FFCP PHASE1:Hg19::chr5:174151648..174151659,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4488|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7392|TSSclassifier=S|UniProt=D6RIS4|association_with_transcript=43bp_to_ENST00000507785_5end|coexpression_cluster_id=C2819|description=CAGE_peak_3_at_MSX2_5end|id=chr5:174151648..174151659,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000097;1.65e-09;5!CL:0002537;5.77e-09;5!CL:0000214;1.75e-07;3!CL:0000039;3.54e-07;7!CL:0000586;3.54e-07;7|ontology_enrichment_celltype_v019_2=CL:0000097,1.37e-09,5;CL:0002028,1.37e-09,5;CL:0002537,5.86e-09,5;CL:0000214,1.54e-07,3;CL:0000039,3.27e-07,7;CL:0000586,3.27e-07,7|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:0050687!3.18e-07!143;DOID:299!4.29e-07!25;DOID:305!7.44e-07!106|ontology_enrichment_disease_v019=DOID:5093;1.34e-11;4!DOID:1612;1.34e-11;4|ontology_enrichment_disease_v019_2=DOID:5093,1.19e-11,4;DOID:1612,1.19e-11,4;DOID:0050687,4.27e-08,143|ontology_enrichment_uberon=UBERON:0005631!9.33e-09!14;UBERON:0000158!9.33e-09!14;UBERON:0003124!5.00e-07!7;UBERON:0004923!5.68e-07!57|ontology_enrichment_uberon_v019=UBERON:0001264;5.90e-08;10!UBERON:0005631;1.23e-07;10!UBERON:0000158;1.23e-07;10!UBERON:0006915;1.75e-07;3!UBERON:0007616;1.75e-07;3!UBERON:0002217;1.75e-07;3!UBERON:0002018;1.75e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.80e-11,14;UBERON:0000158,1.80e-11,14;UBERON:0001264,5.44e-08,10;UBERON:0006915,1.54e-07,3;UBERON:0007616,1.54e-07,3;UBERON:0002217,1.54e-07,3;UBERON:0002018,1.54e-07,3|phase1_expression=0,0.642301571672949,0,0,0,0,0,0,0.522371256399677,0,0,0.873765488520689,0.263766978228454,0,0,0,0,0,0,0.984968464614303,0.408001382488506,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0.411202997999018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.361439152384566,0,0,0.795285947051099,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0.132409180813219,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0.298897361103602,0,0,0.140450806702248,0.204154171254893,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0.45071417671979,0.113432183160021,0.179389635688862,0.640672166455702,0,0.300091096084402,0.309157587715317,0,0,0.168776332241266,0.0974370051611986,0,0.0920498986422993,0,0,0.201504196455281,0,0.193260853163297,0.272746120590835,0,0.243947412259191,0.132529768321485,0.464775771478074,0.518305275076852,0.504641701751257,0,0,0,1.38134921352481,0.464367928031979,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72183813960359,0,0.109750285408626,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,2.37061319387782,0.858486162094873,0,0,0,0,0.503946384596579,0.141775097242386,0.268675568108545,0,0.383382679165211,0.492663237895943,0.44024217006613,4.56121854189699,2.01767934783746,1.76739406796932,0.253991577168676,0.763976851116555,0,0,0,0.300343057843917,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0.602878754119172,0.871533458600294,0.099972991182057,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0.356857977594324,0.157702415033935,0,0.601892199455438,0,1.03473071292505,0,0,0,0.587403472388222,0.343143423810856,0,0,0,0.909382714338778,1.66435439510497,0.604780586659361,0.248107807818777,0,0,0,0,0,0,0,0,0,0,0,1.20859449591622,0,0,1.03333003348146,0.546273504020151,0.131124414959424,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0,0.223874754722178,0,0,0.256450125116389,0.328014645699706,0,0.515205058238611,0,0.41254749960294,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308033580176089,0.532306030317022,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0.421258456238981,0,0.243713489631284,0,0,0.565621727814851,0,0,0,0,0,0.655894752046633,0.405820753925408,0,0,0.143411352204052,0,0,0,0.211107635297664,1.31717957183