Personal tools

MCL coexpression mm9:1445: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 6: Line 6:
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0007100!1.82e-09!18;UBERON:0000948!1.82e-09!18;UBERON:0005498!1.82e-09!18;UBERON:0004140!1.82e-09!18;UBERON:0009881!1.82e-09!18;UBERON:0004141!1.82e-09!18;UBERON:0003084!1.82e-09!18;UBERON:0007005!1.82e-09!18;UBERON:0004139!1.82e-09!18;UBERON:0004291!1.82e-09!18;UBERON:0004535!2.14e-09!23;UBERON:0001009!2.14e-09!23;UBERON:0000468!1.52e-08!333;UBERON:0002021!2.39e-08!10;UBERON:0000411!2.39e-08!10;UBERON:0001950!2.39e-08!10;UBERON:0000464!5.44e-08!57;UBERON:0002048!6.04e-08!14;UBERON:0000117!6.04e-08!14;UBERON:0000171!6.04e-08!14;UBERON:0000170!6.04e-08!14;UBERON:0005597!6.04e-08!14;UBERON:0000118!6.04e-08!14;UBERON:0004111!6.75e-08!122;UBERON:0005153!3.08e-07!17;UBERON:0000025!6.38e-07!114
|ontology_enrichment_uberon=UBERON:0007100!1.82e-09!18;UBERON:0000948!1.82e-09!18;UBERON:0005498!1.82e-09!18;UBERON:0004140!1.82e-09!18;UBERON:0009881!1.82e-09!18;UBERON:0004141!1.82e-09!18;UBERON:0003084!1.82e-09!18;UBERON:0007005!1.82e-09!18;UBERON:0004139!1.82e-09!18;UBERON:0004291!1.82e-09!18;UBERON:0004535!2.14e-09!23;UBERON:0001009!2.14e-09!23;UBERON:0000468!1.52e-08!333;UBERON:0002021!2.39e-08!10;UBERON:0000411!2.39e-08!10;UBERON:0001950!2.39e-08!10;UBERON:0000464!5.44e-08!57;UBERON:0002048!6.04e-08!14;UBERON:0000117!6.04e-08!14;UBERON:0000171!6.04e-08!14;UBERON:0000170!6.04e-08!14;UBERON:0005597!6.04e-08!14;UBERON:0000118!6.04e-08!14;UBERON:0004111!6.75e-08!122;UBERON:0005153!3.08e-07!17;UBERON:0000025!6.38e-07!114
|tfbs_overrepresentation_for_novel_motifs=0.491922,0.0600685,0.464605,0.535892,0.346849,0.550971,0.645383,1.28052,0.257202,0.0835344,0.599767,0.632897,0.692139,0.6581,0.955327,0,0.856992,0.338549,0.232269,0.143775,0.426133,0.108444,0.657163,0.345236,0.472505,0.686615,0.223823,0.572827,0.394364,0.181062,0.558142,0.960397,0.336199,0.204204,0.364821,0.0363535,0.326478,0.629145,0.303703,0.27383,0.907317,0.56353,0.327433,0.366415,0.161543,0.524258,0.77511,0.589246,0.594982,0.397446,0.839084,0.714419,0.174327,1.10437,1.12205,0.66551,0.406788,0.619643,0.21472,0.663395,0.939962,0.724164,0.742129,0.827522,0.677043,0.869046,1.2599,1.61148,0.935192,1.46355,0.444872,0.253541,0.11437,1.156,0.208101,0.19692,0.204132,0.763395,0.922432,0.430551,0.708505,0.874787,0.722675,0.676326,1.03903,0.0539203,0.0610418,0.181203,0.780154,1.77427,1.33021,1.04409,0.973447,0.35304,0.2995,0.769162,0.244935,0.976308,0.775372,0.160254,0.326561,0.960112,1.08669,0.839694,0.838613,0.563071,0.8998,0.585058,0.435642,0.428007,0.484547,1.0885,0.431734,0.605144,1.33732,0.90315,0.0704207,0.53982,0.858327,0.322606,1.16147,0.805995,0.688501,0.762461,1.39185,0.926209,0.65384,0.966541,1.25836,0.356163,1.06946,0.52828,1.2285,0.679647,1.35909,0.106956,0.500709,0.564999,1.30952,2.14327,1.74232,1.26465,1.67199,0.971067,0.831964,0.564002,0.778321,2.10357,1.25623,0.348692,0.183562,0.0987301,1.10596,0.287383,1.62569,1.18867,0.71546,0.376898,0.48935,0.500417,1.31911,1.03816,0.926663,0.482185,0.82857,0.671017,0.325308,0.63125,0.131395
}}
}}

Revision as of 19:55, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr2:6816681..6816688,-p@chr2:6816681..6816688
-
Mm9::chr2:6842467..6842470,-p@chr2:6842467..6842470
-
Mm9::chr2:6859476..6859482,-p@chr2:6859476..6859482
-
Mm9::chr2:6870481..6870490,-p@chr2:6870481..6870490
-
Mm9::chr2:6933696..6933700,-p@chr2:6933696..6933700
-
Mm9::chr2:6965369..6965370,-p@chr2:6965369..6965370
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
primary circulatory organ1.82e-0918
heart1.82e-0918
primitive heart tube1.82e-0918
primary heart field1.82e-0918
anterior lateral plate mesoderm1.82e-0918
heart tube1.82e-0918
heart primordium1.82e-0918
cardiac mesoderm1.82e-0918
cardiogenic plate1.82e-0918
heart rudiment1.82e-0918
cardiovascular system2.14e-0923
circulatory system2.14e-0923
multi-cellular organism1.52e-08333
occipital lobe2.39e-0810
visual cortex2.39e-0810
neocortex2.39e-0810
anatomical space5.44e-0857
lung6.04e-0814
respiratory tube6.04e-0814
respiration organ6.04e-0814
pair of lungs6.04e-0814
lung primordium6.04e-0814
lung bud6.04e-0814
anatomical conduit6.75e-08122
epithelial bud3.08e-0717
tube6.38e-07114


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}