FFCP PHASE1:Hg19::chr19:2477661..2477696,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4616|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding|HGNC=4096|TSSclassifier=S|UniProt=|association_with_transcript=-33bp_to_AL050044_5end|coexpression_cluster_id=C168|description=CAGE_peak_5_at_GADD45B_5end|id=chr19:2477661..2477696,+|ontology_enrichment_celltype=CL:0002057!3.83e-16!42;CL:0000860!1.44e-14!45;CL:0000766!1.19e-13!76;CL:0000738!1.65e-12!140;CL:0000557!1.22e-11!71;CL:0000839!2.32e-10!70;CL:0002031!2.82e-10!124;CL:0002009!8.30e-10!65;CL:0002087!5.08e-09!119;CL:0002194!5.73e-09!63;CL:0000576!5.73e-09!63;CL:0000040!5.73e-09!63;CL:0000559!5.73e-09!63;CL:0000037!2.88e-08!172;CL:0000566!2.88e-08!172;CL:0002032!3.11e-08!165;CL:0000837!3.11e-08!165;CL:0000988!3.38e-08!182;CL:0000134!4.84e-08!358;CL:0000763!4.92e-08!112;CL:0000049!4.92e-08!112;CL:0002320!1.66e-07!365|ontology_enrichment_celltype_v019=CL:0000860;4.96e-23;33!CL:0002057;4.96e-23;33!CL:0000473;1.48e-17;39!CL:0000234;1.48e-17;39!CL:0000766;4.20e-14;69!CL:0000576;1.68e-13;48!CL:0000136;4.30e-10;13|ontology_enrichment_celltype_v019_2=CL:0000766,2.81e-26,72;CL:0000860,1.93e-25,42;CL:0002057,1.93e-25,42;CL:0000473,1.15e-23,48;CL:0000234,1.15e-23,48;CL:0000557,1.86e-22,67;CL:0000839,6.61e-21,66;CL:0002009,7.92e-19,61;CL:0002194,9.78e-18,59;CL:0000576,9.78e-18,59;CL:0000040,9.78e-18,59;CL:0000559,9.78e-18,59;CL:0000738,1.20e-16,136;CL:0000763,2.43e-16,108;CL:0000049,2.43e-16,108;CL:0002031,1.27e-13,120;CL:0000037,8.22e-12,168;CL:0002032,8.47e-12,161;CL:0000837,8.47e-12,161;CL:0002087,8.32e-11,115;CL:0000988,8.85e-11,177;CL:0000136,1.20e-08,15;CL:0000134,1.61e-07,354;CL:0002320,3.66e-07,361|ontology_enrichment_development_v019=CL:0002057;3.21e-17;42!UBERON:0007297;5.50e-07;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!1.64e-10!102;UBERON:0003061!1.64e-10!102;UBERON:0001474!2.47e-10!86;UBERON:0002371!2.67e-10!80;UBERON:0002193!5.94e-09!112;UBERON:0002405!2.02e-08!115;UBERON:0004765!2.13e-07!101;UBERON:0001434!2.13e-07!101;UBERON:0002384!2.35e-07!375|ontology_enrichment_uberon_v019=UBERON:0002133;8.05e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.27e-20,76;UBERON:0001474,1.33e-18,82;UBERON:0004765,2.49e-16,90;UBERON:0002390,1.13e-15,98;UBERON:0003061,1.13e-15,98;UBERON:0002405,1.40e-15,93;UBERON:0001434,5.21e-14,100;UBERON:0002193,1.45e-13,108;UBERON:0003081,8.66e-08,203;UBERON:0002384,3.44e-07,371;UBERON:0002133,4.18e-07,2|phase1_expression=1.2717486548939,0.428201047781966,0.422863212287913,0,1.34088328328186,0,2.53299878168311,0.631719873426831,0,0.245733936501509,0.697801167972428,0.436882744260345,0,0.123766352960047,0,0,0,0,0,0.123121058076788,0.612002073732759,0,0,0,0.251085279189606,0.305653622991805,0,0.0787107813136792,1.18009283054671,0.383829398097213,0.154816123316076,0,0,0,0.154934401160603,0.284338464974843,0,1.10799081706375,1.80490002723128,1.73608696572681,0,0,0.257575567634187,0.872389432677388,0,0.485168122375632,0.929716147622738,0,1.85823822537062,1.43846196161075,1.5369642391746,3.31075121844019,5.5159308917859,6.45484683583826,8.12558919566051,0.188242339542605,0,1.12361742222542,7.34601341690166,3.20929027076094,5.75403413219137,0.659702600373432,1.59570