FFCP PHASE1:Hg19::chr13:39612176..39612258,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=80209|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=20291|TSSclassifier=S|UniProt=A6NJ97,Q86XN7|association_with_transcript=0bp_to_ENST00000350125,ENST00000352251,NM_025138,NM_170719,uc001uwy.2,uc001uwz.2_5end|description=CAGE_peak_1_at_PROSER1_5end|id=chr13:39612176..39612258,-|ontology_enrichment_celltype=CL:0000988!3.61e-24!182;CL:0000037!8.15e-24!172;CL:0000566!8.15e-24!172;CL:0000738!1.90e-22!140;CL:0002032!4.01e-22!165;CL:0000837!4.01e-22!165;CL:0002087!1.94e-21!119;CL:0002031!2.86e-20!124;CL:0000063!3.64e-13!578;CL:0000542!4.79e-13!53;CL:0000051!4.79e-13!53;CL:0000003!6.27e-13!722;CL:0000838!9.24e-13!52;CL:0000763!3.69e-10!112;CL:0000049!3.69e-10!112;CL:0000134!1.21e-09!358;CL:0000115!1.33e-09!35;CL:0000548!1.33e-09!679;CL:0000004!1.33e-09!679;CL:0000255!1.33e-09!679;CL:0000012!2.24e-09!682;CL:0000144!4.54e-09!625;CL:0002371!4.73e-09!591;CL:0000219!1.18e-08!390;CL:0002009!1.33e-08!65;CL:0000945!3.12e-08!24;CL:0000826!3.12e-08!24;CL:0000839!3.37e-08!70;CL:0002194!3.41e-08!63;CL:0000576!3.41e-08!63;CL:0000040!3.41e-08!63;CL:0000559!3.41e-08!63;CL:0002320!3.45e-08!365;CL:0000557!3.69e-08!71;CL:0002078!8.11e-08!44;CL:0000766!3.35e-07!76;CL:0002139!4.34e-07!24;CL:0000034!5.24e-07!444;CL:0000723!5.49e-07!436;CL:0000048!8.21e-07!430;CL:0000860!8.43e-07!45|ontology_enrichment_celltype_v019=CL:0000115;1.03e-08;36!CL:0000945;2.63e-08;24!CL:0000542;2.35e-07;53!CL:0002139;4.55e-07;24!CL:0002087;5.92e-07;104|ontology_enrichment_celltype_v019_2=CL:0000988,6.33e-24,177;CL:0000037,6.76e-24,168;CL:0000738,1.32e-22,136;CL:0002032,3.34e-22,161;CL:0000837,3.34e-22,161;CL:0002087,1.16e-21,115;CL:0002031,1.89e-20,120;CL:0000542,4.79e-13,53;CL:0000051,4.79e-13,53;CL:0000838,9.24e-13,52;CL:0000763,3.44e-10,108;CL:0000049,3.44e-10,108;CL:0000115,7.00e-10,36;CL:0000134,4.27e-09,354;CL:0002009,9.75e-09,61;CL:0002194,2.54e-08,59;CL:0000576,2.54e-08,59;CL:0000040,2.54e-08,59;CL:0000559,2.54e-08,59;CL:0000839,2.69e-08,66;CL:0000557,2.99e-08,67;CL:0000945,3.12e-08,24;CL:0000826,3.12e-08,24;CL:0000219,3.90e-08,386;CL:0002078,4.45e-08,45;CL:0002320,1.10e-07,361;CL:0000766,3.01e-07,72;CL:0002139,4.34e-07,24|ontology_enrichment_development_v019=CL:0000051;2.35e-07;53|ontology_enrichment_disease=DOID:2531!1.04e-07!51;DOID:0060083!1.04e-07!51|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:2531,1.04e-07,51;DOID:0060083,1.04e-07,51|ontology_enrichment_uberon=UBERON:0002193!1.85e-13!112;UBERON:0002390!2.42e-11!102;UBERON:0003061!2.42e-11!102;UBERON:0002405!9.92e-10!115;UBERON:0002371!1.66e-07!80;UBERON:0001474!2.46e-07!86;UBERON:0002384!4.23e-07!375|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.50e-13,108;UBERON:0002390,2.03e-11,98;UBERON:0003061,2.03e-11,98;UBERON:0002405,6.66e-11,93;UBERON:0002371,1.50e-07,76;UBERON:0001474,2.32e-07,82|phase1_expression=4.54195948176392,3.63970890614671,5.21531295155093,6.00439790118782,8.04529969969118,5.23403114460221,2.53299878168311,5.05375898741465,1.30592814099919,10.3208253330634,18.1428303672831,12.8880409556802,6.85794143393979,4.20805600064159,3.31397375727916,2.6893005858071,3.61616716814386,2.19093027116212,2.92759679274304,7.51038454268406,4.89601658986207,5.01527554364941,10.5907315238491,8.48621435451882,9.66678324879982,26.8975188232788,29.0