FFCP PHASE1:Hg19::chr7:2689197..2689244,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr7:2689197..2689244,+|id=chr7:2689197..2689244,+|ontology_enrichment_celltype=CL:0000144!1.88e-14!625;CL:0002371!2.58e-13!591;CL:0000548!2.20e-11!679;CL:0000004!2.20e-11!679;CL:0000255!2.20e-11!679;CL:0000012!9.94e-11!682;CL:0002194!1.10e-09!63;CL:0000576!1.10e-09!63;CL:0000040!1.10e-09!63;CL:0000559!1.10e-09!63;CL:0002009!4.05e-09!65;CL:0002321!5.82e-09!248;CL:0000220!9.37e-09!246;CL:0000839!1.19e-08!70;CL:0000557!1.40e-08!71;CL:0002057!2.29e-08!42;CL:0000147!1.73e-07!14;CL:0000766!2.66e-07!76;CL:0000860!4.68e-07!45;CL:0000063!7.82e-07!578;CL:0000003!8.66e-07!722|ontology_enrichment_celltype_v019=CL:0000473;9.59e-14;39!CL:0000234;9.59e-14;39!CL:0000235;3.93e-12;6!CL:1000449;1.54e-11;15!CL:1000497;6.59e-10;17!CL:0002518;6.59e-10;17!CL:0000860;1.36e-09;33!CL:0002057;1.36e-09;33!CL:1000507;4.81e-09;10!CL:1000494;4.81e-09;10!CL:0000669;1.45e-08;4!CL:0000147;1.48e-08;14!CL:0002567;7.88e-08;3!CL:0002681;1.25e-07;12!CL:0002584;1.25e-07;12!CL:0000148;1.41e-07;10!CL:1000746;1.98e-07;7!CL:1000612;1.98e-07;7!CL:0000710;7.19e-07;20|ontology_enrichment_celltype_v019_2=CL:0000473,1.33e-13,48;CL:0000234,1.33e-13,48;CL:0000235,3.09e-12,6;CL:0002194,6.23e-12,59;CL:0000576,6.23e-12,59;CL:0000040,6.23e-12,59;CL:0000559,6.23e-12,59;CL:1000449,1.74e-11,15;CL:0002009,2.43e-11,61;CL:0000839,5.02e-10,66;CL:1000497,7.32e-10,17;CL:0002518,7.32e-10,17;CL:0000557,8.69e-10,67;CL:0000669,4.97e-09,4;CL:1000507,6.30e-09,10;CL:1000494,6.30e-09,10;CL:0000147,9.16e-09,14;CL:0000766,1.06e-08,72;CL:0002567,7.80e-08,3;CL:0002681,1.21e-07,12;CL:0002584,1.21e-07,12;CL:0000860,1.42e-07,42;CL:0002057,1.42e-07,42;CL:0000148,1.57e-07,10;CL:0000541,1.57e-07,10;CL:1000746,1.76e-07,7;CL:1000612,1.76e-07,7;CL:0000710,9.24e-07,20|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003081!4.40e-09!216;UBERON:0004765!1.67e-08!101;UBERON:0001434!1.67e-08!101;UBERON:0002371!5.91e-08!80;UBERON:0002405!1.46e-07!115;UBERON:0001474!1.73e-07!86;UBERON:0002204!5.05e-07!167;UBERON:0000468!8.08e-07!659|ontology_enrichment_uberon_v019=UBERON:0006555;1.54e-11;15!UBERON:0004819;1.54e-11;15!UBERON:0001285;1.54e-11;15!UBERON:0007684;1.54e-11;15!UBERON:0004211;4.81e-09;10!UBERON:0009773;4.81e-09;10!UBERON:0001231;4.81e-09;10!UBERON:0004810;4.81e-09;10!UBERON:0001225;1.25e-07;12!UBERON:0008987;1.25e-07;12!UBERON:0000353;1.68e-07;15!UBERON:0000074;1.98e-07;7!UBERON:0001229;1.98e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0004211,1.74e-11,15;UBERON:0009773,1.74e-11,15;UBERON:0001231,1.74e-11,15;UBERON:0001285,1.74e-11,15;UBERON:0007684,1.74e-11,15;UBERON:0004208,1.74e-11,15;UBERON:0003081,4.34e-11,203;UBERON:0006555,1.27e-10,16;UBERON:0004819,1.27e-10,16;UBERON:0000926,5.30e-09,315;UBERON:0004120,5.30e-09,315;UBERON:0006603,5.30e-09,315;UBERON:0004810,6.30e-09,10;UBERON:0002371,6.07e-08,76;UBERON:0001474,9.92e-08,82;UBERON:0001225,1.21e-07,12;UBERON:0008987,1.21e-07,12;UBERON:0000353,1.64e-07,15;UBERON:0010532,1.76e-07,7;UBERON:0000074,1.76e-07,7;UBERON:0001229,1.