FFCP PHASE1:Hg19::chr13:76210760..76210803,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4008 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6646 | |||
|TSSclassifier=strong | |||
|UniProt=E9PMP7 | |||
|association_with_transcript=301bp_to_ENST00000377499,uc001vjt.1_5end | |||
|coexpression_cluster_id=C1189 | |||
|description=CAGE_peak_3_at_LMO7_5end | |||
|id=chr13:76210760..76210803,+ | |||
|ontology_enrichment_celltype=CL:0000055!7.36e-35!180;CL:0000057!3.26e-21!75;CL:0002620!3.26e-12!23;CL:0000680!8.50e-12!57;CL:0000056!8.50e-12!57;CL:0000355!8.50e-12!57;CL:0000192!2.51e-10!42;CL:0000514!2.51e-10!42;CL:0000187!3.01e-10!54;CL:0000048!3.26e-09!430;CL:0000183!4.42e-09!59;CL:0000359!7.04e-09!32;CL:0000723!1.22e-08!436;CL:0000393!1.81e-08!60;CL:0000211!1.81e-08!60;CL:0000034!8.61e-08!444 | |||
|ontology_enrichment_celltype_v019=CL:0002620;3.74e-15;23!CL:0000057;3.42e-10;73!CL:0002320;3.31e-09;188!CL:0000499;2.38e-08;28!CL:0002334;4.07e-08;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.26e-27,76;CL:0000048,7.82e-18,427;CL:0000723,4.40e-17,433;CL:0000034,1.31e-16,441;CL:0002620,5.77e-15,23;CL:0002320,9.12e-12,361;CL:0000134,1.26e-11,354;CL:0000219,5.97e-10,386;CL:0000499,2.23e-08,28;CL:0002334,3.71e-08,12;CL:0000680,2.61e-07,58;CL:0000056,2.61e-07,58;CL:0000355,2.61e-07,58;CL:0000192,3.17e-07,43;CL:0000514,3.17e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;7.98e-08;14!DOID:17;8.43e-07;5!DOID:450;8.43e-07;5!DOID:66;8.43e-07;5!DOID:423;8.43e-07;5!DOID:0080000;8.43e-07;5!DOID:11722;8.43e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,5.97e-08,14;DOID:17,7.93e-07,5;DOID:450,7.93e-07,5;DOID:66,7.93e-07,5;DOID:423,7.93e-07,5;DOID:0080000,7.93e-07,5;DOID:11722,7.93e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.08e-13!83;UBERON:0002329!1.08e-13!83;UBERON:0003077!1.08e-13!83;UBERON:0003059!1.08e-13!83;UBERON:0007282!1.08e-13!83;UBERON:0009618!1.08e-13!83;UBERON:0007285!1.08e-13!83;UBERON:0004290!4.88e-11!70;UBERON:0001134!7.84e-10!61;UBERON:0002036!7.84e-10!61;UBERON:0003082!7.84e-10!61;UBERON:0000486!1.50e-09!82;UBERON:0002385!5.66e-09!63;UBERON:0001015!5.66e-09!63;UBERON:0000383!5.66e-09!63;UBERON:0002199!4.18e-08!45;UBERON:0002416!4.18e-08!45;UBERON:0003102!6.26e-08!95;UBERON:0002097!1.28e-07!40;UBERON:0000475!1.56e-07!365;UBERON:0005256!3.56e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;1.36e-09;9!UBERON:0000042;1.36e-09;9!UBERON:0003688;2.72e-09;6!UBERON:0002358;2.72e-09;6!UBERON:0003684;2.72e-09;6!UBERON:0001178;2.72e-09;6!UBERON:0002097;3.60e-09;41!UBERON:0002384;5.86e-09;198!UBERON:0002199;2.12e-08;46!UBERON:0002416;2.12e-08;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.25e-12,371;UBERON:0002199,3.74e-12,46;UBERON:0002416,3.74e-12,46;UBERON:0002097,4.28e-12,41;UBERON:0003102,1.37e-11,99;UBERON:0003688,2.62e-09,6;UBERON:0002358,2.62e-09,6;UBERON:0003684,2.62e-09,6;UBERON:0001178,2.62e-09,6;UBERON:0007524,9.18e-07,73 | |||
