FFCP PHASE1:Hg19::chr19:39898968..39898980,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C250 | |||
|description=CAGE_peak_at_chr19:39898968..39898980,+ | |||
|id=chr19:39898968..39898980,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.28e-23!42;CL:0000860!1.84e-20!45;CL:0000738!3.67e-19!140;CL:0000766!4.10e-19!76;CL:0000557!2.55e-15!71;CL:0002009!8.07e-15!65;CL:0002194!9.69e-14!63;CL:0000576!9.69e-14!63;CL:0000040!9.69e-14!63;CL:0000559!9.69e-14!63;CL:0000839!1.04e-13!70;CL:0002087!9.41e-13!119;CL:0002031!1.46e-12!124;CL:0000037!3.10e-10!172;CL:0000566!3.10e-10!172;CL:0002032!2.72e-09!165;CL:0000837!2.72e-09!165;CL:0000763!2.99e-09!112;CL:0000049!2.99e-09!112;CL:0000988!3.09e-09!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.35e-33;33!CL:0002057;5.35e-33;33!CL:0000576;2.03e-23;48!CL:0000473;1.82e-22;39!CL:0000234;1.82e-22;39!CL:0000766;1.47e-19;69!CL:0000094;1.11e-11;8!CL:0002087;4.83e-10;104!CL:0002393;6.68e-09;6!CL:0002397;6.68e-09;6!CL:0000763;2.14e-08;100!CL:0000738;3.52e-08;136!CL:0000081;5.39e-08;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.78e-45,42;CL:0002057,2.78e-45,42;CL:0000766,2.06e-41,72;CL:0000473,6.57e-38,48;CL:0000234,6.57e-38,48;CL:0000738,4.26e-35,136;CL:0000557,1.11e-33,67;CL:0002009,7.72e-32,61;CL:0000839,1.22e-30,66;CL:0002194,1.77e-29,59;CL:0000576,1.77e-29,59;CL:0000040,1.77e-29,59;CL:0000559,1.77e-29,59;CL:0000763,7.92e-26,108;CL:0000049,7.92e-26,108;CL:0002031,1.79e-25,120;CL:0002087,1.87e-24,115;CL:0000037,2.44e-24,168;CL:0002032,6.18e-23,161;CL:0000837,6.18e-23,161;CL:0000988,4.77e-22,177;CL:0000094,8.80e-12,8;CL:0002393,1.38e-09,9;CL:0002397,1.38e-09,9;CL:0002320,4.21e-09,361;CL:0000134,7.48e-09,354;CL:0000081,4.60e-08,11 | |||
|ontology_enrichment_development_v019=CL:0002057;2.53e-32;42!CL:0000049;2.75e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.27e-16!102;UBERON:0003061!1.27e-16!102;UBERON:0002193!6.50e-15!112;UBERON:0002371!2.66e-12!80;UBERON:0007023!2.75e-11!115;UBERON:0001474!6.03e-11!86;UBERON:0004765!3.05e-10!101;UBERON:0001434!3.05e-10!101;UBERON:0002405!3.50e-10!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.58e-29,98;UBERON:0003061,1.58e-29,98;UBERON:0002371,2.22e-29,76;UBERON:0001474,2.30e-27,82;UBERON:0002193,2.07e-26,108;UBERON:0004765,5.39e-26,90;UBERON:0001434,2.76e-24,100;UBERON:0002405,1.39e-23,93;UBERON:0002204,1.54e-12,167;UBERON:0003081,6.15e-11,203;UBERON:0002384,8.67e-09,371;UBERON:0000926,2.62e-07,315;UBERON:0004120,2.62e-07,315;UBERON:0006603,2.62e-07,315 | |||
|phase1_expression=0.908391896352783,0.642301571672949,0.422863212287913,0,0.446961094427288,0,0,1.26343974685366,0.261185628199839,0,0,0,0,1.11389717664042,1.98838425436749,0,0.602694528023977,0,0,0,0,0.313454721478088,0,0,0,0.305653622991805,0,0.157421562627358,1.57345710739562,2.30297638858328,4.64448369948228,0,0,0.739508020333575,0,0,0,2.21598163412751,7.2196001089251,8.89744569934992,0.447830948479849,0.32389366601898,0.257575567634187,2.18097358169347,2.26725566213286,0.242584061187816,3.71886459049095,1.6446715520873,4.95530193432166,8.05538698502021,2.81776777182011,3.54723344832878,7.92915065694223,9.03678557017357,16.251178391321,5.27078550719293,3.82068610080984,3