FFCP PHASE1:Hg19::chr2:228356266..228356291,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3267|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=5175|TSSclassifier=N|UniProt=B4DHC5|association_with_transcript=-4bp_to_AK295030_5end|description=CAGE_peak_2_at_AGFG1_5end|id=chr2:228356266..228356291,+|ontology_enrichment_celltype=CL:0000860!4.84e-18!45;CL:0002057!1.05e-17!42;CL:0002194!1.65e-11!63;CL:0000576!1.65e-11!63;CL:0000040!1.65e-11!63;CL:0000559!1.65e-11!63;CL:0002009!3.48e-11!65;CL:0000766!1.13e-10!76;CL:0002087!1.10e-09!119;CL:0000738!5.82e-09!140;CL:0000839!6.41e-09!70;CL:0000557!6.94e-09!71;CL:0002031!1.06e-07!124|ontology_enrichment_celltype_v019=CL:0000860;7.04e-24;33!CL:0002057;7.04e-24;33!CL:0000473;1.78e-18;39!CL:0000234;1.78e-18;39!CL:0000576;2.30e-11;48!CL:0000766;2.32e-08;69|ontology_enrichment_celltype_v019_2=CL:0000860,6.65e-24,42;CL:0002057,6.65e-24,42;CL:0000473,4.94e-23,48;CL:0000234,4.94e-23,48;CL:0002194,4.72e-16,59;CL:0000576,4.72e-16,59;CL:0000040,4.72e-16,59;CL:0000559,4.72e-16,59;CL:0002009,4.86e-16,61;CL:0000766,9.20e-15,72;CL:0000557,3.30e-13,67;CL:0000839,9.76e-13,66;CL:0002087,1.51e-10,115;CL:0000738,2.38e-10,136;CL:0002031,6.09e-09,120;CL:0000763,4.51e-07,108;CL:0000049,4.51e-07,108|ontology_enrichment_development_v019=CL:0002057;1.80e-17;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!4.01e-07!80;UBERON:0004765!7.74e-07!101;UBERON:0001434!7.74e-07!101|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.90e-11,76;UBERON:0004765,6.43e-10,90;UBERON:0001474,8.79e-10,82;UBERON:0002390,1.43e-09,98;UBERON:0003061,1.43e-09,98;UBERON:0001434,4.57e-09,100;UBERON:0002204,1.22e-08,167;UBERON:0002193,2.73e-07,108;UBERON:0002405,4.31e-07,93|phase1_expression=0.908391896352783,2.78330681058278,0.845726424575827,2.00146596706261,1.34088328328186,1.74467704820074,0,0.631719873426831,0.783556884599516,0.491467873003018,0,0.218441372130172,0.791300934685361,0.74259811776028,2.31978163009541,2.6893005858071,0.602694528023977,2.92124036154949,1.46379839637152,0.123121058076788,0,0.313454721478088,0,2.05311637609326,0.502170558379211,1.68109492645493,1.06730766284929,1.25937250101887,1.18009283054671,0.767658796194425,0.619264493264304,0,0.6024118375565,0.739508020333575,0.774672005803016,0.710846162437108,0.293600439334847,0,3.40925560699241,0,0.447830948479849,0.647787332037959,0.257575567634187,6.25212426752128,3.02300754951048,1.69808842831471,4.41615170120801,2.46700732813095,3.09706370895104,6.61692502340946,5.37937483711111,5.43909128743746,3.44745680736619,3.87290810150296,6.77132432971709,7.52969358170419,3.27487380069415,3.59557575112135,5.81559395504715,4.17207735198922,3.19668562899521,4.94776950280074,5.98390972864896,7.2458207590558,7.54544020434318,2.8369261234557,4.35975574296902,9.54744927975624,5.21482918420201,4.12658804939722,4.84319602106695,2.94622108790052,4.1140110367315,0.845021145247767,1.27562579979026,0.838634582033504,0.786300418025466,1.65194582125657,1.6072558669708,1.14005097496499,1.19350006319454,1.27864907635244,1.75996244461323,1.09227722252426,0.889509253863555,0.426730222566507,0,0.574752439954483,0.661044872784862,0,2.27685187643779,0,3.44045905312706,0,0,0.263384084775077,0.393419540227666,1.57204305099666,1.02800749499755,0.668745981562712,0.651844533267181,1.4203434172042,0,0.445641827540694,0.589211814949674,0.886135578334485,0.812411591295047,1.0247305578054,0.390178042679635,0,0.276350017785848,0.579606171470105,0.444859689486181,0.267540828089713,1.04535523804977,0.793165398882963,1.53288197440768,1.03088233644789,1.01207876807801,0.318565414324097,0,1.90090408889675,0.752875595388864,0.383959833463255,0,0.236777252044017,0.821127996921047,0.403213486449465,1.06976078313403,1.44824403882799,2.43806866313962,4.69490601792545,0.383587685530591,2.1686349143074,0,2.462390822334,0,0,1.03988298880475,2.21729397462564,1.05401742831751,0.916853528483988,0,0,0.649094787309367,0,1.59549552622638,0,0,0,0.79504962946682,0.860234595106124,0.347140501607594,0,0,2.75118041940067,0.835979866147242,0.258416759169329,0.35576626268671,0,0,2.28081631715554,0.732186172