FFCP PHASE1:Hg19::chr11:104034662..104034710,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=80310|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=30620|TSSclassifier=S|UniProt=Q9GZP0|association_with_transcript=124bp_to_ENST00000393158_5end|coexpression_cluster_id=C38|description=CAGE_peak_7_at_PDGFD_5end|id=chr11:104034662..104034710,-|ontology_enrichment_celltype=CL:0000136!1.16e-08!15|ontology_enrichment_celltype_v019=CL:0000136;4.80e-25;13!CL:0002615;4.72e-21;3!CL:0002617;4.87e-15;2!CL:0000746;5.73e-10;3!CL:0000214;5.73e-10;3!CL:0000511;1.90e-08;1!CL:0002625;1.90e-08;1!CL:0000216;1.90e-08;1!CL:0002616;1.90e-08;1!CL:0000737;1.10e-07;4!CL:0000153;2.03e-07;9!CL:0000447;2.03e-07;9|ontology_enrichment_celltype_v019_2=CL:0000136,1.67e-21,15;CL:0002615,6.22e-21,3;CL:0002617,4.89e-15,2;CL:0000214,4.38e-10,3;CL:0000746,6.28e-10,3;CL:0000513,6.28e-10,3;CL:0002616,1.77e-08,1;CL:0000511,2.04e-08,1;CL:0002625,2.04e-08,1;CL:0000216,2.04e-08,1;CL:0000737,1.18e-07,4;CL:0000153,1.78e-07,9;CL:0000447,1.78e-07,9|ontology_enrichment_development_v019=CL:0000513;5.73e-10;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3371;1.65e-08;1!DOID:4549;1.65e-08;1!DOID:5861;1.65e-08;1!DOID:6496;1.65e-08;1|ontology_enrichment_disease_v019_2=DOID:3371,1.65e-08,1;DOID:4549,1.65e-08,1;DOID:5861,1.65e-08,1;DOID:6496,1.65e-08,1|ontology_enrichment_uberon=UBERON:0007023!8.00e-12!115;UBERON:0004457!2.46e-09!12;UBERON:0000042!2.46e-09!12;UBERON:0003688!2.80e-08!6;UBERON:0002358!2.80e-08!6;UBERON:0003684!2.80e-08!6;UBERON:0001178!2.80e-08!6|ontology_enrichment_uberon_v019=UBERON:0004457;1.76e-26;9!UBERON:0000042;1.76e-26;9!UBERON:0003688;3.16e-18;6!UBERON:0002358;3.16e-18;6!UBERON:0003684;3.16e-18;6!UBERON:0001178;3.16e-18;6!UBERON:0006915;5.73e-10;3!UBERON:0007616;5.73e-10;3!UBERON:0002217;5.73e-10;3!UBERON:0002018;5.73e-10;3!UBERON:0001136;1.90e-08;1!UBERON:0001343;1.90e-08;1!UBERON:0004910;1.90e-08;1!UBERON:0004813;1.90e-08;1!UBERON:0002135;6.62e-08;1|ontology_enrichment_uberon_v019_2=UBERON:0004457,7.81e-20,12;UBERON:0000042,7.81e-20,12;UBERON:0003688,3.18e-18,6;UBERON:0002358,3.18e-18,6;UBERON:0003684,3.18e-18,6;UBERON:0001178,3.18e-18,6;UBERON:0006915,4.38e-10,3;UBERON:0007616,4.38e-10,3;UBERON:0002217,4.38e-10,3;UBERON:0002018,4.38e-10,3;UBERON:0001136,2.04e-08,1;UBERON:0001343,2.04e-08,1;UBERON:0004910,2.04e-08,1;UBERON:0005154,2.04e-08,1;UBERON:0005295,2.04e-08,1;UBERON:0004813,2.04e-08,1;UBERON:0005297,2.04e-08,1;UBERON:0005294,2.04e-08,1;UBERON:0010141,2.04e-08,1;UBERON:0005891,2.04e-08,1;UBERON:0002135,5.40e-08,1|phase1_expression=3.45188920614058,2.5692062866918,2.96004248601539,1.0007329835313,2.68176656656373,3.48935409640147,0,0,0.261185628199839,0,0,0,0,0,0.331397375727916,0.672325146451775,0.602694528023977,0,0,0,0,0,0.85870796139317,0.136874425072884,0.125542639594803,0,0,0,0.393364276848904,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,2.43806866313962,1.34140171940727,0.639312809217652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39752481473341,0,0,0,0,0,0,1.03366703667732,0.71153252537342,0.33472061276467,0,0,0.24406205754817,0,0,0,0,0.112611