FFCP PHASE1:Hg19::chr5:59064199..59064230,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5144|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=8783|TSSclassifier=W|UniProt=|association_with_transcript=214bp_to_uc003jry.2_5end|coexpression_cluster_id=C195|description=CAGE_peak_28_at_PDE4D_5end|id=chr5:59064199..59064230,-|ontology_enrichment_celltype=CL:0002076!2.70e-18!43;CL:0000223!7.57e-15!59;CL:0002368!4.17e-12!13;CL:0000066!1.26e-11!254;CL:0002251!7.49e-10!21;CL:0002202!3.65e-07!9;CL:0002632!3.65e-07!9|ontology_enrichment_celltype_v019=CL:0002076;2.37e-28;42!CL:0002251;1.46e-26;20!CL:0002368;3.43e-14;13!CL:0002166;2.47e-13;3!CL:0002621;7.72e-13;3!CL:0002159;5.34e-10;14!CL:0000575;1.16e-08;2!CL:0000622;1.99e-08;5!CL:0000154;4.44e-07;6!CL:0002202;5.40e-07;9!CL:0002632;5.40e-07;9!CL:0002623;8.58e-07;3|ontology_enrichment_celltype_v019_2=CL:0002076,1.35e-33,42;CL:0002251,1.20e-26,20;CL:0000223,2.05e-25,58;CL:0002368,3.02e-14,13;CL:0002166,2.24e-13,3;CL:0002621,5.74e-13,3;CL:0000066,2.55e-11,253;CL:0002159,4.27e-10,14;CL:0000575,6.96e-09,2;CL:0000622,2.07e-08,5;CL:0002321,2.74e-07,250;CL:0000154,4.59e-07,6;CL:0002202,6.08e-07,9;CL:0002632,6.08e-07,9;CL:0002623,8.60e-07,3|ontology_enrichment_development_v019=CL:0000223;2.16e-11;58!UBERON:0008814;1.16e-08;2!UBERON:0010056;1.16e-08;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:1749;1.59e-09;14|ontology_enrichment_disease_v019_2=DOID:1749,1.70e-09,14|ontology_enrichment_uberon=UBERON:0001004!2.45e-17!72;UBERON:0004119!3.94e-14!169;UBERON:0000925!3.94e-14!169;UBERON:0006595!3.94e-14!169;UBERON:0000065!1.91e-13!53;UBERON:0001007!5.44e-12!155;UBERON:0001555!5.44e-12!155;UBERON:0007026!5.44e-12!155;UBERON:0000161!1.24e-11!35;UBERON:0004921!4.56e-10!129;UBERON:0004185!4.56e-10!129;UBERON:0008947!1.11e-09!38;UBERON:0003258!1.11e-09!38;UBERON:0005178!1.51e-09!34;UBERON:0002224!1.51e-09!34;UBERON:0005181!4.04e-09!35;UBERON:0000072!4.61e-09!46;UBERON:0000077!9.77e-09!130;UBERON:0005153!1.17e-08!37;UBERON:0001041!2.07e-08!98;UBERON:0000166!2.84e-08!21;UBERON:0003729!5.12e-08!5;UBERON:0005157!2.58e-07!51;UBERON:0007196!5.37e-07!14;UBERON:0001558!5.37e-07!14;UBERON:0003343!8.09e-07!4;UBERON:0004785!8.09e-07!4|ontology_enrichment_uberon_v019=UBERON:0000161;1.32e-19;19!UBERON:0000166;1.32e-19;19!UBERON:0003729;2.31e-18;13!UBERON:0000165;3.25e-18;28!UBERON:0000344;3.77e-18;20!UBERON:0000974;1.15e-16;6!UBERON:0003343;4.25e-16;4!UBERON:0004785;4.25e-16;4!UBERON:0001949;7.72e-13;3!UBERON:0001708;4.16e-10;4!UBERON:0008895;4.16e-10;4!UBERON:0001255;5.23e-09;2!UBERON:0006562;5.23e-09;2!UBERON:0001556;5.23e-09;2!UBERON:0003126;5.65e-09;7!UBERON:0001005;5.65e-09;7!UBERON:0007196;1.14e-08;15!UBERON:0001558;1.14e-08;15!UBERON:0003127;1.16e-08;2!UBERON:0007811;1.30e-08;52!UBERON:0001444;1.84e-08;48!UBERON:0003350;2.35e-08;8!UBERON:0000486;2.39e-08;12!UBERON:0000033;2.42e-08;50!UBERON:0011159;3.66e-08;5!UBERON:0001555;1.03e-07;54!UBERON:0001004;1.04e-07;65!UBERON:0000153;1.37e-07;54|ontology_enrichment_uberon_v019_2=UBERON:0000166,3.26e-20,22;UBERON:0000161,4.45e-19,36;UBERON:0003729,1.88e-18,13;UBERON:0000344,3.08e-18,20;UBERON:0000165,1.56e-17,29;UBERON:0000930,1.56e-17,29;UBERON:0000153,6.48e-17,62;UBERON:0007811,6.48e-17,62;UBERON:0001004,6.93e-17,74;UBERON:0000033,7.27e-17,56;UBERON:0003343,3.00e-16,4;UBERON:0004785,3.00e-16,4;UBERON:0003102,1.63e-14,99;UBERON:0001949,5.74e-13,3;UBERON:0001444,6.33e-13,49;UBERON:0004119,7.51e-13,160;UBERON:0000925,7.51e-13,160;UBERON:0006595,7.51e-13,160;UBERON:0001708,3.87e-10,4;UBERON:0008895,3.87e-10,4;UBERON:0000974,5.72e-10,10;UBERON:0001007,6.07e-10,145;UBERON:0001555,6.07e-10,145;UBERON:0007026,6.07e-10,145;UBERON:0001255,3.23e-09,2;UBERON:0001556,3.23e-09,2;UBERON:0003126,4.67e-09,7;UBERON:0001005,4.67e-09,7;UBERON:0003127,7.24e-09,2;UBERON:0007196,1.06e-08,15;UBERON:0001558,1.06e-08,15;UBERON:0003350,1.87e-08,8;UBERON:0011159,3.46e-08,5;UBERON:0000065,4.61e-08,54;UBERON:0010188,6.99e-07,6;UBERON:0002539,6.99e-07,6;UBERON:0008816,6.99e-07,6|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.655324116390517,0.263766978228454,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,0.90361775633475,0.369754010166788,0.0774672005803016,0.284338464974843,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0,0,0,0,0.473447805734733,0,0,0,0,0,0,0.130059347559878,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,1.45718115317017,1.85392221392215,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0.275118041940067,0,0.258416759169329,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,3.87780264148325,2.18047026071267,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.718618141816238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54608682530637,2.72746120590835,2.29443676311203,0,0,0,0,0,0,0,0,0,0,0,0,0,0.482022059766964,0.220587945464788,0,0.474541238222193,0,0.196221465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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5144 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8783 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=214bp_to_uc003jry.2_5end | |||
|coexpression_cluster_id=C195 | |||
|description=CAGE_peak_28_at_PDE4D_5end | |||
|id=chr5:59064199..59064230,- | |||
|ontology_enrichment_celltype=CL:0002076!2.70e-18!43;CL:0000223!7.57e-15!59;CL:0002368!4.17e-12!13;CL:0000066!1.26e-11!254;CL:0002251!7.49e-10!21;CL:0002202!3.65e-07!9;CL:0002632!3.65e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.37e-28;42!CL:0002251;1.46e-26;20!CL:0002368;3.43e-14;13!CL:0002166;2.47e-13;3!CL:0002621;7.72e-13;3!CL:0002159;5.34e-10;14!CL:0000575;1.16e-08;2!CL:0000622;1.99e-08;5!CL:0000154;4.44e-07;6!CL:0002202;5.40e-07;9!CL:0002632;5.40e-07;9!CL:0002623;8.58e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