|phase1_expression=17.4411244099734,7.27941781229343,10.7125347112938,22.0161256376887,6.70441641640932,4.36169262050184,7.59899634504932,0,0.261185628199839,0,0,0.218441372130172,0,0.866364470720326,0.662794751455832,2.01697543935533,0.602694528023977,0.730310090387373,0,0.123121058076788,0.612002073732759,0,0.572471974262113,0.273748850145768,0.251085279189606,0,0.0821005894499457,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485168122375632,0,0,0,0,0,0,0,0,0,0.376484679085209,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0.661044872784862,0,0,0,0,0,1.12101712596307,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0.301150238155546,0.255973222308837,0,0,0,0,0,0.289648807765598,0,1.34140171940727,0.895037932904712,8.31310050484502,8.02140657017423,7.67686550492366,3.9764297352555,1.94653948121054,0.0945348171640679,0.886917589850256,0.351339142772504,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0.33472061276467,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0,11.9273268406876,6.45815609489357,14.6974190702673,11.4734648299525,3.54668382198357,1.68203280042692,1.06748995729705,0.74000264525148,1.8672662123986,0.538842688278752,0.163461903113459,1.21085942115945,0,0.234321431833797,0,1.1409436430889,0.896692083310806,0.939475989150119,0.809364721840658,0.842704840213491,5.30800845262722,1.35117749042945,1.03325781175765,3.56400857184616,2.96720315134268,0,1.43723628363248,0.673344455816265,0.750711119231785,4.71008996323111,3.07284334616587,11.3400484445637,1.20190447125277,1.36118619792025,13.4542226766646,5.33893472046419,5.29829752898905,5.70173082560364,2.98852334791473,23.9605702242435,11.1670113798954,20.4219362011932,13.251432701923,9.59248342127635,10.4016385465798,10.9919318636792,19.1705179958972,14.7098063412355,5.76506013855658,0.193260853163297,0,0,0,0,0,0,0,0,1.56449532329816,5.78916844373597,0,5.57241513638375,3.60939740834793,0.473227200159376,0.337169380156203,0,0.330881918197182,0,0,0,0.196221465125346,0,0,1.40241773803446,0,0,0,0,0,0,0.368965315629341,0.514703430895577,0,0,0,0.0925884451585296,0,0,0,0,5.9878434060269,0.721832238805369,0,0.380508304469197,0,0,0,0,0,0,0.16798212819886,0.425325291727159,0.626909658919938,0,0,0,0.176096868026452,0,0,0,0.063497894292169,0,0,0,0.102827492703324,0,0.571652865261156,0.560655421726804,0.43596006883328,1.0267360014933,11.1173675551689,0,0.845302752556,9.0418959638856,5.2003718455683,0,1.41849132023278,0.266422179016099,0.285955987316295,0,0,0,0,0,0.904318131178758,6.10073421020206,0.299918973546171,0,0,0,12.2208676300707,6.89171615004683,1.42636905040718,14.4781306667579,5.75333703141074,5.90901178691655,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,1.2269149171914,0,2.71265023699736,4.78332981520856,8.3861624734666,2.99634588564476,9.48845461440977,14.1444666872028,2.27407504055985,2.0694614258501,4.64957918974806,4.60922921354258,7.21134000085088,0.195801157462741,0,0,0,0.106727557803444,0,0,0,32.5021228242598,65.9886485138668,13.1910244383545,16.273671955474,33.2609711893357,10.9380666377653,4.45254199334973,1.69630663182921,0.355123450626254,1.39616165223476,0,0.813472649219715,0,0.200506470303285,0,3.21480454860899,3.64182336013434,5.63834984325524,0.451199612907412,0.308061348417659,0,0,0,0,0,0.215915916102139,0,0.812839312631559,0,0.509752546090077,0,0,0,0,0,0,0,0,0.366277859273374,0.495056999523528,0,0,1.6068392984416,0.386682873168488,0.154048617114644,0