FFCP PHASE1:Hg19::chr3:38017384..38017388,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr3:38017384..38017388,+|id=chr3:38017384..38017388,+|ontology_enrichment_celltype=CL:0000548!1.34e-09!679;CL:0000004!1.34e-09!679;CL:0000255!1.34e-09!679;CL:0000012!2.42e-09!682;CL:0000066!7.45e-09!254;CL:0000220!1.42e-07!246;CL:0002321!2.30e-07!248;CL:0002371!7.86e-07!591|ontology_enrichment_celltype_v019=CL:0002336;2.62e-23;1!CL:0002261;2.62e-23;1!CL:0002252;2.62e-23;1!CL:0002170;2.62e-23;1!CL:0002195;2.31e-12;2!CL:0002571;2.31e-12;2!CL:0002602;2.31e-12;2!CL:0002504;1.12e-08;3!CL:1000279;1.12e-08;3!CL:0000708;1.12e-08;3!CL:0000746;1.12e-08;3!CL:0002564;1.12e-08;3!CL:1000280;1.12e-08;3!CL:0002618;1.12e-08;3!CL:0000737;8.14e-07;4|ontology_enrichment_celltype_v019_2=CL:0002252,2.10e-23,1;CL:0002336,2.62e-23,1;CL:0002261,2.62e-23,1;CL:0002170,2.62e-23,1;CL:0002602,2.90e-12,2;CL:0002195,3.62e-12,2;CL:0002571,3.62e-12,2;CL:0002504,8.31e-09,3;CL:1000279,8.31e-09,3;CL:1000280,8.31e-09,3;CL:0000746,8.96e-09,3;CL:0000513,8.96e-09,3;CL:0002564,9.66e-09,3;CL:0002618,1.21e-08,3;CL:0000708,1.40e-08,3;CL:0000737,6.87e-07,4|ontology_enrichment_development_v019=CL:0000513;1.12e-08;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000119!3.16e-10!312;UBERON:0005256!1.32e-09!143;UBERON:0000481!1.41e-09!347;UBERON:0000483!1.61e-09!309;UBERON:0003104!2.76e-08!238;UBERON:0009142!2.76e-08!238;UBERON:0000475!3.42e-08!365;UBERON:0001444!9.16e-08!48;UBERON:0000490!3.25e-07!138;UBERON:0007625!6.90e-07!11;UBERON:0003102!7.92e-07!95|ontology_enrichment_uberon_v019=UBERON:0011135;1.35e-18;5!UBERON:0002216;1.35e-18;5!UBERON:0011134;1.35e-18;5!UBERON:0002209;1.35e-18;5!UBERON:0002213;1.35e-18;5!UBERON:0007844;1.35e-18;5!UBERON:0011138;1.35e-18;5!UBERON:0001130;1.35e-18;5!UBERON:0001066;1.35e-18;5!UBERON:0001468;1.35e-18;5!UBERON:0006444;2.31e-12;2!UBERON:0001995;2.31e-12;2!UBERON:0004715;2.31e-12;2!UBERON:0004905;5.22e-12;8!UBERON:0000982;5.22e-12;8!UBERON:0004770;5.22e-12;8!UBERON:0001043;1.12e-08;3!UBERON:0002418;1.12e-08;3!UBERON:0004755;1.12e-08;3!UBERON:0003210;1.12e-08;3!UBERON:0002242;1.12e-08;3|ontology_enrichment_uberon_v019_2=UBERON:0011135,1.35e-18,5;UBERON:0002216,1.35e-18,5;UBERON:0011134,1.35e-18,5;UBERON:0002209,1.35e-18,5;UBERON:0002213,1.35e-18,5;UBERON:0005856,1.35e-18,5;UBERON:0005866,1.35e-18,5;UBERON:0005863,1.35e-18,5;UBERON:0007844,1.35e-18,5;UBERON:0011138,1.35e-18,5;UBERON:0001130,1.35e-18,5;UBERON:0001066,1.35e-18,5;UBERON:0001468,1.35e-18,5;UBERON:0006444,2.90e-12,2;UBERON:0001995,2.90e-12,2;UBERON:0004715,2.90e-12,2;UBERON:0004905,5.22e-12,8;UBERON:0000982,5.22e-12,8;UBERON:0004770,5.22e-12,8;UBERON:0002242,9.66e-09,3;UBERON:0003068,9.66e-09,3;UBERON:0002328,9.66e-09,3;UBERON:0004880,9.66e-09,3;UBERON:0001043,1.04e-08,3;UBERON:0009143,1.04e-08,3;UBERON:0002418,1.30e-08,3;UBERON:0004755,1.30e-08,3;UBERON:0003210,1.40e-08,3|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0.218441372130172,0,1.11389717664042,0,0,0,0,0,0,0.204000691244253,0,0.85870796139317,0,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,1.53435074212236,0,0,0.144846518960824,0,0,0.378139268656271,0.221729397462564,0.087834785693126,0,0,0.370784442784429,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