.37085226667627,18.3650335422542,12.5162320559677,15.344091019177,3.62836430205388,3.59034583718937,7.2458207590558,3.77272010217159,0,1.86846674698672,3.26623264833766,3.12889751052121,5.2125322729228,4.23779651843358,1.84138817993782,2.53169909952708,2.5350634357433,5.74031609905618,1.88692780957538,1.79725809834392,2.70318407114711,1.44653028027372,0.855038231223746,3.18266683518544,1.64397738388171,0,0,0.889509253863555,0.426730222566507,0.400395987036012,0,0,0,4.55370375287559,7.6340834618222,4.58727873750275,2.64342657158052,2.24203425192614,0.263384084775077,0.786839080455332,5.89516144123747,5.34563897398724,0.668745981562712,0,2.36723902867367,0,0.334231370655521,1.17842362989935,1.32920336750173,1.35401931882508,0.896639238079726,0.390178042679635,0,0,0.289803085735052,1.33457906845854,0,0,0.226618685395132,0.766440987203842,0.68725489096526,0.506039384039006,0,0,0,0.752875595388864,0.127986611154418,0,0,0,3.62892137804518,9.09296665663925,2.17236605824198,2.43806866313962,0,0.12786256184353,0.361439152384566,0.50133791063589,0.579386075843295,0,0.486634870302636,0.0945348171640679,0,0.087834785693126,0.851363990735132,0,1.11235332835329,0,0,0.132957960518865,4.05434061319081,0.571994910780128,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,3.9534125230819,3.87780264148325,0.436094052142534,0.496971951695318,0.25326102332916,0.132409180813219,0.286836620748814,0.354668382198357,0,0,0.49333509683432,0,0.134710672069688,0,0.151357427644931,0,0,0.936480230490962,0,0.298897361103602,0,0,0,0,0,0.103325781175765,0,0.989067717114227,0,0,0,0,0.554128230968366,0.438977620880838,0.30648779579902,0,0,0,0,0,0.300091096084402,0.103052529238439,0.515281080091258,0,0,0,0.252433774244115,0,0,0.355009592516614,0,0,0.193260853163297,0,0,0,0,0.116193942869518,0.310983165046111,0,0,0,0,0,2.3218396401599,0,0,0,0,0.220587945464788,0,0,0,0,0,0,0,0,0,0,1.96565443335525,1.77236972004421,0,0.122988438543114,0,0.878002283269004,0,0,0.185176890317059,0,0,0,0.115930404975077,0,0,0.462985512576611,0.380508304469197,0,0,0.246217006087397,0.234004265139238,0,0,0,0,0.0895585227028483,0.290633938513962,0,0,0.088048434013226,52.0393570007338,39.6329871896644,35.8528510930919,0,0,0,0,0,0.600686115687835,0,0.112131084345361,0,0,0,3.57656445851882,0,0.531876233169741,0,0,0,0,0.857867961948885,0.542621605391443,0,0,0,0,0,0,0,0,0.502257091432126,0,0.479249710983165,0,0,0,0.410952645100767,0.179060963239896,0.112085143993527,5.71389204585589,7.97822026980214,5.77543663258868,0,0,0,0,0,6.74106321552464,11.966458368161,8.28831026872071,0.736148950314839,0.500170521059677,0.271265023699736,0,0.178428988797162,0.157702415033935,0.117141414992713,0,4.5481500811197,1.03473071292505,0,0,0.521301686808497,0.783204629850962,0,2.68798433959754,9.92285323765637,8.00456683525833,0.606255142892519,0,0.30239029332968,0.248107807818777,0.153461973288062,0.280660094433074,0,0,0.482561763430822,0,0.308419387605311,0.177561725313127,0.492762936082855,0,0.232420756919918,0.846016147141356,0,2.3941057123333,0.114814448164607,0.182091168006717,0.262248829918848,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.16386124460217,0,0,0.574265537996172,0.650060246036521,0,0.193