76e-07,7;UBERON:0001230,1.76e-07,7;UBERON:0003220,1.76e-07,7;UBERON:0005749,1.76e-07,7;UBERON:0004199,1.76e-07,7;UBERON:0004209,1.76e-07,7;UBERON:0004198,1.76e-07,7|phase1_expression=0,1.71280419112787,0.281908808191942,0,1.34088328328186,0,0,1.26343974685366,0.783556884599516,0.245733936501509,1.39560233594486,0.655324116390517,1.05506791291381,0.990130823680373,0.662794751455832,0,0,0,0.975865597581014,0.861847406537515,1.83600622119828,0,0,1.09499540058307,1.00434111675842,0.152826811495903,0.328402357799783,0.393553906568396,0,0,0.464448369948228,0,1.204823675113,0.739508020333575,0,0,0,0,0.802177789880567,0.868043482863407,0.447830948479849,1.29557466407592,0.515151135268373,1.59938062657521,1.88937971844405,0.727752183563449,0.929716147622738,1.23350366406548,0.309706370895104,0.863077176966451,0.768482119587302,0.47296445977717,1.03423704220986,1.29096936716765,0,1.50593871634084,1.09162460023138,0.449446968890169,1.53041946185451,0.962787081228281,1.27867425159808,1.9791078011203,1.59570926097305,0.852449501065388,0.870627715885752,0,2.4912889959823,2.26123798731069,2.08593167368081,0.434377689410233,1.21079900526674,1.10483290796269,0.316462387440884,0.422510572623884,0.425208599930087,0.209658645508376,0.112328631146495,0.300353785683013,0,0,0.39783335439818,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0.196709770113833,0,0,0.334372990781356,0,0,0,0,0,0,0,0,0.130059347559878,0.164437904603676,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.434539556882471,0,0.973269740605272,0.567208902984407,0.443458794925128,0.43917392846563,0.196468613246569,0.728590576585084,0,0.97364218096405,0.522389211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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr7:2689197..2689244,+ | |||
|id=chr7:2689197..2689244,+ | |||
|ontology_enrichment_celltype=CL:0000144!1.88e-14!625;CL:0002371!2.58e-13!591;CL:0000548!2.20e-11!679;CL:0000004!2.20e-11!679;CL:0000255!2.20e-11!679;CL:0000012!9.94e-11!682;CL:0002194!1.10e-09!63;CL:0000576!1.10e-09!63;CL:0000040!1.10e-09!63;CL:0000559!1.10e-09!63;CL:0002009!4.05e-09!65;CL:0002321!5.82e-09!248;CL:0000220!9.37e-09!246;CL:0000839!1.19e-08!70;CL:0000557!1.40e-08!71;CL:0002057!2.29e-08!42;CL:0000147!1.73e-07!14;CL:0000766!2.66e-07!76;CL:0000860!4.68e-07!45;CL:0000063!7.82e-07!578;CL:0000003!8.66e-07!722 | |||
|ontology_enrichment_celltype_v019=CL:0000473;9.59e-14;39!CL:0000234;9.59e-14;39!CL:0000235;3.93e-12;6!CL:1000449;1.54e-11;15!CL:1000497;6.59e-10;17!CL:0002518;6.59e-10;17!CL:0000860;1.36e-09;33!CL:0002057;1.36e-09;33!CL:1000507;4.81e-09;10!CL:1000494;4.81e-09;10!CL:0000669;1.45e-08;4!CL:0000147;1.48e-08;14!CL:0002567;7.88e-08;3!CL:0002681;1.25e-07;12!CL:0002584;1.25e-07;12!CL:0000148;1.41e-07;10!CL:1000746;1.98e-07;7!CL:1000612;1.98e-07;7!CL:0000710;7.19e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.33e-13,48;CL:0000234,1.33e-13,48;CL:0000235,3.09e-12,6;CL:0002194,6.23e-12,59;CL:0000576,6.23e-12,59;CL:0000040,6.23e-12,59;CL:0000559,6.23e-12,59;CL:1000449,1.74e-11,15;CL:0002009,2.43e-11,61;CL:0000839,5.02e-10,66;CL:1000497,7.32e-10,17;CL:0002518,7.32e-10,17;CL:0000557,8.69e-10,67;CL:0000669,4.97e-09,4;CL:1000507,6.30e-09,10;CL:1000494,6.30e-09,10;CL:0000147,9.16e-09,14;CL:0000766,1.06e-08,72;CL:0002567,7.80e-08,3;CL:0002681,1.21e-07,12;CL:0002584,1.21e-07,12;CL:0000860,1.42e-07,42;CL:0002057,1.42e-07,42;CL:0000148,1.57e-07,10;CL:0000541,1.57e-07,10;CL:1000746,1.76e-07,7;CL:1000612,1.76e-07,7;CL:0000710,9.24e-07,20 