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|ontology_enrichment_disease=
|ontology_enrichment_disease=
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|ontology_enrichment_uberon=UBERON:0005631!6.62e-09!14;UBERON:0000158!6.62e-09!14;UBERON:0006555!6.58e-08!17;UBERON:0005103!6.58e-08!17;UBERON:0000083!6.58e-08!17;UBERON:0009201!6.58e-08!17;UBERON:0004819!6.58e-08!17;UBERON:0006553!6.58e-08!17;UBERON:0003074!6.58e-08!17;UBERON:0003060!6.58e-08!17;UBERON:0002113!6.81e-08!27;UBERON:0003918!6.81e-08!27;UBERON:0005095!6.81e-08!27;UBERON:0007687!6.81e-08!27;UBERON:0000064!6.95e-08!219;UBERON:0000489!1.14e-07!32;UBERON:0004211!1.31e-07!16;UBERON:0001285!1.31e-07!16;UBERON:0007684!1.31e-07!16;UBERON:0003220!1.31e-07!16;UBERON:0004208!1.31e-07!16;UBERON:0004876!1.77e-07!20;UBERON:0003886!1.88e-07!63;UBERON:0000080!2.08e-07!18;UBERON:0002120!2.08e-07!18;UBERON:0004875!2.08e-07!18;UBERON:0005721!2.08e-07!18;UBERON:0005754!2.08e-07!18;UBERON:0007297!2.08e-07!18;UBERON:0000058!4.72e-07!26;UBERON:0005743!5.19e-07!86
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}}
}}

Revision as of 19:20, 8 August 2012


Full id: C3657_chorionic_mesenchymal_leiomyoblastoma_Wilms_anaplastic_Amniotic_endometrial



Phase1 CAGE Peaks

Hg19::chr17:54671047..54671075,+p1@NOG
Hg19::chr17:54671184..54671198,+p2@NOG
Hg19::chr17:54672417..54672422,+p@chr17:54672417..54672422
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
kidney cell1.75e-0818
kidney epithelial cell1.75e-0818
epithelial cell of nephron1.31e-0716
Uber Anatomy
Ontology termp-valuen
extraembryonic membrane6.62e-0914
membranous layer6.62e-0914
excretory tube6.58e-0817
mesonephric epithelium6.58e-0817
mesonephric tubule6.58e-0817
nephric duct6.58e-0817
kidney epithelium6.58e-0817
renal duct6.58e-0817
mesonephric duct6.58e-0817
pronephric duct6.58e-0817
kidney6.81e-0827
kidney mesenchyme6.81e-0827
kidney rudiment6.81e-0827
kidney field6.81e-0827
organ part6.95e-08219
cavitated compound organ1.14e-0732
nephron epithelium1.31e-0716
nephron1.31e-0716
uriniferous tubule1.31e-0716
metanephric mesenchyme1.31e-0716
nephrogenic mesenchyme1.31e-0716
urogenital ridge1.77e-0720
body cavity precursor1.88e-0763
mesonephros2.08e-0718
pronephros2.08e-0718
nephrogenic cord2.08e-0718
pronephric mesoderm2.08e-0718
rostral part of nephrogenic cord2.08e-0718
presumptive pronephric mesoderm2.08e-0718
duct4.72e-0726


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

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ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

This analysis result is provided for C0 - C305 clusters.

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