FFCP PHASE1:Hg19::chr15:41136263..41136291,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6692|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11246|TSSclassifier=S|UniProt=F5H877,O43278|association_with_transcript=17bp_to_ENST00000536281,NM_003710,NM_181642,uc001zna.2,uc001znb.2_5end|coexpression_cluster_id=C3485|description=CAGE_peak_4_at_SPINT1_5end|id=chr15:41136263..41136291,+|ontology_enrichment_celltype=CL:0000066!6.12e-35!254;CL:0002076!7.74e-18!43;CL:0000223!1.29e-12!59;CL:1000497!2.64e-08!18;CL:0002518!2.64e-08!18;CL:0002368!3.01e-08!13;CL:0002251!7.80e-08!21;CL:1000449!1.08e-07!16;CL:0002077!1.43e-07!33;CL:1000507!1.67e-07!12;CL:1000494!1.67e-07!12|ontology_enrichment_celltype_v019=CL:0002076;5.43e-18;42!CL:1000507;5.06e-12;10!CL:1000494;5.06e-12;10!CL:0002368;8.01e-12;13!CL:1000497;7.62e-11;17!CL:0002518;7.62e-11;17!CL:0002251;3.09e-10;20!CL:1000449;5.16e-10;15!CL:0002077;3.95e-08;34!CL:0002202;4.54e-08;9!CL:0002632;4.54e-08;9!CL:0002159;5.24e-08;14!CL:0000075;3.50e-07;27!CL:0002681;5.88e-07;12!CL:0002584;5.88e-07;12!CL:0000039;5.94e-07;7!CL:0000586;5.94e-07;7|ontology_enrichment_celltype_v019_2=CL:0000066,1.07e-40,253;CL:0002076,3.89e-23,42;CL:0000223,1.47e-16,58;CL:1000507,4.67e-12,10;CL:1000494,4.67e-12,10;CL:0002368,8.88e-12,13;CL:1000497,6.16e-11,17;CL:0002518,6.16e-11,17;CL:0002251,2.91e-10,20;CL:1000449,4.84e-10,15;CL:0002077,7.32e-09,34;CL:0002202,4.98e-08,9;CL:0002632,4.98e-08,9;CL:0002159,5.78e-08,14;CL:0000075,3.85e-07,27;CL:0000039,5.50e-07,7;CL:0000586,5.50e-07,7;CL:0002681,5.57e-07,12;CL:0002584,5.57e-07,12|ontology_enrichment_development_v019=CL:0000223;6.04e-09;58|ontology_enrichment_disease=DOID:305!1.30e-13!106;DOID:0050687!7.80e-09!143;DOID:1749!7.09e-08!14;DOID:299!2.38e-07!25|ontology_enrichment_disease_v019=DOID:1749;1.56e-09;14|ontology_enrichment_disease_v019_2=DOID:305,6.45e-13,106;DOID:1749,1.32e-09,14;DOID:0050687,1.96e-08,143|ontology_enrichment_uberon=UBERON:0004119!5.83e-16!169;UBERON:0000925!5.83e-16!169;UBERON:0006595!5.83e-16!169;UBERON:0000464!1.80e-11!104;UBERON:0000466!5.48e-11!126;UBERON:0001007!7.56e-11!155;UBERON:0001555!7.56e-11!155;UBERON:0007026!7.56e-11!155;UBERON:0001008!1.28e-10!45;UBERON:0006554!2.39e-10!44;UBERON:0000062!4.98e-10!511;UBERON:0004921!6.03e-09!129;UBERON:0004185!6.03e-09!129;UBERON:0000077!1.37e-08!130;UBERON:0000058!1.57e-08!26;UBERON:0000080!3.66e-08!18;UBERON:0002120!3.66e-08!18;UBERON:0004875!3.66e-08!18;UBERON:0005721!3.66e-08!18;UBERON:0005754!3.66e-08!18;UBERON:0007297!3.66e-08!18;UBERON:0006555!4.44e-08!17;UBERON:0005103!4.44e-08!17;UBERON:0000083!4.44e-08!17;UBERON:0009201!4.44e-08!17;UBERON:0004819!4.44e-08!17;UBERON:0006553!4.44e-08!17;UBERON:0003074!4.44e-08!17;UBERON:0003060!4.44e-08!17;UBERON:0005911!5.70e-08!82;UBERON:0004211!1.08e-07!16;UBERON:0001285!1.08e-07!16;UBERON:0007684!1.08e-07!16;UBERON:0003220!1.08e-07!16;UBERON:0004208!1.08e-07!16;UBERON:0004876!1.