961,0,0,0,0,0,0.282431402330337,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,3.09789806269672,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.614481528616916,0,0.166849141711909,0,0,0,0.270455678475983,0,0,1.12284324244932,0.439524537815682,0,0,0.568272293612826,1.90995587790152,1.18785872333055,1.22864280839693,0,0,0,0,0.63337622438398,0.398495976502139,0,0,0,0,0.622079175323615,0,0,0,1.28236427328014,0,0,0,0.185536196323703,0,2.60427761085233,1.31189999994294,0.724999575434793,0.455173793141999,0,2.12748913591143,0,0,0,0,0,0,0,0.295547618953547,0,0.544692317594951,1.25481369850743,0.384751292518985,2.50672522863403,10.6059396018508,7.80891506365018,2.7161842980502,0.31900115973192,1.00757352742049,0.533034776018635,0,0,0,0,0,0,0,0,0,0.163232808159148,1.69623685720729,0,0.995261931078505,0.0884575645033392,0.611030144933625,0,0,0,0.269604531922708,0,0,0,0.391329237864179,0,0,0,0,0.821425535170343,0.150323419414493,0,0,0.9929758676264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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4488 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7392 | |||
|TSSclassifier=S | |||
|UniProt=D6RIS4 | |||
|association_with_transcript=43bp_to_ENST00000507785_5end | |||
|coexpression_cluster_id=C2819 | |||
|description=CAGE_peak_3_at_MSX2_5end | |||
|id=chr5:174151648..174151659,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000097;1.65e-09;5!CL:0002537;5.77e-09;5!CL:0000214;1.75e-07;3!CL:0000039;3.54e-07;7!CL:0000586;3.54e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,1.37e-09,5;CL:0002028,1.37e-09,5;CL:0002537,5.86e-09,5;CL:0000214,1.54e-07,3;CL:0000039,3.27e-07,7;CL:0000586,3.27e-07,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!3.18e-07!143;DOID:299!4.29e-07!25;DOID:305!7.44e-07!106 | |||
|ontology_enrichment_disease_v019=DOID:5093;1.34e-11;4!DOID:1612;1.34e-11;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,1.19e-11,4;DOID:1612,1.19e-11,4;DOID:0050687,4.27e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0005631!9.33e-09!14;UBERON:0000158!9.33e-09!14;UBERON:0003124!5.00e-07!7;UBERON:0004923!5.68e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0001264;5.90e-08;10!UBERON:0005631;1.23e-07;10!UBERON:0000158;1.23e-07;10!UBERON:0006915;1.75e-07;3!UBERON:0007616;1.75e-07;3!UBERON:0002217;1.75e-07;3!UBERON:0002018;1.75e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.80e-11,14;UBERON:0000158,1.80e-11,14;UBERON:0001264,5.44e-08,10;UBERON:0006915,1.54e-07,3;UBERON:0007616,1.54e-07,3;UBERON:0002217,1.54e-07,3;UBERON:0002018,1.54e-07,3 | |||
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| |||
|short_description=p3@MSX2 | |||
}} |
Revision as of 14:58, 13 September 2013
Short description: | p3@MSX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_MSX2_5end |
Coexpression cluster: | C2819_choriocarcinoma_small_synovial_pancreatic_teratocarcinoma_cholangiocellular_Wilms |
Association with transcript: | 43bp_to_ENST00000507785_5end |
EntrezGene: | MSX2 |
HGNC: | 7392 |
UniProt: | D6RIS4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 1.37e-09 | 5 |
basophil mast progenitor cell | 1.37e-09 | 5 |
amnion mesenchymal stem cell | 5.86e-09 | 5 |
synovial cell | 1.54e-07 | 3 |
germ line cell | 3.27e-07 | 7 |
germ cell | 3.27e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.80e-11 | 14 |
membranous layer | 1.80e-11 | 14 |
pancreas | 5.44e-08 | 10 |
stratified squamous epithelium | 1.54e-07 | 3 |
layer of synovial tissue | 1.54e-07 | 3 |
synovial joint | 1.54e-07 | 3 |
synovial membrane of synovial joint | 1.54e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 1.19e-11 | 4 |
breast cancer | 1.19e-11 | 4 |
cell type cancer | 4.27e-08 | 143 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.