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!4.40e-09!216;UBERON:0004765!1.67e-08!101;UBERON:0001434!1.67e-08!101;UBERON:0002371!5.91e-08!80;UBERON:0002405!1.46e-07!115;UBERON:0001474!1.73e-07!86;UBERON:0002204!5.05e-07!167;UBERON:0000468!8.08e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.54e-11;15!UBERON:0004819;1.54e-11;15!UBERON:0001285;1.54e-11;15!UBERON:0007684;1.54e-11;15!UBERON:0004211;4.81e-09;10!UBERON:0009773;4.81e-09;10!UBERON:0001231;4.81e-09;10!UBERON:0004810;4.81e-09;10!UBERON:0001225;1.25e-07;12!UBERON:0008987;1.25e-07;12!UBERON:0000353;1.68e-07;15!UBERON:0000074;1.98e-07;7!UBERON:0001229;1.98e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,1.74e-11,15;UBERON:0009773,1.74e-11,15;UBERON:0001231,1.74e-11,15;UBERON:0001285,1.74e-11,15;UBERON:0007684,1.74e-11,15;UBERON:0004208,1.74e-11,15;UBERON:0003081,4.34e-11,203;UBERON:0006555,1.27e-10,16;UBERON:0004819,1.27e-10,16;UBERON:0000926,5.30e-09,315;UBERON:0004120,5.30e-09,315;UBERON:0006603,5.30e-09,315;UBERON:0004810,6.30e-09,10;UBERON:0002371,6.07e-08,76;UBERON:0001474,9.92e-08,82;UBERON:0001225,1.21e-07,12;UBERON:0008987,1.21e-07,12;UBERON:0000353,1.64e-07,15;UBERON:0010532,1.76e-07,7;UBERON:0000074,1.76e-07,7;UBERON:0001229,1.76e-07,7;UBERON:0001230,1.76e-07,7;UBERON:0003220,1.76e-07,7;UBERON:0005749,1.76e-07,7;UBERON:0004199,1.76e-07,7;UBERON:0004209,1.76e-07,7;UBERON:0004198,1.76e-07,7 | |||
|phase1_expression=0,1.71280419112787,0.281908808191942,0,1.34088328328186,0,0,1.26343974685366,0.783556884599516,0.245733936501509,1.39560233594486,0.655324116390517,1.05506791291381,0.990130823680373,0.662794751455832,0,0,0,0.975865597581014,0.861847406537515,1.83600622119828,0,0,1.09499540058307,1.00434111675842,0.152826811495903,0.328402357799783,0.393553906568396,0,0,0.464448369948228,0,1.204823675113,0.739508020333575,0,0,0,0,0.802177789880567,0.868043482863407,0.447830948479849,1.29557466407592,0.515151135268373,1.59938062657521,1.88937971844405,0.727752183563449,0.929716147622738,1.23350366406548,0.309706370895104,0.863077176966451,0.768482119587302,0.47296445977717,1.03423704220986,1.29096936716765,0,1.50593871634084,1.09162460023138,0.449446968890169,1.53041946185451,0.962787081228281,1.27867425159808,1.9791078011203,1.59570926097305,0.852449501065388,0.870627715885752,0,2.4912889959823,2.26123798731069,2.08593167368081,0.434377689410233,1.21079900526674,1.10483290796269,0.316462387440884,0.422510572623884,0.425208599930087,0.209658645508376,0.112328631146495,0.300353785683013,0,0,0.39783335439818,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0.196709770113833,0,0,0.334372990781356,0,0,