636086652808,29.5165429926297,16.9146639045029,20.7267874972495,23.3772346207275,2.75826367343678,8.433765725791,6.65557218300218,14.641300909677,25.5904618477359,3.81680571135301,12.7418943962332,20.4555336419545,18.4459240108474,9.62836539231675,13.6035339727971,15.7121096256854,13.5220362064995,11.3362783106643,14.3124596100812,9.52959051313307,12.7462045286766,7.43295290148249,13.2338500468189,16.3942852178624,15.6078271726466,8.27389633767885,14.2006630388442,12.1883837934908,10.5415710143859,8.46009065179322,11.0114507378091,11.0190201253525,9.30694178520671,17.9014395223732,12.2044981069085,14.3613833487575,11.08184351385,6.67481248845743,4.53908179752912,6.22822248995575,15.8286659111748,18.7733850631273,16.0719745081786,5.44859552370032,9.57521853567668,6.32924774881769,12.6753171787165,11.4806321981124,11.1119082119439,16.2876515162418,13.6660972485771,19.4477959903467,13.1105862120974,13.5263340495381,14.6131323011707,10.5597746676794,7.09980194640771,7.11607403090844,14.5088275672612,14.0138595462604,16.66782075868,9.91567309177293,11.4486450544244,13.0918982895173,11.1575065980478,12.9972897562578,2.64342657158052,7.8471198817415,8.16490662802739,19.4742672412695,20.8295704257057,14.5977064289652,18.3905144929746,9.77766799900771,9.9424039204294,11.6896037044747,17.0457999034316,12.0788422064683,11.9628303075155,16.2482318259009,15.370958367081,12.4856973657483,12.8261565590867,16.0283010315792,16.808578972633,11.5663519266407,11.7717964359474,5.22677619024884,16.4298546911471,13.4127172760672,11.3397057009268,15.4342012131897,5.73417745783374,7.81300144627702,6.65316431113862,12.3471597643774,13.43859417121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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=80209 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20291 | |||
|TSSclassifier=S | |||
|UniProt=A6NJ97,Q86XN7 | |||
|association_with_transcript=0bp_to_ENST00000350125,ENST00000352251,NM_025138,NM_170719,uc001uwy.2,uc001uwz.2_5end | |||
|description=CAGE_peak_1_at_PROSER1_5end | |||
|id=chr13:39612176..39612258,- | |||
|ontology_enrichment_celltype=CL:0000988!3.61e-24!182;CL:0000037!8.15e-24!172;CL:0000566!8.15e-24!172;CL:0000738!1.90e-22!140;CL:0002032!4.01e-22!165;CL:0000837!4.01e-22!165;CL:0002087!1.94e-21!119;CL:0002031!2.86e-20!124;CL:0000063!3.64e-13!578;CL:0000542!4.79e-13!53;CL:0000051!4.79e-13!53;CL:0000003!6.27e-13!722;CL:0000838!9.24e-13!52;CL:0000763!3.69e-10!112;CL:0000049!3.69e-10!112;CL:0000134!1.21e-09!358;CL:0000115!1.33e-09!35;CL:0000548!1.33e-09!679;CL:0000004!1.33e-09!679;CL:0000255!1.33e-09!679;CL:0000012!2.24e-09!682;CL:0000144!4.54e-09!625;CL:0002371!4.73e-09!591;CL:0000219!1.18e-08!390;CL:0002009!1.33e-08!65;CL:0000945!3.12e-08!24;CL:0000826!3.12e-08!24;CL:0000839!3.37e-08!70;CL:0002194!3.41e-08!63;CL:0000576!3.41e-08!63;CL:0000040!3.41e-08!63;CL:0000559!3.41e-08!63;CL:0002320!3.45e-08!365;CL:0000557!3.69e-08!71;CL:0002078!8.11e-08!44;CL:0000766!3.35e-07!76;CL:0002139!4.34e-07!24;CL:0000034!5.24e-07!444;CL:0000723!5.49e-07!436;CL:0000048!8.21e-07!430;CL:0000860!8.43e-07!45 | |||