.35e-33,42;CL:0002251,1.20e-26,20;CL:0000223,2.05e-25,58;CL:0002368,3.02e-14,13;CL:0002166,2.24e-13,3;CL:0002621,5.74e-13,3;CL:0000066,2.55e-11,253;CL:0002159,4.27e-10,14;CL:0000575,6.96e-09,2;CL:0000622,2.07e-08,5;CL:0002321,2.74e-07,250;CL:0000154,4.59e-07,6;CL:0002202,6.08e-07,9;CL:0002632,6.08e-07,9;CL:0002623,8.60e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000223;2.16e-11;58!UBERON:0008814;1.16e-08;2!UBERON:0010056;1.16e-08;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1749;1.59e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.70e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0001004!2.45e-17!72;UBERON:0004119!3.94e-14!169;UBERON:0000925!3.94e-14!169;UBERON:0006595!3.94e-14!169;UBERON:0000065!1.91e-13!53;UBERON:0001007!5.44e-12!155;UBERON:0001555!5.44e-12!155;UBERON:0007026!5.44e-12!155;UBERON:0000161!1.24e-11!35;UBERON:0004921!4.56e-10!129;UBERON:0004185!4.56e-10!129;UBERON:0008947!1.11e-09!38;UBERON:0003258!1.11e-09!38;UBERON:0005178!1.51e-09!34;UBERON:0002224!1.51e-09!34;UBERON:0005181!4.04e-09!35;UBERON:0000072!4.61e-09!46;UBERON:0000077!9.77e-09!130;UBERON:0005153!1.17e-08!37;UBERON:0001041!2.07e-08!98;UBERON:0000166!2.84e-08!21;UBERON:0003729!5.12e-08!5;UBERON:0005157!2.58e-07!51;UBERON:0007196!5.37e-07!14;UBERON:0001558!5.37e-07!14;UBERON:0003343!8.09e-07!4;UBERON:0004785!8.09e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000161;1.32e-19;19!UBERON:0000166;1.32e-19;19!UBERON:0003729;2.31e-18;13!UBERON:0000165;3.25e-18;28!UBERON:0000344;3.77e-18;20!UBERON:0000974;1.15e-16;6!UBERON:0003343;4.25e-16;4!UBERON:0004785;4.25e-16;4!UBERON:0001949;7.72e-13;3!UBERON:0001708;4.16e-10;4!UBERON:0008895;4.16e-10;4!UBERON:0001255;5.23e-09;2!UBERON:0006562;5.23e-09;2!UBERON:0001556;5.23e-09;2!UBERON:0003126;5.65e-09;7!UBERON:0001005;5.65e-09;7!UBERON:0007196;1.14e-08;15!UBERON:0001558;1.14e-08;15!UBERON:0003127;1.16e-08;2!UBERON:0007811;1.30e-08;52!UBERON:0001444;1.84e-08;48!UBERON:0003350;2.35e-08;8!UBERON:0000486;2.39e-08;12!UBERON:0000033;2.42e-08;50!UBERON:0011159;3.66e-08;5!UBERON:0001555;1.03e-07;54!UBERON:0001004;1.04e-07;65!UBERON:0000153;1.37e-07;54 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000166,3.26e-20,22;UBERON:0000161,4.45e-19,36;UBERON:0003729,1.88e-18,13;UBERON:0000344,3.08e-18,20;UBERON:0000165,1.56e-17,29;UBERON:0000930,1.56e-17,29;UBERON:0000153,6.48e-17,62;UBERON:0007811,6.48e-17,62;UBERON:0001004,6.93e-17,74;UBERON:0000033,7.27e-17,56;UBERON:0003343,3.00e-16,4;UBERON:0004785,3.00e-16,4;UBERON:0003102,1.63e-14,99;UBERON:0001949,5.74e-13,3;UBERON:0001444,6.33e-13,49;UBERON:0004119,7.51e-13,160;UBERON:0000925,7.51e-13,160;UBERON:0006595,7.51e-13,160;UBERON:0001708,3.87e-10,4;UBERON:0008895,3.87e-10,4;UBERON:0000974,5.72e-10,10;UBERON:0001007,6.07e-10,145;UBERON:0001555,6.07e-10,145;UBERON:0007026,6.07e-10,145;UBERON:0001255,3.23e-09,2;UBERON:0001556,3.23e-09,2;UBERON:0003126,4.67e-09,7;UBERON:0001005,4.67e-09,7;UBERON:0003127,7.24e-09,2;UBERON:0007196,1.06e-08,15;UBERON:0001558,1.06e-08,15;UBERON:0003350,1.87e-08,8;UBERON:0011159,3.46e-08,5;UBERON:0000065,4.61e-08,54;UBERON:0010188,6.99e-07,6;UBERON:0002539,6.99e-07,6;UBERON:0008816,6.99e-07,6 | |||
