FFCP PHASE1:Mm9::chr13:54695359..54695370,-: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr13:54695359..54695370,-|id=chr13:54695359..54695370,-|ontology_enrichment_celltype=CL:0002321!4.15e-14!70;CL:0000220!4.15e-14!70;CL:0000055!1.71e-10!50;CL:0000548!6.60e-10!115;CL:0000004!6.60e-10!115;CL:0000255!6.60e-10!115;CL:0002371!3.72e-09!118;CL:0000221!4.85e-09!44;CL:0000133!4.85e-09!44;CL:0000144!7.53e-09!121;CL:0000012!7.53e-09!121;CL:0002319!1.12e-08!43;CL:0000333!2.03e-08!10;CL:0000095!2.03e-08!10;CL:0000243!2.03e-08!10;CL:0000123!2.03e-08!10;CL:0000125!2.03e-08!10;CL:0000030!2.03e-08!10;CL:0000339!2.03e-08!10;CL:0002453!1.95e-07!8|ontology_enrichment_celltype_v019_2=CL:0000333,2.05e-17,10;CL:0000095,2.05e-17,10;CL:0000243,2.05e-17,10;CL:0000123,2.05e-17,10;CL:0000125,2.05e-17,10;CL:0000030,2.05e-17,10;CL:0000339,2.05e-17,10;CL:0002603,3.45e-15,2;CL:0002453,1.64e-14,8;CL:0002319,5.53e-12,43;CL:0000221,1.08e-11,44;CL:0000133,1.08e-11,44;CL:0000128,3.20e-11,6;CL:0000126,3.20e-11,6;CL:0000127,3.20e-11,6;CL:0002614,8.39e-10,3;CL:0002610,1.03e-09,3;CL:0002321,9.38e-09,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.79e-12!75;UBERON:0001016!1.79e-12!75;UBERON:0001017!1.52e-11!73;UBERON:0005743!1.52e-11!73;UBERON:0001049!1.12e-09!52;UBERON:0005068!1.12e-09!52;UBERON:0006241!1.12e-09!52;UBERON:0007135!1.12e-09!52;UBERON:0000955!3.85e-09!50;UBERON:0006238!3.85e-09!50;UBERON:0004121!5.06e-09!102;UBERON:0000924!5.06e-09!102;UBERON:0006601!5.06e-09!102;UBERON:0002616!1.37e-08!49;UBERON:0000033!7.58e-08!63;UBERON:0002020!1.08e-07!34;UBERON:0000064!5.72e-07!99|ontology_enrichment_uberon_v019_2=UBERON:0001016,7.00e-10,75;UBERON:0002038,8.39e-10,3;UBERON:0009663,8.39e-10,3;UBERON:0009661,8.39e-10,3;UBERON:0000125,8.39e-10,3;UBERON:0002308,8.39e-10,3;UBERON:0004684,1.03e-09,3;UBERON:0002275,1.03e-09,3;UBERON:0001017,2.28e-08,73;UBERON:0002037,4.82e-08,4;UBERON:0002680,4.82e-08,4;UBERON:0001895,4.82e-08,4;UBERON:0010092,4.82e-08,4;UBERON:0006215,4.82e-08,4;UBERON:0002950,1.43e-07,4;UBERON:0001891,1.43e-07,4;UBERON:0009616,1.43e-07,4;UBERON:0010286,1.43e-07,4;UBERON:0004121,1.51e-07,95;UBERON:0000924,1.51e-07,95;UBERON:0006601,1.51e-07,95;UBERON:0000073,2.53e-07,54|phase1_expression=0.160148847104794,0.348975407639361,0,0.30246421130683,0.500895729946347,0,0.233612640595526,0,0.140788722151667,0.234064526321993,0,0.0797721589953364,0,0.174840804837995,0,0,0,0,0,0,0.255129870453209,0,0,0,0.45881856213434,0.57423196411502,0,0.430942465371778,0.760093677825496,0.252030129759931,0.443461021310609,0,0,0,0.577703239502549,0.166234645358492,0.204169356262369,0,0,0,0,0,0,0.125896817975577,0.405507724878058,0.183546752161682,1.56478268869608,1.52617609466313,0.659058548203415,0.194429899074283,0.699932108126813,1.43752564364972,0,0.725362142011344,0,0.257259436035947,0.573066879877513,0.515672092277442,0,0,0,0.338844532069132,0,0.449949858640699,0,0,0.599200221036809,1.92109152660777,0.103689612308478,0.540023753326763,0,0.571301968807607,0.883474163806454,0.244981598429908,0,0,1.10115880999389,1.14918604276669,0.921639199537461,0.263772575460388,0.0914876436024097,0,0.558365