0,0,0,0,0,0,0.130059347559878,0.164437904603676,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.434539556882471,0,0.973269740605272,0.567208902984407,0.443458794925128,0.43917392846563,0.196468613246569,0.728590576585084,0,0.97364218096405,0.522389211897802,1.46253756570752,0,0,0,0.79504962946682,0,0.347140501607594,0.56530794192401,0,0.825354125820202,1.67195973229448,0.258416759169329,0.71153252537342,0.66944122552934,1.20848795132744,0,1.46437234528902,0,0.81014194788176,0.446498641420399,0,0.450445921933289,1.53316637465883,2.84779697870439,0.549605231791222,0,0,0,0.993943903390637,0.379891534993739,0,0.860509862246441,1.06400514659507,0,2.1349799145941,1.48000529050296,0.622422070799533,0.808264032418128,0.163461903113459,0.454072282934794,0,0.468642863667593,0.312160076830321,0,0.149448680551801,0.117434498643765,0.323745888736263,0.280901613404497,0,0.245668634623536,0.309977343527296,0,0.247266929278557,0,0.718618141816238,0.505008341862199,0.500474079487857,0,1.31693286264251,0.919463387397059,0.300476117813194,0.113432183160021,0,0.427114777637135,0.423863802319124,0.900273288253207,0.206105058476878,0,0.37223371266318,0,0.389748020644795,0.252433774244115,0.644349290496095,0.323292113637624,0,0.403008392910561,0.169560592310488,0.386521706326594,0.272746120590835,0,0.487894824518382,0.397589304964456,0.464775771478074,0.518305275076852,0.504641701751257,0,1.56449532329816,1.92972281457866,1.38134921352481,0.464367928031979,0.721879481669586,0.354920400119532,0,0.723033089650446,0,0.217879444092406,0.474541238222193,0,0.392442930250692,0,0.738155454624648,1.40241773803446,0.8231480226628,1.47008711385542,0,0.982827216677626,0,0,0.122988438543114,0.514703430895577,0.329250856225877,1.1240175325762,0.100528972411631,0.277765335475589,0.325808305310325,1.03993478527958,0,0.34779121492523,0.587043471179108,0.866198686566443,0.462985512576611,0.570762456703795,0,0,1.23108503043699,1.8720341211139,1.33768046059855,0,0.335964256397719,0.567100388969546,0.0895585227028483,0,0,0,0.616339038092582,0.414656231081544,0.288239906833923,0.37872730027914,3.23839260890062,5.34783795781589,3.51652341630141,10.2643467613623,1.33675740514321,0.901029173531752,3.42991719156694,0.672786506072164,1.30788020649984,0.4400297149257,0.387815147273333,0,0,0.531876233169741,2.08014873822732,0.257207374262142,0,0.799266537048298,0.285955987316295,1.62786481617433,1.64648067356154,0,0.355391948742546,1.58390374586686,0.301439377059586,0.871533458600294,0.99972991182057,3.64871341923571,2.51128545716063,8.43335757932127,0,0,0,0.144781306667579,0.821905290201534,0,0.112085143993527,0,0,0.128343036279748,2.54094624222463,2.60279707715243,0,0,0.637938751653163,0,0,0.414415513436035,0.36807447515742,0,0.271265023699736,1.24782516918484,1.60586089917446,1.10391690523754,0.585707074963566,0.601892199455438,0,0,1.32845119707087,0.368738337083406,0.955719759148911,1.76221041716467,1.71571711905428,0,0,0.106727557803444,0,3.32870879020994,1.81434175997808,0,0,0.841980283299221,0.256278298511402,1.53512174720011,0.64341568