FFCP PHASE1:Hg19::chr20:52771475..52771478,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C556 | |||
|description=CAGE_peak_at_chr20:52771475..52771478,- | |||
|id=chr20:52771475..52771478,- | |||
|ontology_enrichment_celltype=CL:0000066!7.03e-13!254;CL:0002076!8.81e-08!43;CL:0000223!3.55e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002586;4.15e-12;3!CL:0000149;3.49e-09;4!CL:1000415;3.13e-08;2!CL:0002076;1.01e-07;42!CL:0000077;9.96e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.52e-20,253;CL:0002586,4.66e-12,3;CL:0000223,1.05e-10,58;CL:0002076,6.53e-10,42;CL:0000149,3.80e-09,4;CL:1000415,2.91e-08,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!5.30e-13!106;DOID:0050687!3.86e-10!143;DOID:1749!4.57e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:7;1.10e-07;39!DOID:305;2.52e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.56e-17,106;DOID:0050687,5.99e-11,143;DOID:162,4.64e-09,235;DOID:14566,1.03e-08,239;DOID:7,7.67e-08,39 | |||
|ontology_enrichment_uberon=UBERON:0007625!3.22e-09!11;UBERON:0004119!3.88e-09!169;UBERON:0000925!3.88e-09!169;UBERON:0006595!3.88e-09!169;UBERON:0001007!8.14e-09!155;UBERON:0001555!8.14e-09!155;UBERON:0007026!8.14e-09!155;UBERON:0005911!3.14e-08!82;UBERON:0001004!4.96e-07!72;UBERON:0004807!5.33e-07!28;UBERON:0000063!5.70e-07!97;UBERON:0004921!8.82e-07!129;UBERON:0004185!8.82e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;3.88e-15;11!UBERON:0001781;4.15e-12;3!UBERON:0001782;4.15e-12;3!UBERON:0010371;1.58e-09;31!UBERON:0004807;1.69e-09;22!UBERON:0000020;7.58e-09;23!UBERON:0006562;1.61e-08;2!UBERON:0001032;2.01e-08;24!UBERON:0004456;2.01e-08;24!UBERON:0000019;2.38e-08;19!UBERON:0000047;2.38e-08;19!UBERON:0004088;2.38e-08;19!UBERON:0010230;2.38e-08;19!UBERON:0000488;2.61e-08;4!UBERON:0000970;6.97e-08;20!UBERON:0002104;1.84e-07;21!UBERON:0001456;1.84e-07;21!UBERON:0000966;2.02e-07;5!UBERON:0005388;2.02e-07;5!UBERON:0001802;2.02e-07;5!UBERON:0001444;4.69e-07;48 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,4.55e-15,11;UBERON:0004119,3.83e-13,160;UBERON:0000925,3.83e-13,160;UBERON:0006595,3.83e-13,160;UBERON:0001007,8.69e-13,145;UBERON:0001555,8.69e-13,145;UBERON:0007026,8.69e-13,145;UBERON:0001782,4.66e-12,3;UBERON:0005424,4.66e-12,3;UBERON:0005911,7.99e-12,82;UBERON:0004921,2.00e-09,118;UBERON:0001781,3.80e-09,4;UBERON:0000020,2.17e-08,24;UBERON:0001032,2.17e-08,24;UBERON:0004456,2.17e-08,24;UBERON:0000488,2.29e-08,4;UBERON:0001041,4.62e-08,87;UBERON:0001444,4.66e-08,49;UBERON:0000019,7.56e-08,20;UBERON:0000047,7.56e-08,20;UBERON:0010312,7.56e-08,20;UBERON:0004088,7.56e-08,20;UBERON:0010230,7.56e-08,20;UBERON:0003072,7.56e-08,20;UBERON:0004128,7.56e-08,20;UBERON:0003071,7.56e-08,20;UBERON:0003929,1.56e-07,54;UBERON:0000970,1.99e-07,21;UBERON:0002104,1.99e-07,21;UBERON:0004807,3.35e-07,28;UBERON:0001456,4.78e-07,22;UBERON:0000033,9.43e-07,56 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,1.72013755551056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0.553995408531877,0,0,0,0,0,0.290796477559129,0,0.727752183563449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.473447805734733,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0.253019692019503,0.318565414324097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0.567208902984407,1.33037638477538,1.49319135678314,0.523916301990851,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.635795703478686,0,0,0,0,0,0,0.252433774244115,0.0920498986422993,0.323292113637624,0,0,0,2.31913023795956,0.818238361772504,5.73609190778008,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0.168584690078102,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,1.3725424823882,1.53650399572076,0,0.201057944823262,0,0,0,0,0,0.352226082707465,0,0,0,3.1608175918371,0,0,0,0,0.93733833986777,0.16798212819886,0.283550194484773,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0.301439377059586,0,0.599837947092342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0.502548796003046,1.27587750330633,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664225598535437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,2.20557117333613,0,0,0,0,0,0.0770153371044148,0,0,0.316654886678627,0,0,0,0,0,0,0,0,0,0,0,1.28225062558195,23.6170544903788,12.3643789972435,0.309123034943167,0,0.082509499920588,0,0,0,0.096670718292122,0,0,0,0,0,0,0.0890320356467374,0,0.768760269460425,1.91419068741876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.97859703341646,1.09814811894422,0.589062011728432,