998002762,1.12552522006336,1.22238598221448,0.294628585473668,0.284743361598206,0.559198337475902,1.06016670666458,0.226714680320357,0.289864488701678,0,1.3599426674155,0.539703191637817,0,0,0,0.170430322578058,0.259786004602869,0,0.281686839553361,0,0,0,0.216491041011214,0.760079596425296,0.505524445014783,0.11418387971906,0,0,0,0,0,0,0,0,0.741584903203122,0,0,0.161766849947409,0,0.484875253135222,0,0.292780797011547,0.209446706813455,0.255457055208591,0.479260498023681,0,0,0,0.457500602818626,0,0.347648640384553,0,0,0,0,0,0,0,0,0.229902104433473,0,0,0,0,0.281105173679186,0,0,0,0,0,0,0,0.205782136407943,0,0,0.257347907114715,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146199987425332,0,0,0,0.308713837137853,0.660837565967596,0,0,0,0,0.201683524623343,0,0.190225626112559,0,0.164698954724011,0,0,0,0.898819408654221,0,0,0,0.114248512609729,0,0.407302655690628,0,0.0701358198903186,0.0632365371242573,0,0,0,0,0,0.196558995113203,0.224862112384854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325929952884052,0,0,0,0,0.195133647857799,0,0.221464689648775,0,0,0,0.144649058581512,0,0,0,0,0,0.234423373184406,0,0.504941854408746,0,0,0,0,0,0.283076530788832,0,0.292255857911312,0,0.642642632843614,0.141940085208269,0,0,0,1.32745138339963,0,0,0,0,0,0,0.363533729477506,0.356497378384721,0.316036757935816,0,0,0.340439605753788,0.18006109403131,0.129358683782755,0,0,0.178368817602071,0.329098041204242,0.304464949114599,0.23467170806371,0,0,0,0.161464426695906,0.0603129249281559,0.238744688006273,0,0,0.556275906031529,0,0,0,0,0,0,0,0.139951452323658,0,0,0,0,0.108005340821801,0,0,0,0.165306911450672,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389762468933385,0,0,0,0,0,0,0,0,0.0962118416403295,0,0.453460767230423,0.221985953374065,0.0897138566094757,0.335769232728157,0,0.187682475451182,0,0,0,0.564751842617067,0,1.14579102687879,0.515559547031063,0.685082519770642,0,0,0,1.35942722695261,0.51776031175182,0,0,0.170733605754134,0,0,0,0,0,0,0,0,0,0,0,0.0574354689556133,0,0,0,0,0,0.685738504770831,0.177475806159338,0.238436189947321,0,0,0,0,0,0,0,0,0,0,0,0,0.249810577937946,0,0,0.382576664137687,0,0.231867835620421|short_description=p@chr13:54695359..54695370,-}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr13:54695359..54695370,- | |||
|description=CAGE_peak_at_chr13:54695359..54695370,- | |||
|id=chr13:54695359..54695370,- | |||
|ontology_enrichment_celltype=CL:0002321!4.15e-14!70;CL:0000220!4.15e-14!70;CL:0000055!1.71e-10!50;CL:0000548!6.60e-10!115;CL:0000004!6.60e-10!115;CL:0000255!6.60e-10!115;CL:0002371!3.72e-09!118;CL:0000221!4.85e-09!44;CL:0000133!4.85e-09!44;CL:0000144!7.53e-09!121;CL:0000012!7.53e-09!121;CL:0002319!1.12e-08!43;CL:0000333!2.03e-08!10;CL:0000095!2.03e-08!10;CL:0000243!2.03e-08!10;CL:0000123!2.03e-08!10;CL:0000125!2.03e-08!10;CL:0000030!2.03e-08!10;CL:0000339!2.03e-08!10;CL:0002453!1.95e-07!8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000333,2.05e-17,10;CL:0000095,2.05e-17,10;CL:0000243,2.05e-17,10;CL:0000123,2.05e-17,10;CL:0000125,2.05e-17,10;CL:0000030,2.05e-17,10;CL:0000339,2.05e-17,10;CL:0002603,3.45e-15,2;CL:0002453,