926097305,1.70489900213078,0.870627715885752,1.13477044938228,0.622822248995575,2.26123798731069,2.60741459210101,3.04064382587163,0.605399502633369,0.368277635987565,1.89877432464531,0.845021145247767,0.425208599930087,0,0.22465726229299,0.750884464207532,0,0,0.39783335439818,0,0,0,0,0.426730222566507,0,0,0,0,0.569212969109448,1.17447437874188,0.382273228125229,0,0.560508562981536,0,0,0.786021525498329,1.02800749499755,0.167186495390678,0,0,0,0.111410456885174,0.294605907474837,0.221533894583621,0,0,0,0.164437904603676,0,0,0.296573126324121,0,0,0,0.383220493601921,0,0,0,0,0,0.150575119077773,0,0,0.236777252044017,0,0,0.802320587350522,1.01377082717959,0,0,0,0,0,0.144846518960824,0,0,0.0945348171640679,0,0,0.523916301990851,0,0,0,0.174129737299267,0,0,0,0,0,0,0.347140501607594,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0.81014194788176,0.0892997282840798,0,0,0,0,0,0,3.87780264148325,0,0,0.12663051166458,0,0.860509862246441,0,0,0,0.98667019366864,0,0.134710672069688,0,0.302714855289863,0,0,0,0,0.149448680551801,0.23486899728753,0.161872944368132,0.561803226808994,0,0.122834317311768,0.103325781175765,0,0.247266929278557,0,0,0,0,0,0,0.30648779579902,0,0.340296549480063,0.179389635688862,0,0,0.300091096084402,0.206105058476878,0.257640540045629,0,0.168776332241266,0,0.252433774244115,0.184099797284599,0,0,0.302256294682921,0,0,0,0,0.121973706129595,0,0.116193942869518,0,0.252320850875628,0,1.56449532329816,0.643240938192885,0,0.464367928031979,0,0.236613600079688,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0.982827216677626,3.54473944008842,0,0,0.171567810298526,0,0,0.100528972411631,0,0,0,0,0,0,0.433099343283221,0,0.190254152234598,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0.985326475791887,0.176096868026452,11.6103744702832,5.6206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725161227,1.0820016907288,0,1.74173398317569,0.342233301085281,0.0673520530145875,0.286888821570705,0,0.0814032686109745,0.320182037633146,0,0,0,0.244482888365733,0,0,0.805095174364105,0.641136984606466|short_description=p5@GADD45B}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=4616 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=4096 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-33bp_to_AL050044_5end | |||
|coexpression_cluster_id=C168 | |||
|description=CAGE_peak_5_at_GADD45B_5end | |||
|id=chr19:2477661..2477696,+ | |||
|ontology_enrichment_celltype=CL:0002057!3.83e-16!42;CL:0000860!1.44e-14!45;CL:0000766!1.19e-13!76;CL:0000738!1.65e-12!140;CL:0000557!1.22e-11!71;CL:0000839!2.32e-10!70;CL:0002031!2.82e-10!124;CL:0002009!8.30e-10!65;CL:0002087!5.08e-09!119;CL:0002194!5.73e-09!63;CL:0000576!5.73e-09!63;CL:0000040!5.73e-09!63;CL:0000559!5.73e-09!63;CL:0000037!2.88e-08!172;CL:0000566!2.88e-08!172;CL:0002032!3.11e-08!165;CL:0000837!3.11e-08!165;CL:0000988!3.38e-08!182;CL:0000134!4.84e-08!358;CL:0000763!4.92e-08!112;CL:0000049!4.92e-08!112;CL:0002320!1.66e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.96e-23;33!CL:0002057;4.96e-23;33!CL:0000473;1.48e-17;39!CL:0000234;1.48e-17;39!CL:0000766;4.20e-14;69!CL:0000576;1.68e-13;48!CL:0000136;4.30e-10;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.81e-26,72;CL:0000860,1.93