15.1882505530901,14.839341258363,6.589020871803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39.4018875981453,18.5262884506896,24.3759155577214,58.7328427019437,16.5686382254424,15.5154653250694,39.3350017266615,26.6250690688646,17.193308247128,11.0000811682197,22.6005246163934,24.1005420533784,21.2068015701759,23.4323429584154,18.1884380921042,21.3077122251527,19.1441183156377,12.061670870858,18.8560247787932,14.0696995487696,33.2182311862948,36.9634266756018,33.9646559441012,95.9005654693878,82.641375460521,17.2082598115519,5.07029545245429,75.9691881807764,13.322067663459,20.2580142573575,17.9654638143632,25.694453837068,39.403532610958,31.5802335731164,19.0585071053377,36.5263488203798,32.6050662740118,36.7868799673029,45.6735117288834,16.2754020084708,39.9870503266351,11.996220788878,28.8616091302891,44.1370429667268,36.3630356210113,35.9455024143328,21.9415952998342,24.1397281490353,19.9399367136429,56.3104776753936,39.4063813895766,45.2901323069907,40.1326354370522,33.8921958347311,0,3.65753774946808,14.2434344181337,12.0115484021809,28.995360783455,21.8569946876613,29.0084934693011,14.9213081371026,53.8708011222386,14.5700445830258,2.74851291863573,13.7376187645673,8.41198323376597,18.7961222033403,39.0363355980064,25.7405737841601,12.0195039021829,19.0419213101497,19.0109696209335,32.5444910239218,36.0245483138172,9.86831138788463,13.3427828105305,9.59435096879318,36.4250034755541,15.8802692272061,56.8911289826203,20.4494188709025,18.8079006195862,18.9208249759916,21.1413893338867,22.5051832531928,28.7991455624649,20.6320467801006,37.1995018166751,94.2838282408093,36.3406312183983,12.3643096338377,8.08565232531347,18.8780766507041,5.20143031684107,9.08539177902906,2.94063678511504,7.0198111001865,51.0748425990934,67.2589966692008,19.0708971075519,21.8243621268599,23.6689719910089,52.6122393534866,10.786347942613,10.6147761445917,16.1469882116083,60.2738588894222,74.3791255366247,11.321270890642,18.1383649575199,13.4704106029175,48.6993774616272,40.9172238551596,14.0827654696986,16.2225565734127,38.614456457388,44.1041742343342,32.8497319364836,26.6486348318649,48.0137490412571,33.9535954834611,18.7184628039654,5.77023286145819|short_description=p1@TCTN1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=79600 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26113 | |||
|TSSclassifier=S | |||
|UniProt=Q2MV58,A8MW34,E9PIB8,E9PN24,E9PNE4,E9PJ71,E9PR69,F8VX18,F8VZS6,Q05BR9 | |||
|association_with_transcript=0bp_to_ENST00000377654,ENST00000397655,ENST00000397656,ENST00000397657,ENST00000397659,ENST00000464809,ENST00000465802,ENST00000471804,ENST00000478122,ENST00000480648,ENST00000481720,ENST00000489258,ENST00000490514,ENST00000495659,ENST00000498072,ENST00000546643,ENST00000547868,ENST00000548095,ENST00000549834,NM_001173975,uc001tri.2,uc001trj.1,uc001trk.3_5end | |||
|description=CAGE_peak_1_at_TCTN1_5end | |||
|id=chr12:111051902..111051975,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.30e-13!180;CL:0000057!1.66e-08!75;CL:0000499!6.21e-08!27 | |||
|ontology_enrichment_celltype_v019=CL:0000499;1.97e-08;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.42e-09,76;CL:0000499,1.78e-08,28 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!8.27e-22!365;UBERON:0000481!6.08e-15!347;UBERON:0000468!4.91e-11!659;UBERON:0000477!1.32e-09!286;UBERON:0004111!1.60e-09!241;UBERON:0000483!1.78e-09!309;UBERON:0000119!2.55e-09!312;UBERON:0002100!1.08e-08!216;UBERON:0000467!1.13e-08!625;UBERON:0000480!1.77e-08!626;UBERON:0000062!2.33e-08!511;UBERON:0004121!2.51e-08!169;UBERON:0000924!2.73e-08!173;UBERON:0006601!2.73e-08!173;UBERON:0000064!3.34e-08!219;UBERON:0000033!1.82e-07!123;UBERON:0000025!1.95e-07!194;UBERON:0003075!6.36e-07!86;UBERON:0007284!6.36e-07!86;UBERON:0002346!8.30e-07!90;UBERON:0000153!9.81e-07!129;UBERON:0007811!9.81e-07!129 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004111,1.10e-09,240;UBERON:0000483,1.19e-09,306;UBERON:0000119,1.72e-09,309;UBERON:0004121,1.46e-08,171;UBERON:0000924,1.46e-08,171;UBERON:0006601,1.46e-08,171;UBERON:0002100,2.26e-08,199;UBERON:0010314,5.04e-08,132;UBERON:0000025,2.65e-07,192;UBERON:0003075,5.20e-07,82;UBERON:0007284,5.20e-07,82;UBERON:0002346,6.98e-07,86 | |||
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| |||
|short_description=p1@TCTN1 | |||
}} |
Revision as of 20:51, 10 September 2013
Short description: | p1@TCTN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_TCTN1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000377654, ENST00000397655, ENST00000397656, ENST00000397657, ENST00000397659, ENST00000464809, ENST00000465802, ENST00000471804, ENST00000478122, ENST00000480648, ENST00000481720, ENST00000489258, ENST00000490514, ENST00000495659, ENST00000498072, ENST00000546643, ENST00000547868, ENST00000548095, ENST00000549834, NM_001173975, uc001tri.2, uc001trj.1, uc001trk.3_5end |
EntrezGene: | TCTN1 |
HGNC: | 26113 |
UniProt: | Q2MV58A8MW34E9PIB8E9PN24E9PNE4E9PJ71E9PR69F8VX18F8VZS6Q05BR9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.42e-09 | 76 |
stromal cell | 1.78e-08 | 28 |
Ontology term | p-value | n |
---|---|---|
anatomical conduit | 1.10e-09 | 240 |
epithelium | 1.19e-09 | 306 |
cell layer | 1.72e-09 | 309 |
ectoderm-derived structure | 1.46e-08 | 171 |
ectoderm | 1.46e-08 | 171 |
presumptive ectoderm | 1.46e-08 | 171 |
trunk | 2.26e-08 | 199 |
structure with developmental contribution from neural crest | 5.04e-08 | 132 |
tube | 2.65e-07 | 192 |
neural plate | 5.20e-07 | 82 |
presumptive neural plate | 5.20e-07 | 82 |
neurectoderm | 6.98e-07 | 86 |
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