341436584244,0,0.15350367472613,0,0.214840489736547,0.145016693914229,0,0.356128142586949,0.165284915360978,0,0.382838137483752,0.50578890427775,0.464845549297286,0,0,0.616067160352178,0,0,0,0,0,0.316379424718726,0,0.255897791311334,0,0.318203247925937,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0.141405431953713,0,0,0,0,0.578775534266688,1.9676842561399,0,0,0,0.286822704408103,0,0,0,6.96655196482292,1.31717957183961,0,0.349934720244983,0.0962221127255121,0,0,2.44773882019626,0,0,0.886860307073351,0,0.507447609232169,0,2.27858874869665,0.476463550915578,1.23408681925858,0.648473311192717,0.540031437238115,1.58625035258854,0,0.962479855263359,0.245040215981032,0.185803175125719,0,0,0.159426272728822,0,0,0.211673582723883,0.324621940274555,0,0.228234679033192,0,0,0,0.1605880751037,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0.18714054040822,6.59286806723523,0,0.111443384277478,0,0.23874448473769,0,1.22864280839693,1.9882952955326,0.140669416410513,0.111308705022906,0,0,1.79323189425963,3.03912307084262,0.251932747854276,0,0.123084805461069,0.311039587661807,0,0,0,3.05794557474494,4.7896618469388,0,0.9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| |||
|short_description=p@chr19:39898968..39898980,+ | |||
}} |
Revision as of 23:14, 20 January 2014
Short description: | p@chr19:39898968..39898980, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:39898968..39898980, + |
Coexpression cluster: | C250_Mast_Neutrophils_CD14_Eosinophils_CD8_Peripheral_CD4 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.78e-45 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.78e-45 | 42 |
myeloid leukocyte | 2.06e-41 | 72 |
defensive cell | 6.57e-38 | 48 |
phagocyte | 6.57e-38 | 48 |
leukocyte | 4.26e-35 | 136 |
granulocyte monocyte progenitor cell | 1.11e-33 | 67 |
macrophage dendritic cell progenitor | 7.72e-32 | 61 |
myeloid lineage restricted progenitor cell | 1.22e-30 | 66 |
monopoietic cell | 1.77e-29 | 59 |
monocyte | 1.77e-29 | 59 |
monoblast | 1.77e-29 | 59 |
promonocyte | 1.77e-29 | 59 |
myeloid cell | 7.92e-26 | 108 |
common myeloid progenitor | 7.92e-26 | 108 |
hematopoietic lineage restricted progenitor cell | 1.79e-25 | 120 |
nongranular leukocyte | 1.87e-24 | 115 |
hematopoietic stem cell | 2.44e-24 | 168 |
hematopoietic oligopotent progenitor cell | 6.18e-23 | 161 |
hematopoietic multipotent progenitor cell | 6.18e-23 | 161 |
hematopoietic cell | 4.77e-22 | 177 |
granulocyte | 8.80e-12 | 8 |
intermediate monocyte | 1.38e-09 | 9 |
CD14-positive, CD16-positive monocyte | 1.38e-09 | 9 |
connective tissue cell | 4.21e-09 | 361 |
mesenchymal cell | 7.48e-09 | 354 |
blood cell | 4.60e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.58e-29 | 98 |
blood island | 1.58e-29 | 98 |
bone marrow | 2.22e-29 | 76 |
bone element | 2.30e-27 | 82 |
hemolymphoid system | 2.07e-26 | 108 |
skeletal element | 5.39e-26 | 90 |
skeletal system | 2.76e-24 | 100 |
immune system | 1.39e-23 | 93 |
musculoskeletal system | 1.54e-12 | 167 |
lateral plate mesoderm | 6.15e-11 | 203 |
connective tissue | 8.67e-09 | 371 |
mesoderm | 2.62e-07 | 315 |
mesoderm-derived structure | 2.62e-07 | 315 |
presumptive mesoderm | 2.62e-07 | 315 |