FFCP PHASE1:Hg19::chr17:8027418..8027432,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84667 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15977 | |||
|TSSclassifier=strong | |||
|UniProt=Q9BYE0,F8VPC9 | |||
|association_with_transcript=-8bp_to_ENST00000317814,ENST00000541682,NM_001165967,NM_032580_5end | |||
|description=CAGE_peak_1_at_HES7_5end | |||
|id=chr17:8027418..8027432,- | |||
|ontology_enrichment_celltype=CL:0000066!1.83e-27!254;CL:0002321!6.98e-12!248;CL:0000220!1.35e-11!246;CL:0000076!3.60e-11!62;CL:0002076!4.68e-10!43;CL:0002368!8.28e-09!13;CL:0000223!9.68e-09!59;CL:0002202!2.93e-07!9;CL:0002632!2.93e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002368;8.54e-14;13!CL:0002202;1.14e-12;9!CL:0002632;1.14e-12;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.33e-21,253;CL:0002368,8.43e-14,13;CL:0002202,1.27e-12,9;CL:0002632,1.27e-12,9;CL:0000076,1.96e-12,63;CL:0002076,4.56e-09,42;CL:0000223,3.68e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!9.32e-14!143;DOID:305!2.51e-12!106;DOID:162!1.41e-08!235;DOID:14566!4.28e-08!239 | |||
|ontology_enrichment_disease_v019=DOID:1749;5.33e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,6.71e-10,106;DOID:1749,6.94e-09,14;DOID:0050687,1.62e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0003104!1.10e-11!238;UBERON:0009142!1.10e-11!238;UBERON:0004119!1.98e-11!169;UBERON:0000925!1.98e-11!169;UBERON:0006595!1.98e-11!169;UBERON:0001007!8.55e-10!155;UBERON:0001555!8.55e-10!155;UBERON:0007026!8.55e-10!155;UBERON:0001004!1.42e-09!72;UBERON:0000077!2.73e-09!130;UBERON:0008947!3.04e-09!38;UBERON:0003258!3.04e-09!38;UBERON:0000481!6.23e-09!347;UBERON:0000487!1.42e-08!22;UBERON:0000065!1.80e-08!53;UBERON:0001041!5.77e-08!98;UBERON:0000072!6.59e-08!46;UBERON:0006914!1.58e-07!25;UBERON:0005157!3.16e-07!51;UBERON:0004921!4.42e-07!129;UBERON:0004185!4.42e-07!129;UBERON:0005177!5.27e-07!107;UBERON:0000119!7.26e-07!312;UBERON:0000483!8.45e-07!309;UBERON:0005153!9.88e-07!37;UBERON:0000490!9.99e-07!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0000490;7.45e-11;33!UBERON:0000072;2.37e-10;37!UBERON:0000065;1.60e-09;44!UBERON:0000487;2.19e-09;22!UBERON:0001737;2.68e-09;9!UBERON:0001557;2.68e-09;9!UBERON:0007196;3.58e-08;15!UBERON:0001558;3.58e-08;15!UBERON:0006914;7.76e-08;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0008947,1.08e-10,38;UBERON:0003258,1.08e-10,38;UBERON:0000065,4.40e-10,54;UBERON:0000487,1.61e-09,22;UBERON:0000072,1.61e-09,47;UBERON:0001737,1.64e-09,9;UBERON:0001004,2.60e-09,74;UBERON:0004119,3.51e-08,160;UBERON:0000925,3.51e-08,160;UBERON:0006595,3.51e-08,160;UBERON:0007196,4.80e-08,15;UBERON:0001558,4.80e-08,15;UBERON:0006914,5.99e-08,25;UBERON:0001007,1.65e-07,145;UBERON:0001555,1.65e-07,145;UBERON:0007026,1.65e-07,145 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,2.7030733015166,3.48900583986214,0,0,0.123766352960047,0,0,0,0,0,0.369363174230364,0.204000691244253,0,0,0.136874425072884,0.251085279189606,0.0764134057479513,0,0.0787107813136792,0,0,0,9.19421224478927,3.0120591877825,11.4623743151704,0,0.426507697462265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0,0.221729397462564,0.087834785693126,0.130979075497713,9.4716774956061,5.93255108455087,0,0,0,0,0,0,1.78886166630035,4.30117297553062,2.42998351125316,0,7.1314904155684,0.825354125820202,2.92592953151535,0,0,0,0.402829317109147,4.56163263431108,0.488124115096339,1.47065232138347,0.81014194788176,0.17859945656816,0,0.225222960966644,3.06633274931766,5.69559395740877,3.48083313467774,0,0,6.54141078213801,0,0.12663051166458,0,0,0,0,0,0,0.933633106199299,1.0776853765575,0.326923806226917,0,1.72852777344,2.34321431833797,0.624320153660641,1.71141546463335,1.79338416662161,2.58355897016283,0.971237666208789,1.12360645361799,0.816616685019573,1.22834317311768,3.51307655997603,0,0.247266929278557,0.910161361938026,0,1.5150250255866,1.62654075833553,0.831192346452549,0,0,0.150238058906597,0.680593098960126,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0.201504196455281,0.169560592310488,0.193260853163297,0.545492241181669,0,0.365921118388786,0.265059536642971,0.929551542956147,0.621966330092223,0.252320850875628,0,0,0,0,0,0,2.72105640091641,1.85443159085912,2.6511213287183,2.53676137284506,0.871517776369625,2.60997681022206,4.71909578560575,3.53198637225623,4.61696588335668,0,1.40241773803446,0,1.47008711385542,0,0,0,0,0.614942192715568,0.343135620597051,1.64625428112938,1.1240175325762,0.301586917234893,5.83307204498736,4.88712457965487,0,0,0.115930404975077,0,0.721832238805369,0,0.190254152234598,0,0,0,0,0,0,0.16798212819886,0.708875486211