1.64e-14,8;CL:0002319,5.53e-12,43;CL:0000221,1.08e-11,44;CL:0000133,1.08e-11,44;CL:0000128,3.20e-11,6;CL:0000126,3.20e-11,6;CL:0000127,3.20e-11,6;CL:0002614,8.39e-10,3;CL:0002610,1.03e-09,3;CL:0002321,9.38e-09,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.79e-12!75;UBERON:0001016!1.79e-12!75;UBERON:0001017!1.52e-11!73;UBERON:0005743!1.52e-11!73;UBERON:0001049!1.12e-09!52;UBERON:0005068!1.12e-09!52;UBERON:0006241!1.12e-09!52;UBERON:0007135!1.12e-09!52;UBERON:0000955!3.85e-09!50;UBERON:0006238!3.85e-09!50;UBERON:0004121!5.06e-09!102;UBERON:0000924!5.06e-09!102;UBERON:0006601!5.06e-09!102;UBERON:0002616!1.37e-08!49;UBERON:0000033!7.58e-08!63;UBERON:0002020!1.08e-07!34;UBERON:0000064!5.72e-07!99 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,7.00e-10,75;UBERON:0002038,8.39e-10,3;UBERON:0009663,8.39e-10,3;UBERON:0009661,8.39e-10,3;UBERON:0000125,8.39e-10,3;UBERON:0002308,8.39e-10,3;UBERON:0004684,1.03e-09,3;UBERON:0002275,1.03e-09,3;UBERON:0001017,2.28e-08,73;UBERON:0002037,4.82e-08,4;UBERON:0002680,4.82e-08,4;UBERON:0001895,4.82e-08,4;UBERON:0010092,4.82e-08,4;UBERON:0006215,4.82e-08,4;UBERON:0002950,1.43e-07,4;UBERON:0001891,1.43e-07,4;UBERON:0009616,1.43e-07,4;UBERON:0010286,1.43e-07,4;UBERON:0004121,1.51e-07,95;UBERON:0000924,1.51e-07,95;UBERON:0006601,1.51e-07,95;UBERON:0000073,2.53e-07,54 | |||
|phase1_expression=0.160148847104794,0.348975407639361,0,0.30246421130683,0.500895729946347,0,0.233612640595526,0,0.140788722151667,0.234064526321993,0,0.0797721589953364,0,0.174840804837995,0,0,0,0,0,0,0.255129870453209,0,0,0,0.45881856213434,0.57423196411502,0,0.430942465371778,0.760093677825496,0.252030129759931,0.443461021310609,0,0,0,0.577703239502549,0.166234645358492,0.204169356262369,0,0,0,0,0,0,0.125896817975577,0.405507724878058,0.183546752161682,1.56478268869608,1.52617609466313,0.659058548203415,0.194429899074283,0.699932108126813,1.43752564364972,0,0.725362142011344,0,0.257259436035947,0.573066879877513,0.515672092277442,0,0,0,0.338844532069132,0,0.449949858640699,0,0,0.599200221036809,1.92109152660777,0.103689612308478,0.540023753326763,0,0.571301968807607,0.883474163806454,0.244981598429908,0,0,1.10115880999389,1.14918604276669,0.921639199537461,0.263772575460388,0.0914876436024097,0,0.558365998002762,1.12552522006336,1.22238598221448,0.294628585473668,0.284743361598206,0.559198337475902,1.06016670666458,0.226714680320357,0.289864488701678,0,1.3599426674155,0.539703191637817,0,0,0,0.170430322578058,0.259786004602869,0,0.281686839553361,0,0,0,0.216491041011214,0.760079596425296,0.505524445014783,0.11418387971906,0,0,0,0,0,0,0,0,0.741584903203122,0,0,0.161766849947409,0,0.484875253135222,0,0.292780797011547,0.209446706813455,0.255457055208591,0.479260498023681,0,0,0,0.457500602818626,0,0.347648640384553,0,0,0,0,0,0,0,0,0.229902104433473,0,0,0,0,0.281105173679186,0,0,0,0,0,0,0,0.205782136407943,0,0,0.257347907114715,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146199987425332,0,0,0,0.308713837137853,0.660837565967596,0,0,0,0,0.201683524623343,0,0.190225626112559,0,0.164698954724011,0,0,0,0.898819408654221,0,0,0,0.114248512609729,0,0.