27e-07!20;UBERON:0001004!1.57e-07!72;UBERON:0009773!1.67e-07!12;UBERON:0001231!1.67e-07!12;UBERON:0004810!1.67e-07!12;UBERON:0005177!1.90e-07!107;UBERON:0003887!3.39e-07!21;UBERON:0002113!4.39e-07!27;UBERON:0003918!4.39e-07!27;UBERON:0005095!4.39e-07!27;UBERON:0007687!4.39e-07!27;UBERON:0001444!4.57e-07!48;UBERON:0002553!5.45e-07!70;UBERON:0003064!5.58e-07!37;UBERON:0000489!7.99e-07!32|ontology_enrichment_uberon_v019=UBERON:0006554;1.39e-13;30!UBERON:0001008;1.39e-13;30!UBERON:0004211;5.06e-12;10!UBERON:0009773;5.06e-12;10!UBERON:0001231;5.06e-12;10!UBERON:0004810;5.06e-12;10!UBERON:0006555;5.16e-10;15!UBERON:0004819;5.16e-10;15!UBERON:0001285;5.16e-10;15!UBERON:0007684;5.16e-10;15!UBERON:0002113;1.20e-08;24!UBERON:0011143;1.20e-08;24!UBERON:0000489;3.42e-08;29!UBERON:0004921;1.38e-07;33!UBERON:0000365;3.96e-07;5!UBERON:0010371;4.93e-07;31!UBERON:0001225;5.88e-07;12!UBERON:0008987;5.88e-07;12!UBERON:0005911;8.60e-07;36|ontology_enrichment_uberon_v019_2=UBERON:0001008,5.75e-18,48;UBERON:0006554,1.48e-17,47;UBERON:0004119,1.00e-16,160;UBERON:0000925,1.00e-16,160;UBERON:0006595,1.00e-16,160;UBERON:0004810,4.67e-12,10;UBERON:0001007,5.82e-11,145;UBERON:0001555,5.82e-11,145;UBERON:0007026,5.82e-11,145;UBERON:0006555,1.32e-10,16;UBERON:0004819,1.32e-10,16;UBERON:0004211,4.84e-10,15;UBERON:0009773,4.84e-10,15;UBERON:0001231,4.84e-10,15;UBERON:0001285,4.84e-10,15;UBERON:0007684,4.84e-10,15;UBERON:0004208,4.84e-10,15;UBERON:0004921,7.96e-10,118;UBERON:0005177,3.01e-09,101;UBERON:0005631,5.10e-09,14;UBERON:0000158,5.10e-09,14;UBERON:0002113,1.11e-08,26;UBERON:0003918,1.11e-08,26;UBERON:0011143,1.11e-08,26;UBERON:0005095,1.11e-08,26;UBERON:0007687,1.11e-08,26;UBERON:0000161,2.36e-08,36;UBERON:0000489,2.70e-08,31;UBERON:0000033,1.13e-07,56;UBERON:0001004,2.07e-07,74;UBERON:0009569,2.56e-07,112;UBERON:0005911,3.23e-07,82;UBERON:0000365,4.10e-07,5;UBERON:0005153,4.20e-07,37;UBERON:0001225,5.57e-07,12;UBERON:0008987,5.57e-07,12;UBERON:0000153,6.90e-07,62;UBERON:0007811,6.90e-07,62;UBERON:0000076,7.96e-07,8;UBERON:0003124,8.29e-07,7|phase1_expression=0,0,0,0,0,0.872338524100369,0,0,0,15.9727058725981,58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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6692 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11246 | |||
|TSSclassifier=S | |||
|UniProt=F5H877,O43278 | |||
|association_with_transcript=17bp_to_ENST00000536281,NM_003710,NM_181642,uc001zna.2,uc001znb.2_5end | |||
|coexpression_cluster_id=C3485 | |||
|description=CAGE_peak_4_at_SPINT1_5end | |||
|id=chr15:41136263..41136291,+ | |||