932,4.11969204433102,9.00965209393282,1.15014803749563,0,0,0,0,0,1.20645999155121,13.3695948945397,0,8.55362230113526,1.54241239054985,10.5120070245371,0.571652865261156,0.224262168690721,0,0.36669142910475,0,0,0.845302752556,0,0,0,5.67396528093113,0.799266537048298,1.14382394926518,0,0.823240336780769,0.325736184293735,0.710783897485092,7.91951872933429,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0.358121926479791,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0.36807447515742,0.500170521059677,0,0.207970861530807,0,0,0.117141414992713,0,0,0,0,0,0.0868836144680828,0.783204629850962,0.686286847621712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0.246381468041427,0,0,0.846016147141356,1.20303882181971,14.5487962518716,0.114814448164607,0.182091168006717,0,0,0.0770153371044148,2.35304930753057,0,0.105551628892876,0,0.340187410553031,0,0,0.270946437543853,0,0.509752546090077,0,0.223874754722178,0,0,0.256450125116389,0,0,0.206082023295445,0,0,2.87132768998086,3.90036147621913,1.6068392984416,0.96670718292122,0.308097234229289,0.307007349452259,1.51620229732984,0.644521469209642,0.580066775656914,0.93749290157711,0,0.661139661443912,1.34533047155574,1.53135254993501,1.4162089319777,0,0,0,0.616067160352178,1.06461206063404,0,0.37064843820784,0.143124886741991,0.372158369359667,0.316379424718726,0,1.02359116524534,0,0,0.78494864019923,0.179872457583315,0,0.235624804691373,0,0,0,0.48763373908959,1.21856744815642,1.05650146756755,0,0,0,0,0.66343897524122,0,0,0,1.82619339266434,3.40805847909725,1.97186921772569,1.43411352204052,0.785992328104969,0.7133421029625,0,0,0,3.03578539012572,0.699869440489966,8.27510169439404,4.69211592875051,8.71127878890581,0.188287601553558,0.86101074534246,0,0.886860307073351,0.689170200620878,0,0,0,0,0,0,0,0,9.29369418809016,0.962479855263359,5.63592496756373,0.185803175125719,1.44269212976445,0,1.11598390910176,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,24.6361859151512,0.334330152832435,1.42068073403207,0.47748896947538,0.296964680832639,0.307160702099232,0,0,0.333926115068718,24.7205811340139,0.211125408127993,0.398495976502139,0,0,0.715880777515084,0.123084805461069,0.622079175323615,0,0.179021174675609,0,0.197286811273867,0,0,0,0,1.99613798001194,0,0.174919999992391,0,1.4793148277115,1.27126825146383,0.709163045303809,1.37897349296586,3.2076507472158,2.43074992906609,0,0.120596438625408,0,0,0.295547618953547,0,2.1787692703798,0,0.230850775511391,0.341826167541004,0.23056390438806,0.359030577639089,0.760531603454056,1.27600463892768,0.366390373607449,0.533034776018635,0,0,0,0.225595660617181,0.392125068635479,0.167821586975843,0,0,0.421996129056054,0,0.141353071433941,4.11138415509973,0,0,0,20.4599578789629,26.4426829345516,20.3622801535638,0.067401132980677,0,0,0,0.391329237864179,0.242780379534093,0,0,0,0.442306057399416,19.0910742656406,0.103688191397247,2.65861549082874,4.63388738225698,1.56966459203613,1.19472429772959,0.569219092059585,11.2326485140642,0.173559738335131,1.17590876897253,12.6235849541584,0,0.6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| |||
|short_description=p1@HES7 | |||
}} |
Revision as of 13:45, 20 January 2014
Short description: | p1@HES7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HES7_5end |
Coexpression cluster: | NA |
Association with transcript: | -8bp_to_ENST00000317814, ENST00000541682, NM_001165967, NM_032580_5end |
EntrezGene: | HES7 |
HGNC: | 15977 |
UniProt: | Q9BYE0F8VPC9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.33e-21 | 253 |
respiratory epithelial cell | 8.43e-14 | 13 |
epithelial cell of tracheobronchial tree | 1.27e-12 | 9 |
epithelial cell of lower respiratory tract | 1.27e-12 | 9 |
squamous epithelial cell | 1.96e-12 | 63 |
endo-epithelial cell | 4.56e-09 | 42 |
endodermal cell | 3.68e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
respiratory primordium | 1.08e-10 | 38 |
endoderm of foregut | 1.08e-10 | 38 |
respiratory tract | 4.40e-10 | 54 |
simple squamous epithelium | 1.61e-09 | 22 |
segment of respiratory tract | 1.61e-09 | 47 |
larynx | 1.64e-09 | 9 |
respiratory system | 2.60e-09 | 74 |
endoderm-derived structure | 3.51e-08 | 160 |
endoderm | 3.51e-08 | 160 |
presumptive endoderm | 3.51e-08 | 160 |
tracheobronchial tree | 4.80e-08 | 15 |
lower respiratory tract | 4.80e-08 | 15 |
squamous epithelium | 5.99e-08 | 25 |
digestive system | 1.65e-07 | 145 |
digestive tract | 1.65e-07 | 145 |
primitive gut | 1.65e-07 | 145 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 6.71e-10 | 106 |
squamous cell carcinoma | 6.94e-09 | 14 |
cell type cancer | 1.62e-07 | 143 |