.15350367472613,0,0.107420244868274,0.435050081742686,0.170453254832202,0.534192213880424,0,0,0,0,5.11330104227014,11.9628691795643,0,0.616067160352178,2.12922412126809,0,0.9266210955196,3.43499728180779,2.60510858551767,3.79655309662471,2.2875623270859,0.255897791311334,0.42793898803392,0.95460974377781,0.78494864019923,1.79872457583315,1.09814811894422,1.7671860351853,2.42618977887979,0,0.842516912477962,0.975267478179181,0.974853958525138,4.22600587027022,5.45999645631943,3.11091950298168,3.39024349860728,0.551365343546124,0.66343897524122,3.5076070820301,0,0,1.82619339266434,0.6196469961995,0.563391205064483,3.72869515730534,6.18968958382663,2.85336841185,1.41904425628239,3.58882980006029,4.93942339439853,0,0,0.48111056362756,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0.490080431962063,0.185803175125719,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0.343505344755765,1.84344458585075,0.671028323677248,0.166849141711909,0.390776190804081,0.556812347790485,0,0.270455678475983,0.33307196799782,0,0,0,0,0,0,0.47748896947538,0.890894042497916,0,0,0.140669416410513,0,0,0,0.796991953004279,0,0,0.20453736500431,0,13.6857418571195,0.0898683511473268,0,0,0.197286811273867,0,10.0023291130173,0,0,0,0,0,0,1.0241410345695,0.254253650292766,0,0,0,0,0,0.120596438625408,0,0,0,0,0.653630781113941,0,0.0769502585037971,0.113942055847001,0,0,0,0.31900115973192,1.83195186803725,0,1.02193298195737,0.941881538370149,0,0,0,0,0,0,0.632994193584081,0.816164040795739,0.1413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| |||
|short_description=p3@LMO7 | |||
}} |
Revision as of 18:04, 11 January 2014
Short description: | p3@LMO7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LMO7_5end |
Coexpression cluster: | C1189_Preadipocyte_Fibroblast_Ewing_mesodermal_Adipocyte_Smooth_osteoclastoma |
Association with transcript: | 301bp_to_ENST00000377499, uc001vjt.1_5end |
EntrezGene: | LMO7 |
HGNC: | 6646 |
UniProt: | E9PMP7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.26e-27 | 76 |
multi fate stem cell | 7.82e-18 | 427 |
somatic stem cell | 4.40e-17 | 433 |
stem cell | 1.31e-16 | 441 |
skin fibroblast | 5.77e-15 | 23 |
connective tissue cell | 9.12e-12 | 361 |
mesenchymal cell | 1.26e-11 | 354 |
motile cell | 5.97e-10 | 386 |
stromal cell | 2.23e-08 | 28 |
preadipocyte | 3.71e-08 | 12 |
muscle precursor cell | 2.61e-07 | 58 |
myoblast | 2.61e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.61e-07 | 58 |
smooth muscle cell | 3.17e-07 | 43 |
smooth muscle myoblast | 3.17e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 2.25e-12 | 371 |
integument | 3.74e-12 | 46 |
integumental system | 3.74e-12 | 46 |
skin of body | 4.28e-12 | 41 |
surface structure | 1.37e-11 | 99 |
omentum | 2.62e-09 | 6 |
peritoneum | 2.62e-09 | 6 |
abdominal cavity | 2.62e-09 | 6 |
visceral peritoneum | 2.62e-09 | 6 |
dense mesenchyme tissue | 9.18e-07 | 73 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 5.97e-08 | 14 |
musculoskeletal system disease | 7.93e-07 | 5 |
myotonic disease | 7.93e-07 | 5 |
muscle tissue disease | 7.93e-07 | 5 |
myopathy | 7.93e-07 | 5 |
muscular disease | 7.93e-07 | 5 |
myotonic dystrophy | 7.93e-07 | 5 |