|ontology_enrichment_celltype_v019=CL:0000115;1.03e-08;36!CL:0000945;2.63e-08;24!CL:0000542;2.35e-07;53!CL:0002139;4.55e-07;24!CL:0002087;5.92e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,6.33e-24,177;CL:0000037,6.76e-24,168;CL:0000738,1.32e-22,136;CL:0002032,3.34e-22,161;CL:0000837,3.34e-22,161;CL:0002087,1.16e-21,115;CL:0002031,1.89e-20,120;CL:0000542,4.79e-13,53;CL:0000051,4.79e-13,53;CL:0000838,9.24e-13,52;CL:0000763,3.44e-10,108;CL:0000049,3.44e-10,108;CL:0000115,7.00e-10,36;CL:0000134,4.27e-09,354;CL:0002009,9.75e-09,61;CL:0002194,2.54e-08,59;CL:0000576,2.54e-08,59;CL:0000040,2.54e-08,59;CL:0000559,2.54e-08,59;CL:0000839,2.69e-08,66;CL:0000557,2.99e-08,67;CL:0000945,3.12e-08,24;CL:0000826,3.12e-08,24;CL:0000219,3.90e-08,386;CL:0002078,4.45e-08,45;CL:0002320,1.10e-07,361;CL:0000766,3.01e-07,72;CL:0002139,4.34e-07,24 | |||
|ontology_enrichment_development_v019=CL:0000051;2.35e-07;53 | |||
|ontology_enrichment_disease=DOID:2531!1.04e-07!51;DOID:0060083!1.04e-07!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:2531,1.04e-07,51;DOID:0060083,1.04e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0002193!1.85e-13!112;UBERON:0002390!2.42e-11!102;UBERON:0003061!2.42e-11!102;UBERON:0002405!9.92e-10!115;UBERON:0002371!1.66e-07!80;UBERON:0001474!2.46e-07!86;UBERON:0002384!4.23e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.50e-13,108;UBERON:0002390,2.03e-11,98;UBERON:0003061,2.03e-11,98;UBERON:0002405,6.66e-11,93;UBERON:0002371,1.50e-07,76;UBERON:0001474,2.32e-07,82 | |||
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| |||
|short_description=p1@PROSER1 | |||
}} |
Revision as of 02:11, 11 September 2013
Short description: | p1@PROSER1 |
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Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_PROSER1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000350125, ENST00000352251, NM_025138, NM_170719, uc001uwy.2, uc001uwz.2_5end |
EntrezGene: | PROSER1 |
HGNC: | 20291 |
UniProt: | A6NJ97Q86XN7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 6.33e-24 | 177 |
hematopoietic stem cell | 6.76e-24 | 168 |
leukocyte | 1.32e-22 | 136 |
hematopoietic oligopotent progenitor cell | 3.34e-22 | 161 |
hematopoietic multipotent progenitor cell | 3.34e-22 | 161 |
nongranular leukocyte | 1.16e-21 | 115 |
hematopoietic lineage restricted progenitor cell | 1.89e-20 | 120 |
lymphocyte | 4.79e-13 | 53 |
common lymphoid progenitor | 4.79e-13 | 53 |
lymphoid lineage restricted progenitor cell | 9.24e-13 | 52 |
myeloid cell | 3.44e-10 | 108 |
common myeloid progenitor | 3.44e-10 | 108 |
endothelial cell | 7.00e-10 | 36 |
mesenchymal cell | 4.27e-09 | 354 |
macrophage dendritic cell progenitor | 9.75e-09 | 61 |
monopoietic cell | 2.54e-08 | 59 |
monocyte | 2.54e-08 | 59 |
monoblast | 2.54e-08 | 59 |
promonocyte | 2.54e-08 | 59 |
myeloid lineage restricted progenitor cell | 2.69e-08 | 66 |
granulocyte monocyte progenitor cell | 2.99e-08 | 67 |
lymphocyte of B lineage | 3.12e-08 | 24 |
pro-B cell | 3.12e-08 | 24 |
motile cell | 3.90e-08 | 386 |
meso-epithelial cell | 4.45e-08 | 45 |
connective tissue cell | 1.10e-07 | 361 |
myeloid leukocyte | 3.01e-07 | 72 |
endothelial cell of vascular tree | 4.34e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.50e-13 | 108 |
hematopoietic system | 2.03e-11 | 98 |
blood island | 2.03e-11 | 98 |
immune system | 6.66e-11 | 93 |
bone marrow | 1.50e-07 | 76 |
bone element | 2.32e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 1.04e-07 | 51 |
immune system cancer | 1.04e-07 | 51 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.