644509,0.367663080345869,0.81014194788176,0.625098097988558,0,0.675668882899933,0,0.949265659568129,0.732806975721629,0,3.87780264148325,0,0.496971951695318,0.759783069987479,0.397227542439656,0.860509862246441,0.709336764396714,1.68203280042692,1.06748995729705,0.49333509683432,0,1.0776853765575,0.653847612453835,0.151357427644931,0.576175924479999,0,0,0.570471821544449,0.747243402759005,0.939475989150119,0.485618833104395,0.702254033511242,0.61246251376468,1.47401180774122,0.516628905878827,1.18800285728205,1.48360157567134,0,0.718618141816238,0.505008341862199,0.500474079487857,0.277064115484183,0.438977620880838,2.14541457059314,1.05166641234618,0.907457465280168,1.25572744982203,0.213557388818567,0.847727604638247,0.600182192168805,0.721367704669072,0.257640540045629,0.558350568994769,0.33755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|short_description=p2@AGFG1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=3267 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=5175 | |||
|TSSclassifier=N | |||
|UniProt=B4DHC5 | |||
|association_with_transcript=-4bp_to_AK295030_5end | |||
|description=CAGE_peak_2_at_AGFG1_5end | |||
|id=chr2:228356266..228356291,+ | |||
|ontology_enrichment_celltype=CL:0000860!4.84e-18!45;CL:0002057!1.05e-17!42;CL:0002194!1.65e-11!63;CL:0000576!1.65e-11!63;CL:0000040!1.65e-11!63;CL:0000559!1.65e-11!63;CL:0002009!3.48e-11!65;CL:0000766!1.13e-10!76;CL:0002087!1.10e-09!119;CL:0000738!5.82e-09!140;CL:0000839!6.41e-09!70;CL:0000557!6.94e-09!71;CL:0002031!1.06e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.04e-24;33!CL:0002057;7.04e-24;33!CL:0000473;1.78e-18;39!CL:0000234;1.78e-18;39!CL:0000576;2.30e-11;48!CL:0000766;2.32e-08;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,6.65e-24,42;CL:0002057,6.65e-24,42;CL:0000473,4.94e-23,48;CL:0000234,4.94e-23,48;CL:0002194,4.72e-16,59;CL:0000576,4.72e-16,59;CL:0000040,4.72e-16,59;CL:0000559,4.72e-16,59;CL:0002009,4.86e-16,61;CL:0000766,9.20e-15,72;CL:0000557,3.30e-13,67;CL:0000839,9.76e-13,66;CL:0002087,1.51e-10,115;CL:0000738,2.38e-10,136;CL:0002031,6.09e-09,120;CL:0000763,4.51e-07,108;CL:0000049,4.51e-07,108 | |||
|ontology_enrichment_development_v019=CL:0002057;1.80e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!4.01e-07!80;UBERON:0004765!7.74e-07!101;UBERON:0001434!7.74e-07!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.90e-11,76;UBERON:0004765,6.43e-10,90;UBERON:0001474,8.79e-10,82;UBERON:0002390,1.43e-09,98;UBERON:0003061,1.43e-09,98;UBERON:0001434,4.57e-09,100;UBERON:0002204,1.22e-08,167;UBERON:0002193,2.73e-07,108;UBERON:0002405,4.31e-07,93 | |||
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| |||
|short_description=p2@AGFG1 | |||
}} |
Revision as of 17:13, 12 September 2013
Short description: | p2@AGFG1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_AGFG1_5end |
Coexpression cluster: | NA |
Association with transcript: | -4bp_to_AK295030_5end |
EntrezGene: | AGFG1 |
HGNC: | 5175 |
UniProt: | B4DHC5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 6.65e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.65e-24 | 42 |
defensive cell | 4.94e-23 | 48 |
phagocyte | 4.94e-23 | 48 |
monopoietic cell | 4.72e-16 | 59 |
monocyte | 4.72e-16 | 59 |
monoblast | 4.72e-16 | 59 |
promonocyte | 4.72e-16 | 59 |
macrophage dendritic cell progenitor | 4.86e-16 | 61 |
myeloid leukocyte | 9.20e-15 | 72 |
granulocyte monocyte progenitor cell | 3.30e-13 | 67 |
myeloid lineage restricted progenitor cell | 9.76e-13 | 66 |
nongranular leukocyte | 1.51e-10 | 115 |
leukocyte | 2.38e-10 | 136 |
hematopoietic lineage restricted progenitor cell | 6.09e-09 | 120 |
myeloid cell | 4.51e-07 | 108 |
common myeloid progenitor | 4.51e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.90e-11 | 76 |
skeletal element | 6.43e-10 | 90 |
bone element | 8.79e-10 | 82 |
hematopoietic system | 1.43e-09 | 98 |
blood island | 1.43e-09 | 98 |
skeletal system | 4.57e-09 | 100 |
musculoskeletal system | 1.22e-08 | 167 |
hemolymphoid system | 2.73e-07 | 108 |
immune system | 4.31e-07 | 93 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.