|ontology_enrichment_celltype=CL:0000066!6.12e-35!254;CL:0002076!7.74e-18!43;CL:0000223!1.29e-12!59;CL:1000497!2.64e-08!18;CL:0002518!2.64e-08!18;CL:0002368!3.01e-08!13;CL:0002251!7.80e-08!21;CL:1000449!1.08e-07!16;CL:0002077!1.43e-07!33;CL:1000507!1.67e-07!12;CL:1000494!1.67e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0002076;5.43e-18;42!CL:1000507;5.06e-12;10!CL:1000494;5.06e-12;10!CL:0002368;8.01e-12;13!CL:1000497;7.62e-11;17!CL:0002518;7.62e-11;17!CL:0002251;3.09e-10;20!CL:1000449;5.16e-10;15!CL:0002077;3.95e-08;34!CL:0002202;4.54e-08;9!CL:0002632;4.54e-08;9!CL:0002159;5.24e-08;14!CL:0000075;3.50e-07;27!CL:0002681;5.88e-07;12!CL:0002584;5.88e-07;12!CL:0000039;5.94e-07;7!CL:0000586;5.94e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.07e-40,253;CL:0002076,3.89e-23,42;CL:0000223,1.47e-16,58;CL:1000507,4.67e-12,10;CL:1000494,4.67e-12,10;CL:0002368,8.88e-12,13;CL:1000497,6.16e-11,17;CL:0002518,6.16e-11,17;CL:0002251,2.91e-10,20;CL:1000449,4.84e-10,15;CL:0002077,7.32e-09,34;CL:0002202,4.98e-08,9;CL:0002632,4.98e-08,9;CL:0002159,5.78e-08,14;CL:0000075,3.85e-07,27;CL:0000039,5.50e-07,7;CL:0000586,5.50e-07,7;CL:0002681,5.57e-07,12;CL:0002584,5.57e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000223;6.04e-09;58 | |||
|ontology_enrichment_disease=DOID:305!1.30e-13!106;DOID:0050687!7.80e-09!143;DOID:1749!7.09e-08!14;DOID:299!2.38e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.56e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,6.45e-13,106;DOID:1749,1.32e-09,14;DOID:0050687,1.96e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!5.83e-16!169;UBERON:0000925!5.83e-16!169;UBERON:0006595!5.83e-16!169;UBERON:0000464!1.80e-11!104;UBERON:0000466!5.48e-11!126;UBERON:0001007!7.56e-11!155;UBERON:0001555!7.56e-11!155;UBERON:0007026!7.56e-11!155;UBERON:0001008!1.28e-10!45;UBERON:0006554!2.39e-10!44;UBERON:0000062!4.98e-10!511;UBERON:0004921!6.03e-09!129;UBERON:0004185!6.03e-09!129;UBERON:0000077!1.37e-08!130;UBERON:0000058!1.57e-08!26;UBERON:0000080!3.66e-08!18;UBERON:0002120!3.66e-08!18;UBERON:0004875!3.66e-08!18;UBERON:0005721!3.66e-08!18;UBERON:0005754!3.66e-08!18;UBERON:0007297!3.66e-08!18;UBERON:0006555!4.44e-08!17;UBERON:0005103!4.44e-08!17;UBERON:0000083!4.44e-08!17;UBERON:0009201!4.44e-08!17;UBERON:0004819!4.44e-08!17;UBERON:0006553!4.44e-08!17;UBERON:0003074!4.44e-08!17;UBERON:0003060!4.44e-08!17;UBERON:0005911!5.70e-08!82;UBERON:0004211!1.08e-07!16;UBERON:0001285!1.08e-07!16;UBERON:0007684!1.08e-07!16;UBERON:0003220!1.08e-07!16;UBERON:0004208!1.08e-07!16;UBERON:0004876!1.27e-07!20;UBERON:0001004!1.57e-07!72;UBERON:0009773!1.67e-07!12;UBERON:0001231!1.67e-07!12;UBERON:0004810!1.67e-07!12;UBERON:0005177!1.90e-07!107;UBERON:0003887!3.39e-07!21;UBERON:0002113!4.39e-07!27;UBERON:0003918!4.39e-07!27;UBERON:0005095!4.39e-07!27;UBERON:0007687!4.39e-07!27;UBERON:0001444!4.57e-07!48;UBERON:0002553!5.45e-07!70;UBERON:0003064!5.58e-07!37;UBERON:0000489!7.99e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.39e-13;30!UBERON:0001008;1.39e-13;30!UBERON:0004211;5.06e-12;10!UBERON:0009773;5.06e-12;10!UBERON:0001231;5.06e-12;10!UBERON:0004810;5.06e-12;10!UBERON:0006555;5.16e-10;15!UBERON:0004819;5.16e-10;15!UBERON:0001285;5.16e-10;15!UBERON:0007684;5.16e-10;15!UBERON:0002113;1.20e-08;24!UBERON:0011143;1.20e-08;24!UBERON:0000489;3.42e-08;29!UBERON:0004921;1.38e-07;33!UBERON:0000365;3.96e-07;5!UBERON:0010371;4.93e-07;31!UBERON:0001225;5.88e-07;12!UBERON:0008987;5.88e-07;12!UBERON:0005911;8.60e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001008,5.75e-18,48;UBERON:0006554,1.48e-17,47;UBERON:0004119,1.00e-16,160;UBERON:0000925,1.00e-16,160;UBERON:0006595,1.00e-16,160;UBERON:0004810,4.67e-12,10;UBERON:0001007,5.82e-11,145;UBERON:0001555,5.82e-11,145;UBERON:0007026,5.82e-11,145;UBERON:0006555,1.32e-10,16;UBERON:0004819,1.32e-10,16;UBERON:0004211,4.84e-10,15;UBERON:0009773,4.84e-10,15;UBERON:0001231,4.84e-10,15;UBERON:0001285,4.84e-10,15;UBERON:0007684,4.84e-10,15;UBERON:0004208,4.84e-10,15;UBERON:0004921,7.96e-10,118;UBERON:0005177,3.01e-09,101;UBERON:0005631,5.10e-09,14;UBERON:0000158,5.10e-09,14;UBERON:0002113,1.11e-08,26;UBERON:0003918,1.11e-08,26;UBERON:0011143,1.11e-08,26;UBERON:0005095,1.11e-08,26;UBERON:0007687,1.11e-08,26;UBERON:0000161,2.36e-08,36;UBERON:0000489,2.70e-08,31;UBERON:0000033,1.13e-07,56;UBERON:0001004,2.07e-07,74;UBERON:0009569,2.56e-07,112;UBERON:0005911,3.23e-07,82;UBERON:0000365,4.10e-07,5;UBERON:0005153,4.20e-07,37;UBERON:0001225,5.57e-07,12;UBERON:0008987,5.57e-07,12;UBERON:0000153,6.90e-07,62;UBERON:0007811,6.90e-07,62;UBERON:0000076,7.96e-07,8;UBERON:0003124,8.29e-07,7 | |||
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| |||
|short_description=p4@SPINT1 | |||
}} |
Revision as of 06:56, 11 September 2013
Short description: | p4@SPINT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_SPINT1_5end |
Coexpression cluster: | C3485_Alveolar_choriocarcinoma_Iris_placenta_Urothelial_endometrioid_clear |
Association with transcript: | 17bp_to_ENST00000536281, NM_003710, NM_181642, uc001zna.2, uc001znb.2_5end |
EntrezGene: | SPINT1 |
HGNC: | 11246 |
UniProt: | F5H877O43278 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.07e-40 | 253 |
endo-epithelial cell | 3.89e-23 | 42 |
endodermal cell | 1.47e-16 | 58 |
kidney tubule cell | 4.67e-12 | 10 |
nephron tubule epithelial cell | 4.67e-12 | 10 |
respiratory epithelial cell | 8.88e-12 | 13 |
kidney cell | 6.16e-11 | 17 |
kidney epithelial cell | 6.16e-11 | 17 |
epithelial cell of alimentary canal | 2.91e-10 | 20 |
epithelial cell of nephron | 4.84e-10 | 15 |
ecto-epithelial cell | 7.32e-09 | 34 |
epithelial cell of tracheobronchial tree | 4.98e-08 | 9 |
epithelial cell of lower respiratory tract | 4.98e-08 | 9 |
general ecto-epithelial cell | 5.78e-08 | 14 |
columnar/cuboidal epithelial cell | 3.85e-07 | 27 |
germ line cell | 5.50e-07 | 7 |
germ cell | 5.50e-07 | 7 |
kidney cortical cell | 5.57e-07 | 12 |
renal cortical epithelial cell | 5.57e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 6.45e-13 | 106 |
squamous cell carcinoma | 1.32e-09 | 14 |
cell type cancer | 1.96e-08 | 143 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.