480483322,0,0,0.183201743930407,0,0,0,0,0,0.132409180813219,0.286836620748814,0,0,0,0,1.8672662123986,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0.494533858557114,0,0,0,0,0,0,0,0.300476117813194,0.113432183160021,0,2.13557388818567,1.27159140695737,0,0,0,0.37223371266318,0,0.487185025805993,0,0.828449087780694,1.93975268182574,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0.380508304469197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0.714889968290738,0.542621605391443,0,0,0.355391948742546,0,0.904318131178758,0.871533458600294,0.199945982364114,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0.215627574859517,0.256686072559497,1.27047312111232,0,0,0,1.27587750330633,0,0,0,0.49076596687656,0.500170521059677,0,0,0,0,0,0.902838299183157,0,0,0,0,0.0868836144680828,0,0,0.206768026122887,0,0.106727557803444,0,0,0,0.744323423456331,0.61384789315225,1.12264037773229,0.768834895534206,1.53512174720011,0.64341568457443,0,0,0,0,0.519254429183621,0,0,0,0,0,0,0.917870904715969,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0.206082023295445,0.0915694648183434,0,0,0,3.21367859688319,0,0,0,0,0,0.145016693914229,0,0.178064071293475,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0.316379424718726,0.190630193923825,0.255897791311334,0,0,0,0.539617372749944,0.274537029736055,0,0,0,0,0,0,0,0.272999822815972,0.282810863907425,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0.211107635297664,2.63435914367922,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0.556812347790485,0,0,0.33307196799782,0,0,0.73254089635947,0.24272104349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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=80310 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30620 | |||
|TSSclassifier=S | |||
|UniProt=Q9GZP0 | |||
|association_with_transcript=124bp_to_ENST00000393158_5end | |||
|coexpression_cluster_id=C38 | |||
|description=CAGE_peak_7_at_PDGFD_5end | |||
|id=chr11:104034662..104034710,- | |||
|ontology_enrichment_celltype=CL:0000136!1.16e-08!15 | |||
|ontology_enrichment_celltype_v019=CL:0000136;4.80e-25;13!CL:0002615;4.72e-21;3!CL:0002617;4.87e-15;2!CL:0000746;5.73e-10;3!CL:0000214;5.73e-10;3!CL:0000511;1.90e-08;1!CL:0002625;1.90e-08;1!CL:0000216;1.90e-08;1!CL:0002616;1.90e-08;1!CL:0000737;1.10e-07;4!CL:0000153;2.03e-07;9!CL:0000447;2.03e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,1.67e-21,15;CL:0002615,6.22e-21,3;CL:0002617,4.89e-15,2;CL:0000214,4.38e-10,3;CL:0000746,6.28e-10,3;CL:0000513,6.28e-10,3;CL:0002616,1.77e-08,1;CL:0000511,2.04e-08,1;CL:0002625,2.04e-08,1;CL:0000216,2.04e-08,1;CL:0000737,1.18e-07,4;CL:0000153,1.78e-07,9;CL:0000447,1.78e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000513;5.73e-10;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3371;1.65e-08;1!DOID:4549;1.65e-08;1!DOID:5861;1.65e-08;1!DOID:6496;1.65e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,1.65e-08,1;DOID:4549,1.65e-08,1;DOID:5861,1.65e-08,1;DOID:6496,1.65e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!8.00e-12!115;UBERON:0004457!2.46e-09!12;UBERON:0000042!2.46e-09!12;UBERON:0003688!2.80e-08!6;UBERON:0002358!2.80e-08!6;UBERON:0003684!2.80e-08!6;UBERON:0001178!2.80e-08!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;1.76e-26;9!UBERON:0000042;1.76e-26;9!UBERON:0003688;3.16e-18;6!UBERON:0002358;3.16e-18;6!UBERON:0003684;3.16e-18;6!UBERON:0001178;3.16e-18;6!UBERON:0006915;5.73e-10;3!UBERON:0007616;5.73e-10;3!UBERON:0002217;5.73e-10;3!UBERON:0002018;5.73e-10;3!UBERON:0001136;1.90e-08;1!UBERON:0001343;1.90e-08;1!UBERON:0004910;1.90e-08;1!UBERON:0004813;1.90e-08;1!UBERON:0002135;6.62e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004457,7.81e-20,12;UBERON:0000042,7.81e-20,12;UBERON:0003688,3.18e-18,6;UBERON:0002358,3.18e-18,6;UBERON:0003684,3.18e-18,6;UBERON:0001178,3.18e-18,6;UBERON:0006915,4.38e-10,3;UBERON:0007616,4.38e-10,3;UBERON:0002217,4.38e-10,3;UBERON:0002018,4.38e-10,3;UBERON:0001136,2.04e-08,1;UBERON:0001343,2.04e-08,1;UBERON:0004910,2.04e-08,1;UBERON:0005154,2.04e-08,1;UBERON:0005295,2.04e-08,1;UBERON:0004813,2.04e-08,1;UBERON:0005297,2.04e-08,1;UBERON:0005294,2.04e-08,1;UBERON:0010141,2.04e-08,1;UBERON:0005891,2.04e-08,1;UBERON:0002135,5.40e-08,1 | |||
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| |||
|short_description=p7@PDGFD | |||
}} |
Revision as of 15:26, 10 September 2013
Short description: | p7@PDGFD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_PDGFD_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | 124bp_to_ENST00000393158_5end |
EntrezGene: | PDGFD |
HGNC: | 30620 |
UniProt: | Q9GZP0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 1.67e-21 | 15 |
adipocyte of omentum tissue | 6.22e-21 | 3 |
adipocyte of breast | 4.89e-15 | 2 |
synovial cell | 4.38e-10 | 3 |
cardiac muscle cell | 6.28e-10 | 3 |
cardiac muscle myoblast | 6.28e-10 | 3 |
perirenal adipocyte cell | 1.77e-08 | 1 |
androgen binding protein secreting cell | 2.04e-08 | 1 |
seminiferous tubule epithelial cell | 2.04e-08 | 1 |
Sertoli cell | 2.04e-08 | 1 |
striated muscle cell | 1.18e-07 | 4 |
GAG secreting cell | 1.78e-07 | 9 |
carbohydrate secreting cell | 1.78e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
cavity lining | 7.81e-20 | 12 |
serous membrane | 7.81e-20 | 12 |
omentum | 3.18e-18 | 6 |
peritoneum | 3.18e-18 | 6 |
abdominal cavity | 3.18e-18 | 6 |
visceral peritoneum | 3.18e-18 | 6 |
stratified squamous epithelium | 4.38e-10 | 3 |
layer of synovial tissue | 4.38e-10 | 3 |
synovial joint | 4.38e-10 | 3 |
synovial membrane of synovial joint | 4.38e-10 | 3 |
mesothelium | 2.04e-08 | 1 |
seminiferous tubule of testis | 2.04e-08 | 1 |
epithelium of male gonad | 2.04e-08 | 1 |
epithelial cord | 2.04e-08 | 1 |
sex cord | 2.04e-08 | 1 |
seminiferous tubule epithelium | 2.04e-08 | 1 |
testis sex cord | 2.04e-08 | 1 |
genital ridge | 2.04e-08 | 1 |
primitive sex cord of indifferent gonad | 2.04e-08 | 1 |
coelomic epithelium | 2.04e-08 | 1 |
mitral valve | 5.40e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 1.65e-08 | 1 |
extraosseous chondrosarcoma | 1.65e-08 | 1 |
myxoid chondrosarcoma | 1.65e-08 | 1 |
extraskeletal myxoid chondrosarcoma | 1.65e-08 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.