e-25,42;CL:0002057,1.93e-25,42;CL:0000473,1.15e-23,48;CL:0000234,1.15e-23,48;CL:0000557,1.86e-22,67;CL:0000839,6.61e-21,66;CL:0002009,7.92e-19,61;CL:0002194,9.78e-18,59;CL:0000576,9.78e-18,59;CL:0000040,9.78e-18,59;CL:0000559,9.78e-18,59;CL:0000738,1.20e-16,136;CL:0000763,2.43e-16,108;CL:0000049,2.43e-16,108;CL:0002031,1.27e-13,120;CL:0000037,8.22e-12,168;CL:0002032,8.47e-12,161;CL:0000837,8.47e-12,161;CL:0002087,8.32e-11,115;CL:0000988,8.85e-11,177;CL:0000136,1.20e-08,15;CL:0000134,1.61e-07,354;CL:0002320,3.66e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;3.21e-17;42!UBERON:0007297;5.50e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.64e-10!102;UBERON:0003061!1.64e-10!102;UBERON:0001474!2.47e-10!86;UBERON:0002371!2.67e-10!80;UBERON:0002193!5.94e-09!112;UBERON:0002405!2.02e-08!115;UBERON:0004765!2.13e-07!101;UBERON:0001434!2.13e-07!101;UBERON:0002384!2.35e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0002133;8.05e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.27e-20,76;UBERON:0001474,1.33e-18,82;UBERON:0004765,2.49e-16,90;UBERON:0002390,1.13e-15,98;UBERON:0003061,1.13e-15,98;UBERON:0002405,1.40e-15,93;UBERON:0001434,5.21e-14,100;UBERON:0002193,1.45e-13,108;UBERON:0003081,8.66e-08,203;UBERON:0002384,3.44e-07,371;UBERON:0002133,4.18e-07,2 | |||
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| |||
|short_description=p5@GADD45B | |||
}} |
Revision as of 19:47, 11 September 2013
Short description: | p5@GADD45B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_GADD45B_5end |
Coexpression cluster: | C168_Mast_CD14_immature_Basophils_Eosinophils_CD34_Peripheral |
Association with transcript: | -33bp_to_AL050044_5end |
EntrezGene: | GADD45B |
HGNC: | 4096 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.81e-26 | 72 |
classical monocyte | 1.93e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.93e-25 | 42 |
defensive cell | 1.15e-23 | 48 |
phagocyte | 1.15e-23 | 48 |
granulocyte monocyte progenitor cell | 1.86e-22 | 67 |
myeloid lineage restricted progenitor cell | 6.61e-21 | 66 |
macrophage dendritic cell progenitor | 7.92e-19 | 61 |
monopoietic cell | 9.78e-18 | 59 |
monocyte | 9.78e-18 | 59 |
monoblast | 9.78e-18 | 59 |
promonocyte | 9.78e-18 | 59 |
leukocyte | 1.20e-16 | 136 |
myeloid cell | 2.43e-16 | 108 |
common myeloid progenitor | 2.43e-16 | 108 |
hematopoietic lineage restricted progenitor cell | 1.27e-13 | 120 |
hematopoietic stem cell | 8.22e-12 | 168 |
hematopoietic oligopotent progenitor cell | 8.47e-12 | 161 |
hematopoietic multipotent progenitor cell | 8.47e-12 | 161 |
nongranular leukocyte | 8.32e-11 | 115 |
hematopoietic cell | 8.85e-11 | 177 |
fat cell | 1.20e-08 | 15 |
mesenchymal cell | 1.61e-07 | 354 |
connective tissue cell | 3.66e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.27e-20 | 76 |
bone element | 1.33e-18 | 82 |
skeletal element | 2.49e-16 | 90 |
hematopoietic system | 1.13e-15 | 98 |
blood island | 1.13e-15 | 98 |
immune system | 1.40e-15 | 93 |
skeletal system | 5.21e-14 | 100 |
hemolymphoid system | 1.45e-13 | 108 |
lateral plate mesoderm | 8.66e-08 | 203 |
connective tissue | 3.44e-07 | 371 |
atrioventricular valve | 4.18e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.