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0.438450885253763,0,0,0,0,0,0,0,0,0,0,0,0,0,1.25088746543166,0,0,0.282431402330337,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0.281338832821026,0,0,0,0.19924798825107,0,0,0.511343412510774,0,0,0,0,0,0.493217028184668,0,0,0,0,0,2.86470537193757,0,0,2.16207551742449,1.5255219017566,0.709163045303809,0.344743373241465,2.04123229368278,0,0,0.361789315876224,0,0,0,0.219385397153973,0.10893846351899,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,1.30586246527318,0,0,0,0,0,0,0,0.104421949505455,0.067401132980677,0,0,0,0.782658475728359,0,0,0,0,0,0,0.311064574191741,0,0,0,0,0,0,0,0.489961987071888,1.21882889212564,0,0,0,0,0,0.290967049465258,0,0,0,0.19871461170299,0,3.32437350649165,1.44285876452761,0,1.19885765749278,0,1.4889757501569,0,0.14405479798815,0,1.64985824231757,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,3.46646002151784,2.22522817629149,3.77459845583435,0,0,0,0.408610218334727,0,0,0,0.2249738915515,0,0.121499113316049,0,5.98923375473906,0.629455057619977,0,0,0.191915197319445,0,0,0,0,0,0,1.19730191562487,0,0,0.113312091520126,0,0,0.129282956361551,0,68.0925614779631,0,0,0,0,0,0,0.121792598380896,0.638341257770182,0,0,0,0,0.942324577501406,0,0,0.1251909307065,0,0,0.0620964029413835,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.08370226891451,2.44736704506468,4.47722102703719,30.8801447160972,0.219284049578707,0.353378291891762,20.8347161332588,0,0,0,7.29263894825717,0,0,0,0.163565394255844,0,0.983091635014877,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0.848662649770126,0,0.123935764259002,0,0,0,0,0,0,0.192687675289379,0,0,0.205116364240755,0,0,0,0,0.196295437002051,0.11796972334774,0,9.70415595662841,0,0,0,0,0.40341013740704,0,0,19.1613143486813,18.7777229495647,0,0,0.620060389503552,0.0634158101939068,0,0,0,0.527613733078862,158.936459983657,0,0,0,0,0.177404740325278,0,0,0.0679697329768317,0,8.39176270276174,0.111231401892069,0.39246546425257,0,0,0,1.51149313853035,0.47775168788705,0,0,0,0,0,1.24329698497822,0,0,0,0,0,0.423387050190929,6.64409918777745,0,0,0,0.098150233615243,0,0,0,0,0,0,0,2.49732190632894,1.01651473835064,0,0.150962843566674,0,0,0,0,0,0.196308467114945,0,0.4226557275834,0,0,0,0,0,1.05868461514708,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,15.0256695858022,0.190941474834495,0,0.870866991587845,0,1.88585748440845,2.79716601031438,0.332660356546013,0.732629417498771,3.20182037633146,0,0,0,0.366724332548599,0,0.665756774185513,0.201273793591026,0 | |||
|short_description=p@chr20:52771475..52771478,- | |||
}} |
Revision as of 12:19, 21 January 2014
Short description: | p@chr20:52771475..52771478, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr20:52771475..52771478, - |
Coexpression cluster: | C556_pharyngeal_Gingival_Retinal_lung_Mallassezderived_Small_mesothelioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.52e-20 | 253 |
retinal pigment epithelial cell | 4.66e-12 | 3 |
endodermal cell | 1.05e-10 | 58 |
endo-epithelial cell | 6.53e-10 | 42 |
visual pigment cell | 3.80e-09 | 4 |
epithelial cell of gall bladder | 2.91e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
pigment epithelium of eye | 4.55e-15 | 11 |
endoderm-derived structure | 3.83e-13 | 160 |
endoderm | 3.83e-13 | 160 |
presumptive endoderm | 3.83e-13 | 160 |
digestive system | 8.69e-13 | 145 |
digestive tract | 8.69e-13 | 145 |
primitive gut | 8.69e-13 | 145 |
pigmented layer of retina | 4.66e-12 | 3 |
presumptive retinal pigmented epithelium | 4.66e-12 | 3 |
endo-epithelium | 7.99e-12 | 82 |
subdivision of digestive tract | 2.00e-09 | 118 |
layer of retina | 3.80e-09 | 4 |
sense organ | 2.17e-08 | 24 |
sensory system | 2.17e-08 | 24 |
entire sense organ system | 2.17e-08 | 24 |
atypical epithelium | 2.29e-08 | 4 |
foregut | 4.62e-08 | 87 |
subdivision of head | 4.66e-08 | 49 |
camera-type eye | 7.56e-08 | 20 |
simple eye | 7.56e-08 | 20 |
immature eye | 7.56e-08 | 20 |
ocular region | 7.56e-08 | 20 |
eyeball of camera-type eye | 7.56e-08 | 20 |
optic cup | 7.56e-08 | 20 |
optic vesicle | 7.56e-08 | 20 |
eye primordium | 7.56e-08 | 20 |
gut epithelium | 1.56e-07 | 54 |
eye | 1.99e-07 | 21 |
visual system | 1.99e-07 | 21 |
respiratory system epithelium | 3.35e-07 | 28 |
face | 4.78e-07 | 22 |
head | 9.43e-07 | 56 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.56e-17 | 106 |
cell type cancer | 5.99e-11 | 143 |
cancer | 4.64e-09 | 235 |
disease of cellular proliferation | 1.03e-08 | 239 |
disease of anatomical entity | 7.67e-08 | 39 |