FFCP PHASE1:Hg19::chr12:31945225..31945237,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=440093 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=33164 | |||
|TSSclassifier=strong | |||
|UniProt=Q6NXT2 | |||
|association_with_transcript=-50bp_to_ENST00000340398,NM_001013699,uc001rkr.2_5end | |||
|coexpression_cluster_id=C290 | |||
|description=CAGE_peak_1_at_H3F3C_5end | |||
|id=chr12:31945225..31945237,- | |||
|ontology_enrichment_celltype=CL:0002057!1.37e-25!42;CL:0000860!9.02e-24!45;CL:0000738!4.32e-21!140;CL:0000766!7.59e-21!76;CL:0000037!3.54e-19!172;CL:0000566!3.54e-19!172;CL:0000988!3.68e-19!182;CL:0000557!3.28e-18!71;CL:0002032!2.31e-17!165;CL:0000837!2.31e-17!165;CL:0000763!2.47e-17!112;CL:0000049!2.47e-17!112;CL:0000839!5.80e-17!70;CL:0002031!1.96e-16!124;CL:0002009!7.40e-16!65;CL:0002194!8.68e-15!63;CL:0000576!8.68e-15!63;CL:0000040!8.68e-15!63;CL:0000559!8.68e-15!63;CL:0002087!4.13e-14!119;CL:0000219!7.46e-10!390;CL:0000134!1.21e-09!358;CL:0002320!2.36e-09!365;CL:0000003!6.09e-09!722;CL:0000034!8.96e-07!444 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.67e-23;33!CL:0002057;5.67e-23;33!CL:0000576;1.52e-16;48!CL:0000473;1.56e-14;39!CL:0000234;1.56e-14;39!CL:0000766;5.64e-13;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,9.99e-29,42;CL:0002057,9.99e-29,42;CL:0000766,2.98e-26,72;CL:0000738,1.48e-24,136;CL:0000557,3.91e-23,67;CL:0000473,1.83e-22,48;CL:0000234,1.83e-22,48;CL:0000988,1.01e-21,177;CL:0000839,1.31e-21,66;CL:0000037,1.86e-21,168;CL:0002009,2.26e-20,61;CL:0000763,4.01e-20,108;CL:0000049,4.01e-20,108;CL:0002031,1.61e-19,120;CL:0002032,2.12e-19,161;CL:0000837,2.12e-19,161;CL:0002194,4.34e-19,59;CL:0000576,4.34e-19,59;CL:0000040,4.34e-19,59;CL:0000559,4.34e-19,59;CL:0002087,8.48e-17,115;CL:0000134,4.38e-09,354;CL:0000219,6.20e-09,386;CL:0002320,1.15e-08,361 | |||
|ontology_enrichment_development_v019=CL:0002057;3.55e-21;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.11e-18!102;UBERON:0003061!4.11e-18!102;UBERON:0002371!2.26e-16!80;UBERON:0002193!6.30e-15!112;UBERON:0001474!1.00e-14!86;UBERON:0004765!2.70e-13!101;UBERON:0001434!2.70e-13!101;UBERON:0002384!2.90e-09!375;UBERON:0002405!1.51e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.35e-22,98;UBERON:0003061,3.35e-22,98;UBERON:0002371,1.01e-20,76;UBERON:0002193,7.06e-19,108;UBERON:0001474,1.32e-18,82;UBERON:0004765,4.35e-17,90;UBERON:0002405,4.81e-15,93;UBERON:0001434,4.88e-15,100;UBERON:0002384,1.78e-08,371 | |||
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| |||
|short_description=p1@H3F3C | |||
}} |
Revision as of 12:54, 11 January 2014
Short description: | p1@H3F3C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_H3F3C_5end |
Coexpression cluster: | C290_Eosinophils_CD14_Basophils_Mast_CD4_CD8_immature |
Association with transcript: | -50bp_to_ENST00000340398, NM_001013699, uc001rkr.2_5end |
EntrezGene: | H3F3C |
HGNC: | 33164 |
UniProt: | Q6NXT2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 9.99e-29 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.99e-29 | 42 |
myeloid leukocyte | 2.98e-26 | 72 |
leukocyte | 1.48e-24 | 136 |
granulocyte monocyte progenitor cell | 3.91e-23 | 67 |
defensive cell | 1.83e-22 | 48 |
phagocyte | 1.83e-22 | 48 |
hematopoietic cell | 1.01e-21 | 177 |
myeloid lineage restricted progenitor cell | 1.31e-21 | 66 |
hematopoietic stem cell | 1.86e-21 | 168 |
macrophage dendritic cell progenitor | 2.26e-20 | 61 |
myeloid cell | 4.01e-20 | 108 |
common myeloid progenitor | 4.01e-20 | 108 |
hematopoietic lineage restricted progenitor cell | 1.61e-19 | 120 |
hematopoietic oligopotent progenitor cell | 2.12e-19 | 161 |
hematopoietic multipotent progenitor cell | 2.12e-19 | 161 |
monopoietic cell | 4.34e-19 | 59 |
monocyte | 4.34e-19 | 59 |
monoblast | 4.34e-19 | 59 |
promonocyte | 4.34e-19 | 59 |
nongranular leukocyte | 8.48e-17 | 115 |
mesenchymal cell | 4.38e-09 | 354 |
motile cell | 6.20e-09 | 386 |
connective tissue cell | 1.15e-08 | 361 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.35e-22 | 98 |
blood island | 3.35e-22 | 98 |
bone marrow | 1.01e-20 | 76 |
hemolymphoid system | 7.06e-19 | 108 |
bone element | 1.32e-18 | 82 |
skeletal element | 4.35e-17 | 90 |
immune system | 4.81e-15 | 93 |
skeletal system | 4.88e-15 | 100 |
connective tissue | 1.78e-08 | 371 |