407302655690628,0,0.0701358198903186,0.0632365371242573,0,0,0,0,0,0.196558995113203,0.224862112384854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325929952884052,0,0,0,0,0.195133647857799,0,0.221464689648775,0,0,0,0.144649058581512,0,0,0,0,0,0.234423373184406,0,0.504941854408746,0,0,0,0,0,0.283076530788832,0,0.292255857911312,0,0.642642632843614,0.141940085208269,0,0,0,1.32745138339963,0,0,0,0,0,0,0.363533729477506,0.356497378384721,0.316036757935816,0,0,0.340439605753788,0.18006109403131,0.129358683782755,0,0,0.178368817602071,0.329098041204242,0.304464949114599,0.23467170806371,0,0,0,0.161464426695906,0.0603129249281559,0.238744688006273,0,0,0.556275906031529,0,0,0,0,0,0,0,0.139951452323658,0,0,0,0,0.108005340821801,0,0,0,0.165306911450672,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389762468933385,0,0,0,0,0,0,0,0,0.0962118416403295,0,0.453460767230423,0.221985953374065,0.0897138566094757,0.335769232728157,0,0.187682475451182,0,0,0,0.564751842617067,0,1.14579102687879,0.515559547031063,0.685082519770642,0,0,0,1.35942722695261,0.51776031175182,0,0,0.170733605754134,0,0,0,0,0,0,0,0,0,0,0,0.0574354689556133,0,0,0,0,0,0.685738504770831,0.177475806159338,0.238436189947321,0,0,0,0,0,0,0,0,0,0,0,0,0.249810577937946,0,0,0.382576664137687,0,0.231867835620421 | |||
|short_description=p@chr13:54695359..54695370,- | |||
}} |
Latest revision as of 03:17, 6 August 2015
Short description: | p@chr13:54695359..54695370, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr13:54695359..54695370, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
migratory neural crest cell | 2.05e-17 | 10 |
neuron associated cell | 2.05e-17 | 10 |
glial cell (sensu Vertebrata) | 2.05e-17 | 10 |
neuron associated cell (sensu Vertebrata) | 2.05e-17 | 10 |
glial cell | 2.05e-17 | 10 |
glioblast | 2.05e-17 | 10 |
glioblast (sensu Vertebrata) | 2.05e-17 | 10 |
astrocyte of the cerebellum | 3.45e-15 | 2 |
oligodendrocyte precursor cell | 1.64e-14 | 8 |
neural cell | 5.53e-12 | 43 |
ectodermal cell | 1.08e-11 | 44 |
neurectodermal cell | 1.08e-11 | 44 |
oligodendrocyte | 3.20e-11 | 6 |
macroglial cell | 3.20e-11 | 6 |
astrocyte | 3.20e-11 | 6 |
neuron of the substantia nigra | 8.39e-10 | 3 |
raphe nuclei neuron | 1.03e-09 | 3 |
embryonic cell | 9.38e-09 | 70 |
Ontology term | p-value | n |
---|---|---|
nervous system | 7.00e-10 | 75 |
substantia nigra | 8.39e-10 | 3 |
telencephalic nucleus | 8.39e-10 | 3 |
midbrain nucleus | 8.39e-10 | 3 |
neural nucleus | 8.39e-10 | 3 |
nucleus of brain | 8.39e-10 | 3 |
raphe nuclei | 1.03e-09 | 3 |
reticular formation | 1.03e-09 | 3 |
central nervous system | 2.28e-08 | 73 |
cerebellum | 4.82e-08 | 4 |
regional part of metencephalon | 4.82e-08 | 4 |
metencephalon | 4.82e-08 | 4 |
future metencephalon | 4.82e-08 | 4 |
rhombic lip | 4.82e-08 | 4 |
regional part of midbrain | 1.43e-07 | 4 |
midbrain | 1.43e-07 | 4 |
presumptive midbrain | 1.43e-07 | 4 |
midbrain neural tube | 1.43e-07 | 4 |
ectoderm-derived structure | 1.51e-07 | 95 |
ectoderm | 1.51e-07 | 95 |
presumptive ectoderm | 1.51e-07 | 95 |
regional part of nervous system | 2.53e-07 | 54 |