FFCP PHASE1:Hg19::chr7:127544658..127544672,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=27044|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=30646|TSSclassifier=S|UniProt=|association_with_transcript=-6bp_to_ENST00000492840_5end|coexpression_cluster_id=C41|description=CAGE_peak_7_at_SND1_5end|id=chr7:127544658..127544672,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0003056;6.76e-18;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005743!3.56e-30!86;UBERON:0003075!1.22e-27!86;UBERON:0007284!1.22e-27!86;UBERON:0000073!5.77e-27!94;UBERON:0001016!5.77e-27!94;UBERON:0002346!3.09e-26!90;UBERON:0001017!9.78e-26!82;UBERON:0000955!8.02e-25!69;UBERON:0006238!8.02e-25!69;UBERON:0003056!1.60e-22!61;UBERON:0000033!5.22e-22!123;UBERON:0001049!3.50e-21!57;UBERON:0005068!3.50e-21!57;UBERON:0006241!3.50e-21!57;UBERON:0007135!3.50e-21!57;UBERON:0000153!8.64e-21!129;UBERON:0007811!8.64e-21!129;UBERON:0001896!3.58e-20!3;UBERON:0005290!3.58e-20!3;UBERON:0010096!3.58e-20!3;UBERON:0004121!5.17e-18!169;UBERON:0002616!1.48e-17!59;UBERON:0000924!1.71e-17!173;UBERON:0006601!1.71e-17!173;UBERON:0002780!9.16e-16!41;UBERON:0001890!9.16e-16!41;UBERON:0006240!9.16e-16!41;UBERON:0007023!9.27e-16!115;UBERON:0003080!2.37e-15!42;UBERON:0003296!2.72e-15!4;UBERON:0010133!2.72e-15!4;UBERON:0001905!4.85e-14!2;UBERON:0002757!4.85e-14!2;UBERON:0010134!4.85e-14!2;UBERON:0002784!4.85e-14!2;UBERON:0005408!4.85e-14!2;UBERON:0001899!4.85e-14!2;UBERON:0000020!6.17e-13!23;UBERON:0000966!1.87e-12!5;UBERON:0005388!1.87e-12!5;UBERON:0001802!1.87e-12!5;UBERON:0001032!2.32e-12!24;UBERON:0004456!2.32e-12!24;UBERON:0000970!3.41e-11!20;UBERON:0002104!1.24e-10!21;UBERON:0002791!2.76e-10!33;UBERON:0001893!5.85e-10!34;UBERON:0001894!6.03e-09!7;UBERON:0006222!6.03e-09!7;UBERON:0000019!2.52e-08!19;UBERON:0000047!2.52e-08!19;UBERON:0004088!2.52e-08!19;UBERON:0003072!2.52e-08!19;UBERON:0003071!2.52e-08!19;UBERON:0004128!2.52e-08!19;UBERON:0001869!3.93e-08!32;UBERON:0000956!7.14e-08!25;UBERON:0000203!7.14e-08!25;UBERON:0002298!7.17e-08!8;UBERON:0001154!9.44e-08!1;UBERON:0001153!9.44e-08!1;UBERON:0002336!1.01e-07!1;UBERON:0001018!1.01e-07!1;UBERON:0002473!1.01e-07!1;UBERON:0005340!1.01e-07!1;UBERON:0002316!1.01e-07!1;UBERON:0003544!1.01e-07!1;UBERON:0001020!1.01e-07!1;UBERON:0005970!1.01e-07!1;UBERON:0002437!1.01e-07!1;UBERON:0002020!1.27e-07!34;UBERON:0003528!1.27e-07!34;UBERON:0002902!1.39e-07!1;UBERON:0009899!1.39e-07!1;UBERON:0001456!1.65e-07!21;UBERON:0000475!2.42e-07!365;UBERON:0002581!2.80e-07!1;UBERON:0001882!2.98e-07!1;UBERON:0005403!2.98e-07!1;UBERON:0000063!3.35e-07!97;UBERON:0003076!4.27e-07!15;UBERON:0003057!4.27e-07!15;UBERON:0001950!5.07e-07!20|ontology_enrichment_uberon_v019=UBERON:0001896;1.03e-17;3!UBERON:0005290;1.03e-17;3!UBERON:0000966;2.66e-11;5!UBERON:0005388;2.66e-11;5!UBERON:0001802;2.66e-11;5!UBERON:0000970;5.16e-11;20!UBERON:0002104;1.53e-10;21!UBERON:0000020;1.02e-09;23!UBERON:0002298;1.50e-09;6!UBERON:0001032;2.35e-09;24!UBERON:0004456;2.35e-09;24|ontology_enrichment_uberon_v019_2=UBERON:0001896,9.46e-18,3;UBERON:0005290,9.46e-18,3;UBERON:0010096,9.46e-18,3;UBERON:0000970,1.53e-10,21;UBERON:0002104,1.53e-10,21;UBERON:0000966,1.22e-09,6;UBERON:0005388,1.22e-09,6;UBERON:0001802,1.22e-09,6;UBERON:0002298,1.44e-09,6;UBERON:0000020,2.35e-09,24;UBERON:0001032,2.35e-09,24;UBERON:0004456,2.35e-09,24|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.811512834825538,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269604531922708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.3951140759045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=27044 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30646 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-6bp_to_ENST00000492840_5end | |||
|coexpression_cluster_id=C41 | |||
|description=CAGE_peak_7_at_SND1_5end | |||