457443,0,0.154209693802656,0.532685175939381,0.574890092096664,1.55776328755086,0.232420756919918,0.604297247958111,3.00759705454927,0.276242966807689,0.229628896329213,0.546273504020151,1.44236856455367,2.25599806453706,0.231046011313244,1.56869953835371,1.46139224653261,1.05551628892876,0,1.53084334748864,0.863663664408557,6.16909010761157,2.16757150035082,3.51182841698397,0.254876273045038,0.831076008928724,1.34324852833307,0,0,1.79515087581472,1.64007322849853,0.650756789328606,0.103041011647722,0.0915694648183434,0.165018999841176,0.574265537996172,1.30012049207304,3.21367859688319,0.870036464629098,0,0.307007349452259,0.137836572484531,0.537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| |||
|short_description=p@chr7:2689197..2689244,+ | |||
}} |
Revision as of 00:41, 14 September 2013
Short description: | p@chr7:2689197..2689244, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr7:2689197..2689244, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.33e-13 | 48 |
phagocyte | 1.33e-13 | 48 |
macrophage | 3.09e-12 | 6 |
monopoietic cell | 6.23e-12 | 59 |
monocyte | 6.23e-12 | 59 |
monoblast | 6.23e-12 | 59 |
promonocyte | 6.23e-12 | 59 |
epithelial cell of nephron | 1.74e-11 | 15 |
macrophage dendritic cell progenitor | 2.43e-11 | 61 |
myeloid lineage restricted progenitor cell | 5.02e-10 | 66 |
kidney cell | 7.32e-10 | 17 |
kidney epithelial cell | 7.32e-10 | 17 |
granulocyte monocyte progenitor cell | 8.69e-10 | 67 |
pericyte cell | 4.97e-09 | 4 |
kidney tubule cell | 6.30e-09 | 10 |
nephron tubule epithelial cell | 6.30e-09 | 10 |
pigment cell | 9.16e-09 | 14 |
myeloid leukocyte | 1.06e-08 | 72 |
light melanocyte | 7.80e-08 | 3 |
kidney cortical cell | 1.21e-07 | 12 |
renal cortical epithelial cell | 1.21e-07 | 12 |
classical monocyte | 1.42e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.42e-07 | 42 |
melanocyte | 1.57e-07 | 10 |
melanoblast | 1.57e-07 | 10 |
glomerular cell | 1.76e-07 | 7 |
kidney corpuscule cell | 1.76e-07 | 7 |
neurecto-epithelial cell | 9.24e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 1.74e-11 | 15 |
renal tubule | 1.74e-11 | 15 |
nephron tubule | 1.74e-11 | 15 |
nephron | 1.74e-11 | 15 |
uriniferous tubule | 1.74e-11 | 15 |
nephrogenic mesenchyme | 1.74e-11 | 15 |
lateral plate mesoderm | 4.34e-11 | 203 |
excretory tube | 1.27e-10 | 16 |
kidney epithelium | 1.27e-10 | 16 |
mesoderm | 5.30e-09 | 315 |
mesoderm-derived structure | 5.30e-09 | 315 |
presumptive mesoderm | 5.30e-09 | 315 |
nephron tubule epithelium | 6.30e-09 | 10 |
bone marrow | 6.07e-08 | 76 |
bone element | 9.92e-08 | 82 |
cortex of kidney | 1.21e-07 | 12 |
renal parenchyma | 1.21e-07 | 12 |
parenchyma | 1.64e-07 | 15 |
primitive nephron | 1.76e-07 | 7 |
renal glomerulus | 1.76e-07 | 7 |
renal corpuscle | 1.76e-07 | 7 |
glomerular capsule | 1.76e-07 | 7 |
metanephric mesenchyme | 1.76e-07 | 7 |
glomerular tuft | 1.76e-07 | 7 |
S-shaped body | 1.76e-07 | 7 |
renal vesicle | 1.76e-07 | 7 |
comma-shaped body | 1.76e-07 | 7 |
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