FFCP PHASE1:Hg19::chr1:15573712..15573753,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=114827 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29408 | |||
|TSSclassifier=strong | |||
|UniProt=B1AJZ9,E9PQ17,B1AJZ8 | |||
|association_with_transcript=-14bp_to_ENST00000358897,ENST00000375999,ENST00000417793,ENST00000436024,NM_052929,uc001awa.1,uc001awb.2_5end | |||
|description=CAGE_peak_1_at_FHAD1_5end | |||
|id=chr1:15573712..15573753,+ | |||
|ontology_enrichment_celltype=CL:0002057!3.00e-17!42;CL:0000860!2.77e-16!45;CL:0002009!8.08e-13!65;CL:0002194!1.34e-12!63;CL:0000576!1.34e-12!63;CL:0000040!1.34e-12!63;CL:0000559!1.34e-12!63;CL:0000557!1.01e-10!71;CL:0000839!3.53e-10!70;CL:0000766!4.37e-09!76 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.47e-25;33!CL:0002057;7.47e-25;33!CL:0000473;1.64e-17;39!CL:0000234;1.64e-17;39!CL:0000576;5.39e-13;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.14e-19,42;CL:0002057,1.14e-19,42;CL:0000473,5.02e-19,48;CL:0000234,5.02e-19,48;CL:0002194,2.15e-14,59;CL:0000576,2.15e-14,59;CL:0000040,2.15e-14,59;CL:0000559,2.15e-14,59;CL:0002009,8.48e-14,61;CL:0000839,1.82e-12,66;CL:0000557,3.18e-12,67;CL:0000766,4.09e-11,72 | |||
|ontology_enrichment_development_v019=CL:0002057;7.91e-14;42 | |||
|ontology_enrichment_disease=DOID:305!5.47e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000062!4.04e-13!511;UBERON:0000922!8.23e-11!612;UBERON:0007023!1.17e-10!115;UBERON:0001049!4.39e-10!57;UBERON:0005068!4.39e-10!57;UBERON:0006241!4.39e-10!57;UBERON:0007135!4.39e-10!57;UBERON:0005743!7.68e-10!86;UBERON:0001017!1.28e-09!82;UBERON:0002050!8.30e-09!605;UBERON:0005423!8.30e-09!605;UBERON:0002616!1.63e-08!59;UBERON:0000923!1.99e-08!604;UBERON:0005291!1.99e-08!604;UBERON:0006598!1.99e-08!604;UBERON:0002532!1.99e-08!604;UBERON:0002371!3.00e-08!80;UBERON:0000073!3.01e-08!94;UBERON:0001016!3.01e-08!94;UBERON:0000468!3.64e-08!659;UBERON:0003075!3.85e-08!86;UBERON:0007284!3.85e-08!86;UBERON:0000955!5.20e-08!69;UBERON:0006238!5.20e-08!69;UBERON:0003080!5.70e-08!42;UBERON:0002298!7.22e-08!8;UBERON:0002780!2.02e-07!41;UBERON:0001890!2.02e-07!41;UBERON:0006240!2.02e-07!41;UBERON:0002346!2.72e-07!90;UBERON:0001474!6.05e-07!86;UBERON:0001894!6.94e-07!7;UBERON:0006222!6.94e-07!7;UBERON:0000467!9.33e-07!625 | |||
|ontology_enrichment_uberon_v019=UBERON:0001896;3.05e-12;3!UBERON:0005290;3.05e-12;3!UBERON:0002298;2.48e-10;6!UBERON:0000007;3.77e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001896,2.89e-12,3;UBERON:0005290,2.89e-12,3;UBERON:0010096,2.89e-12,3;UBERON:0002298,2.18e-10,6;UBERON:0002371,2.48e-10,76;UBERON:0001474,2.64e-09,82;UBERON:0004765,3.75e-08,90;UBERON:0000007,5.87e-08,2;UBERON:0002405,9.00e-08,93;UBERON:0002390,3.42e-07,98;UBERON:0003061,3.42e-07,98;UBERON:0001434,5.60e-07,100 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0.286235987131057,0,0.251085279189606,0.305653622991805,0.0821005894499457,0.0787107813136792,0,0,0.154816123316076,0,0.30120591877825,0,0,0,0,0,0,0.434021741431704,0,0.647787332037959,0.257575567634187,1.01778767145695,1.88937971844405,1.21292030593908,0.464858073811369,0.411167888021826,0.929119112685311,4.02769349251011,11.7833925003386,3.78371567821736,0.344745680736619,0.645484683583826,0,0,3.0019676506363,0.674170453335254,1.22433556948361,1.60464513538047,0,6.59702600373432,12.3667467725412,7.2458207590558,0,1.13477044938228,0,3.26623264833766,10.9511412868242,3.69221035998698,0,0.368277635987565,0.316462387440884,0.633765858935825,0,0.628975936525128,0.44931452458598,0.150176892841506,0,0.285012743741249,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,6.87640146362991,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.609868530647977,1.19276791489337,0.232387885739037,0.207322110030741,0.252320850875628,0,0,0,0,0,0,0,0.168584690078102,0,0,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0.790204397959275,0,0.738651018262192,0,0.594524649154913,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20575750823834,0,0.099972991182057,0,1.50677127429638,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0.0920809889358963,0,0,0,0.451199612907412,0.231046011313244,0,0,0.105551628892876,0,0,0,0,0.270946437543853,0,0.254876273045038,0,0.223874754722178,0,0,0.256450125116389,0,0,0.721287081534056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.422008249231538,0,0,10.7673958145277,0.996239941255