|id=chr7:127544658..127544672,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;6.76e-18;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!3.56e-30!86;UBERON:0003075!1.22e-27!86;UBERON:0007284!1.22e-27!86;UBERON:0000073!5.77e-27!94;UBERON:0001016!5.77e-27!94;UBERON:0002346!3.09e-26!90;UBERON:0001017!9.78e-26!82;UBERON:0000955!8.02e-25!69;UBERON:0006238!8.02e-25!69;UBERON:0003056!1.60e-22!61;UBERON:0000033!5.22e-22!123;UBERON:0001049!3.50e-21!57;UBERON:0005068!3.50e-21!57;UBERON:0006241!3.50e-21!57;UBERON:0007135!3.50e-21!57;UBERON:0000153!8.64e-21!129;UBERON:0007811!8.64e-21!129;UBERON:0001896!3.58e-20!3;UBERON:0005290!3.58e-20!3;UBERON:0010096!3.58e-20!3;UBERON:0004121!5.17e-18!169;UBERON:0002616!1.48e-17!59;UBERON:0000924!1.71e-17!173;UBERON:0006601!1.71e-17!173;UBERON:0002780!9.16e-16!41;UBERON:0001890!9.16e-16!41;UBERON:0006240!9.16e-16!41;UBERON:0007023!9.27e-16!115;UBERON:0003080!2.37e-15!42;UBERON:0003296!2.72e-15!4;UBERON:0010133!2.72e-15!4;UBERON:0001905!4.85e-14!2;UBERON:0002757!4.85e-14!2;UBERON:0010134!4.85e-14!2;UBERON:0002784!4.85e-14!2;UBERON:0005408!4.85e-14!2;UBERON:0001899!4.85e-14!2;UBERON:0000020!6.17e-13!23;UBERON:0000966!1.87e-12!5;UBERON:0005388!1.87e-12!5;UBERON:0001802!1.87e-12!5;UBERON:0001032!2.32e-12!24;UBERON:0004456!2.32e-12!24;UBERON:0000970!3.41e-11!20;UBERON:0002104!1.24e-10!21;UBERON:0002791!2.76e-10!33;UBERON:0001893!5.85e-10!34;UBERON:0001894!6.03e-09!7;UBERON:0006222!6.03e-09!7;UBERON:0000019!2.52e-08!19;UBERON:0000047!2.52e-08!19;UBERON:0004088!2.52e-08!19;UBERON:0003072!2.52e-08!19;UBERON:0003071!2.52e-08!19;UBERON:0004128!2.52e-08!19;UBERON:0001869!3.93e-08!32;UBERON:0000956!7.14e-08!25;UBERON:0000203!7.14e-08!25;UBERON:0002298!7.17e-08!8;UBERON:0001154!9.44e-08!1;UBERON:0001153!9.44e-08!1;UBERON:0002336!1.01e-07!1;UBERON:0001018!1.01e-07!1;UBERON:0002473!1.01e-07!1;UBERON:0005340!1.01e-07!1;UBERON:0002316!1.01e-07!1;UBERON:0003544!1.01e-07!1;UBERON:0001020!1.01e-07!1;UBERON:0005970!1.01e-07!1;UBERON:0002437!1.01e-07!1;UBERON:0002020!1.27e-07!34;UBERON:0003528!1.27e-07!34;UBERON:0002902!1.39e-07!1;UBERON:0009899!1.39e-07!1;UBERON:0001456!1.65e-07!21;UBERON:0000475!2.42e-07!365;UBERON:0002581!2.80e-07!1;UBERON:0001882!2.98e-07!1;UBERON:0005403!2.98e-07!1;UBERON:0000063!3.35e-07!97;UBERON:0003076!4.27e-07!15;UBERON:0003057!4.27e-07!15;UBERON:0001950!5.07e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0001896;1.03e-17;3!UBERON:0005290;1.03e-17;3!UBERON:0000966;2.66e-11;5!UBERON:0005388;2.66e-11;5!UBERON:0001802;2.66e-11;5!UBERON:0000970;5.16e-11;20!UBERON:0002104;1.53e-10;21!UBERON:0000020;1.02e-09;23!UBERON:0002298;1.50e-09;6!UBERON:0001032;2.35e-09;24!UBERON:0004456;2.35e-09;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001896,9.46e-18,3;UBERON:0005290,9.46e-18,3;UBERON:0010096,9.46e-18,3;UBERON:0000970,1.53e-10,21;UBERON:0002104,1.53e-10,21;UBERON:0000966,1.22e-09,6;UBERON:0005388,1.22e-09,6;UBERON:0001802,1.22e-09,6;UBERON:0002298,1.44e-09,6;UBERON:0000020,2.35e-09,24;UBERON:0001032,2.35e-09,24;UBERON:0004456,2.35e-09,24 | |||
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|short_description=p7@SND1 | |||
}} |
Revision as of 23:04, 13 September 2013
Short description: | p7@SND1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_SND1_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | -6bp_to_ENST00000492840_5end |
EntrezGene: | SND1 |
HGNC: | 30646 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
medulla oblongata | 9.46e-18 | 3 |
myelencephalon | 9.46e-18 | 3 |
future myelencephalon | 9.46e-18 | 3 |
eye | 1.53e-10 | 21 |
visual system | 1.53e-10 | 21 |
retina | 1.22e-09 | 6 |
photoreceptor array | 1.22e-09 | 6 |
posterior segment of eyeball | 1.22e-09 | 6 |
brainstem | 1.44e-09 | 6 |
sense organ | 2.35e-09 | 24 |
sensory system | 2.35e-09 | 24 |
entire sense organ system | 2.35e-09 | 24 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.