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|short_description=p28@PDE4D | |||
}} |
Revision as of 16:02, 13 September 2013
Short description: | p28@PDE4D |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_28_at_PDE4D_5end |
Coexpression cluster: | C195_Small_Gingival_Bronchial_Smooth_mesenchymal_Urothelial_Tracheal |
Association with transcript: | 214bp_to_uc003jry.2_5end |
EntrezGene: | PDE4D |
HGNC: | 8783 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.35e-33 | 42 |
epithelial cell of alimentary canal | 1.20e-26 | 20 |
endodermal cell | 2.05e-25 | 58 |
respiratory epithelial cell | 3.02e-14 | 13 |
epithelial cell of Malassez | 2.24e-13 | 3 |
gingival epithelial cell | 5.74e-13 | 3 |
epithelial cell | 2.55e-11 | 253 |
general ecto-epithelial cell | 4.27e-10 | 14 |
corneal epithelial cell | 6.96e-09 | 2 |
acinar cell | 2.07e-08 | 5 |
embryonic cell | 2.74e-07 | 250 |
protein secreting cell | 4.59e-07 | 6 |
epithelial cell of tracheobronchial tree | 6.08e-07 | 9 |
epithelial cell of lower respiratory tract | 6.08e-07 | 9 |
acinar cell of salivary gland | 8.60e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
oral opening | 3.26e-20 | 22 |
orifice | 4.45e-19 | 36 |
mouth mucosa | 1.88e-18 | 13 |
mucosa | 3.08e-18 | 20 |
mouth | 1.56e-17 | 29 |
stomodeum | 1.56e-17 | 29 |
anterior region of body | 6.48e-17 | 62 |
craniocervical region | 6.48e-17 | 62 |
respiratory system | 6.93e-17 | 74 |
head | 7.27e-17 | 56 |
mucosa of oral region | 3.00e-16 | 4 |
respiratory system mucosa | 3.00e-16 | 4 |
surface structure | 1.63e-14 | 99 |
gingival epithelium | 5.74e-13 | 3 |
subdivision of head | 6.33e-13 | 49 |
endoderm-derived structure | 7.51e-13 | 160 |
endoderm | 7.51e-13 | 160 |
presumptive endoderm | 7.51e-13 | 160 |
jaw skeleton | 3.87e-10 | 4 |
splanchnocranium | 3.87e-10 | 4 |
neck | 5.72e-10 | 10 |
digestive system | 6.07e-10 | 145 |
digestive tract | 6.07e-10 | 145 |
primitive gut | 6.07e-10 | 145 |
urinary bladder | 3.23e-09 | 2 |
lower urinary tract | 3.23e-09 | 2 |
trachea | 4.67e-09 | 7 |
respiratory airway | 4.67e-09 | 7 |
open tracheal system trachea | 7.24e-09 | 2 |
tracheobronchial tree | 1.06e-08 | 15 |
lower respiratory tract | 1.06e-08 | 15 |
epithelium of mucosa | 1.87e-08 | 8 |
primary subdivision of cranial skeletal system | 3.46e-08 | 5 |
respiratory tract | 4.61e-08 | 54 |
protuberance | 6.99e-07 | 6 |
pharyngeal arch | 6.99e-07 | 6 |
embryonic head | 6.99e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.70e-09 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.