349,0.552567831062295,0.755798243562828,0,0,0,0.449341755736634,0,0,0.197286811273867,0,0,0,0.0927680981618513,0,0,0,0.724999575434793,0.1137934482855,0.762760950878299,0.236387681767936,0.689486746482929,0,0,2.65722415744152,0.723578631752448,0,0,0,0.658156191461918,0.10893846351899,0.139423744278603,0.0769502585037971,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.40728582029699,0.141353071433941,0,0,0.0884575645033392,0.611030144933625,0,0,0,1.55022605855557,0,0.937057782901357,0,0,0,0.394584402849391,0,0.30607276163049,0.189559738885464,0,0.103688191397247,0,0,0.313932918407225,0,0.569219092059585,0,0.173559738335131,1.27390116638691,0.261177619741208,1.39781334593624,0,0.0967563312890851,0,0,0,0,0,0,0,0.0633107959558787,4.30213042016567,0.160317640503067,0,0.39961921916426,2.4495370916198,0.229073192331831,3.43189995723929,0,0,2.59263438078475,0.407712618220842,0,0,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0.196854963029498,0,0,0.681017030557878,0.482259445395058,1.10031549277787,0.83088067605837,0,0.77380195455795,0.0607495566580247,0,0.394028536495991,1.04909176269996,0,0.179287339332845,0,0,0,0,0,0,0,1.19730191562487,0.082092520749339,0,0.113312091520126,0,0,1.29282956361551,0.52893040697076,0,1.40963004463334,0.747511887973863,3.61569901729232,1.24271716604159,0,0,0,0,0,0,0,0,0.942324577501406,0,0,0,10.3213655224213,2.99508439149501,1.24192805882767,0.138348634936231,0,0.454947352624943,0.285465333544967,0,0,0,0,0,0,0,0,0,0.228840068396924,0,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0.643324774124777,0,0,0,0,0,0,0.657852148736121,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0,0,0,0.0691572524642179,0,0,0.0981477185010256,0.11796972334774,0,0.462102664601353,0,0,0,0.82731361184183,0,0,0,0,0.887136517302272,0.135075169236789,0,0.206686796501184,0.0634158101939068,1.64092442705466,0,0,0,0,0.535701835878287,0.336283722218824,1.21393120847326,1.13831095675649,0.0887023701626388,0.230467975111559,0,0.203909198930495,0.0657727735628491,0.236387681767936,0,0.235479278551542,0,0,0.913158720509496,0,0,0.214429632529969,0,2.20858708199438,0,0,0,0,0,0,0,0,0.846774100381858,1.8328549483524,0,0,3.80308468112494,0.098150233615243,0.243835849964539,0,0.102662806856247,0,0,0.701818390386317,0.397901550322736,0.594600453887843,0,0,1.20770274853339,0,0.218559560503957,5.17349025997675,0,0,0,0,1.2679671827502,0,0,0.193373663920732,0,0.357107877211315,0,0.481448200135009,0.730336388246517,0.458729283404541,0.143339583151451,0.315543124386369,0.0679914901909147,0.872701380680755,0.5290268405154,0,0,0,0,0.218531143927391,0.760191006068622,0,0,0,0,9.39655857906169,17.1497043299954,0.829169439458779,0.20686599172379,0.639701945702943,1.42838658878244,0.0645889098360061,0.186224142887574,0.112131862580613,0.0636471582781649,0.808468755832877,0,0,0.0673520530145875,2.65372159952903,0.665320713092027,0.814032686109745,0.106727345877715,0,0.0898252021065869,0,0.244482888365733,1.22068853494722,0,0.201273793591026,0 | |||
|short_description=p1@FHAD1 | |||
}} |
Revision as of 16:30, 10 January 2014
Short description: | p1@FHAD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_FHAD1_5end |
Coexpression cluster: | NA |
Association with transcript: | -14bp_to_ENST00000358897, ENST00000375999, ENST00000417793, ENST00000436024, NM_052929, uc001awa.1, uc001awb.2_5end |
EntrezGene: | FHAD1 |
HGNC: | 29408 |
UniProt: | B1AJZ9E9PQ17B1AJZ8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.14e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.14e-19 | 42 |
defensive cell | 5.02e-19 | 48 |
phagocyte | 5.02e-19 | 48 |
monopoietic cell | 2.15e-14 | 59 |
monocyte | 2.15e-14 | 59 |
monoblast | 2.15e-14 | 59 |
promonocyte | 2.15e-14 | 59 |
macrophage dendritic cell progenitor | 8.48e-14 | 61 |
myeloid lineage restricted progenitor cell | 1.82e-12 | 66 |
granulocyte monocyte progenitor cell | 3.18e-12 | 67 |
myeloid leukocyte | 4.09e-11 | 72 |
Ontology term | p-value | n |
---|---|---|
medulla oblongata | 2.89e-12 | 3 |
myelencephalon | 2.89e-12 | 3 |
future myelencephalon | 2.89e-12 | 3 |
brainstem | 2.18e-10 | 6 |
bone marrow | 2.48e-10 | 76 |
bone element | 2.64e-09 | 82 |
skeletal element | 3.75e-08 | 90 |
pituitary gland | 5.87e-08 | 2 |
immune system | 9.00e-08 | 93 |
hematopoietic system | 3.42e-07 | 98 |
blood island | 3.42e-07 | 98 |
skeletal system | 5.60e-07 | 100 |