0.24406205754817,0,0,1.16089646769304,0,0.225222960966644,0,0.949265659568129,0,0,0,1.3082821564276,0,0.506522046658319,0,0,0.354668382198357,0,0,0.24666754841716,0.622422070799533,0,0,0,0,0.937285727335186,0,0.570471821544449,0.149448680551801,0.117434498643765,0,0.140450806702248,0.204154171254893,0.245668634623536,0.413303124703062,0,0,0,0,0.505008341862199,0.250237039743928,0.831192346452549,0,0,0,0.453728732640084,0,0.427114777637135,0.423863802319124,0,0,0,0.18611685633159,0,0.0974370051611986,0,0.184099797284599,0.323292113637624,0,0,0.339121184620975,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0.928735856063958,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0.686271241194102,0,0,0.301586917234893,1.20364978706088,0,0,0,0.115930404975077,0.352226082707465,0.433099343283221,0,0,0,0,0,0,0,0,0.16798212819886,0,0.53735113621709,0.581267877027924,0,0,0,0,0,0,0.190493682876507,0.763976851116555,0,0,0,0,0,0,0.43596006883328,1.10007428731425,0.129271715757778,0,0.845302752556,0.26593811658487,0,0,0,0.266422179016099,0.714889968290738,0,0,0.325736184293735,1.06617584622764,0,0,0,0,0,0,0,0.239624855491583,0,0,0.144781306667579,0.205476322550383,0.537182889719687,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,1.47229790062968,0,0,0,0,0,0.117141414992713,0,0,0,0,0.184369168541703,0.260650843404249,0.39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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:38017384..38017388,+ | |||
|id=chr3:38017384..38017388,+ | |||
|ontology_enrichment_celltype=CL:0000548!1.34e-09!679;CL:0000004!1.34e-09!679;CL:0000255!1.34e-09!679;CL:0000012!2.42e-09!682;CL:0000066!7.45e-09!254;CL:0000220!1.42e-07!246;CL:0002321!2.30e-07!248;CL:0002371!7.86e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0002336;2.62e-23;1!CL:0002261;2.62e-23;1!CL:0002252;2.62e-23;1!CL:0002170;2.62e-23;1!CL:0002195;2.31e-12;2!CL:0002571;2.31e-12;2!CL:0002602;2.31e-12;2!CL:0002504;1.12e-08;3!CL:1000279;1.12e-08;3!CL:0000708;1.12e-08;3!CL:0000746;1.12e-08;3!CL:0002564;1.12e-08;3!CL:1000280;1.12e-08;3!CL:0002618;1.12e-08;3!CL:0000737;8.14e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002252,2.10e-23,1;CL:0002336,2.62e-23,1;CL:0002261,2.62e-23,1;CL:0002170,2.62e-23,1;CL:0002602,2.90e-12,2;CL:0002195,3.62e-12,2;CL:0002571,3.62e-12,2;CL:0002504,8.31e-09,3;CL:1000279,8.31e-09,3;CL:1000280,8.31e-09,3;CL:0000746,8.96e-09,3;CL:0000513,8.96e-09,3;CL:0002564,9.66e-09,3;CL:0002618,1.21e-08,3;CL:0000708,1.40e-08,3;CL:0000737,6.87e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000513;1.12e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!3.16e-10!312;UBERON:0005256!1.32e-09!143;UBERON:0000481!1.41e-09!347;UBERON:0000483!1.61e-09!309;UBERON:0003104!2.76e-08!238;UBERON:0009142!2.76e-08!238;UBERON:0000475!3.42e-08!365;UBERON:0001444!9.16e-08!48;UBERON:0000490!3.25e-07!138;UBERON:0007625!6.90e-07!11;UBERON:0003102!7.92e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0011135;1.35e-18;5!UBERON:0002216;1.35e-18;5!UBERON:0011134;1.35e-18;5!UBERON:0002209;1.35e-18;5!UBERON:0002213;1.35e-18;5!UBERON:0007844;1.35e-18;5!UBERON:0011138;1.35e-18;5!UBERON:0001130;1.35e-18;5!UBERON:0001066;1.35e-18;5!UBERON:0001468;1.35e-18;5!UBERON:0006444;2.31e-12;2!UBERON:0001995;2.31e-12;2!UBERON:0004715;2.31e-12;2!UBERON:0004905;5.22e-12;8!UBERON:0000982;5.22e-12;8!UBERON:0004770;5.22e-12;8!UBERON:0001043;1.12e-08;3!UBERON:0002418;1.12e-08;3!UBERON:0004755;1.12e-08;3!UBERON:0003210;1.12e-08;3!UBERON:0002242;1.12e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011135,1.35e-18,5;UBERON:0002216,1.35e-18,5;UBERON:0011134,1.35e-18,5;UBERON:0002209,1.35e-18,5;UBERON:0002213,1.35e-18,5;UBERON:0005856,1.35e-18,5;UBERON:0005866,1.35e-18,5;UBERON:0005863,1.35e-18,5;UBERON:0007844,1.35e-18,5;UBERON:0011138,1.35e-18,5;UBERON:0001130,1.35e-18,5;UBERON:0001066,1.35e-18,5;UBERON:0001468,1.35e-18,5;UBERON:0006444,2.90e-12,2;UBERON:0001995,2.90e-12,2;UBERON:0004715,2.90e-12,2;UBERON:0004905,5.22e-12,8;UBERON:0000982,5.22e-12,8;UBERON:0004770,5.22e-12,8;UBERON:0002242,9.66e-09,3;UBERON:0003068,9.66e-09,3;UBERON:0002328,9.66e-09,3;UBERON:0004880,9.66e-09,3;UBERON:0001043,1.04e-08,3;UBERON:0009143,1.04e-08,3;UBERON:0002418,1.30e-08,3;UBERON:0004755,1.30e-08,3;UBERON:0003210,1.40e-08,3 | |||
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|short_description=p@chr3:38017384..38017388,+ | |||
}} |
Revision as of 23:59, 12 September 2013
Short description: | p@chr3:38017384..38017388, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:38017384..38017388, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of esophagus | 2.10e-23 | 1 |
buccal mucosa cell | 2.62e-23 | 1 |
endothelial cell of viscerocranial mucosa | 2.62e-23 | 1 |
keratinized cell of the oral mucosa | 2.62e-23 | 1 |
annulus pulposus cell | 2.90e-12 | 2 |
hepatic stem cell | 3.62e-12 | 2 |
hepatic mesenchymal stem cell | 3.62e-12 | 2 |
enteric smooth muscle cell | 8.31e-09 | 3 |
smooth muscle cell of large intestine | 8.31e-09 | 3 |
smooth muscle cell of colon | 8.31e-09 | 3 |
cardiac muscle cell | 8.96e-09 | 3 |
cardiac muscle myoblast | 8.96e-09 | 3 |
nucleus pulposus cell of intervertebral disc | 9.66e-09 | 3 |
endothelial cell of umbilical vein | 1.21e-08 | 3 |
leptomeningeal cell | 1.40e-08 | 3 |
striated muscle cell | 6.87e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
intervertebral cartilage | 1.35e-18 | 5 |
symphysis | 1.35e-18 | 5 |
nonsynovial joint | 1.35e-18 | 5 |
fibrous joint | 1.35e-18 | 5 |
cartilaginous joint | 1.35e-18 | 5 |
developing mesenchymal condensation | 1.35e-18 | 5 |
pre-cartilage condensation | 1.35e-18 | 5 |
cartilaginous condensation | 1.35e-18 | 5 |
cartilage element | 1.35e-18 | 5 |
post-cranial axial skeletal system | 1.35e-18 | 5 |
vertebral column | 1.35e-18 | 5 |
intervertebral disk | 1.35e-18 | 5 |
intervertebral joint | 1.35e-18 | 5 |
annulus fibrosus | 2.90e-12 | 2 |
fibrocartilage | 2.90e-12 | 2 |
annulus fibrosus disci intervertebralis | 2.90e-12 | 2 |
articulation | 5.22e-12 | 8 |
skeletal joint | 5.22e-12 | 8 |
articular system | 5.22e-12 | 8 |
nucleus pulposus | 9.66e-09 | 3 |
axial mesoderm | 9.66e-09 | 3 |
notochord | 9.66e-09 | 3 |
chordamesoderm | 9.66e-09 | 3 |
esophagus | 1.04e-08 | 3 |
esophageal region | 1.04e-08 | 3 |
cartilage tissue | 1.30e-08 | 3 |
skeletal tissue | 1.30e-08 | 3 |
blood-cerebrospinal fluid barrier | 1.40e-08 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.