FFCP PHASE1:Hg19::chr12:6659665..6659674,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=25900|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=24970|TSSclassifier=S|UniProt=|association_with_transcript=-32bp_to_ENST00000471408,uc001qpb.1_5end|coexpression_cluster_id=C65|description=CAGE_peak_9_at_IFFO1_5end|id=chr12:6659665..6659674,-|ontology_enrichment_celltype=CL:0002057!4.55e-69!42;CL:0000860!1.17e-63!45;CL:0002194!2.29e-63!63;CL:0000576!2.29e-63!63;CL:0000040!2.29e-63!63;CL:0000559!2.29e-63!63;CL:0002009!5.12e-61!65;CL:0000839!1.00e-55!70;CL:0000557!9.33e-55!71;CL:0000766!2.73e-50!76;CL:0000763!5.01e-40!112;CL:0000049!5.01e-40!112;CL:0002087!5.98e-32!119;CL:0000738!2.06e-26!140;CL:0002031!9.86e-26!124;CL:0000037!1.16e-25!172;CL:0000566!1.16e-25!172;CL:0000988!2.05e-23!182;CL:0002032!1.64e-22!165;CL:0000837!1.64e-22!165;CL:0002393!6.34e-08!9;CL:0002397!6.34e-08!9;CL:0000842!4.95e-07!3|ontology_enrichment_celltype_v019=CL:0000860;2.36e-124;33!CL:0002057;2.36e-124;33!CL:0000473;6.44e-88;39!CL:0000234;6.44e-88;39!CL:0000576;8.66e-67;48!CL:0000766;1.36e-29;69!CL:0000763;8.84e-17;100!CL:0002087;4.37e-14;104!CL:0000738;2.65e-11;136|ontology_enrichment_celltype_v019_2=CL:0000860,5.41e-108,42;CL:0002057,5.41e-108,42;CL:0000473,6.45e-94,48;CL:0000234,6.45e-94,48;CL:0002194,5.98e-80,59;CL:0000576,5.98e-80,59;CL:0000040,5.98e-80,59;CL:0000559,5.98e-80,59;CL:0002009,3.22e-77,61;CL:0000839,4.21e-71,66;CL:0000557,5.50e-70,67;CL:0000766,7.24e-65,72;CL:0000763,7.55e-42,108;CL:0000049,7.55e-42,108;CL:0002087,4.99e-39,115;CL:0002031,3.26e-37,120;CL:0000738,2.72e-32,136;CL:0002032,1.53e-26,161;CL:0000837,1.53e-26,161;CL:0000037,3.09e-25,168;CL:0000988,1.04e-23,177;CL:0000134,2.56e-09,354;CL:0002320,4.91e-09,361;CL:0000219,4.86e-08,386;CL:0000048,8.07e-07,427|ontology_enrichment_development_v019=CL:0002057;5.03e-78;42!CL:0000049;1.36e-14;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!6.26e-50!102;UBERON:0003061!6.26e-50!102;UBERON:0002371!4.08e-47!80;UBERON:0002193!4.10e-44!112;UBERON:0001474!6.60e-43!86;UBERON:0004765!1.42e-34!101;UBERON:0001434!1.42e-34!101;UBERON:0002405!3.59e-30!115;UBERON:0003081!1.81e-18!216;UBERON:0002204!8.30e-17!167;UBERON:0007023!4.17e-10!115;UBERON:0001049!1.22e-09!57;UBERON:0005068!1.22e-09!57;UBERON:0006241!1.22e-09!57;UBERON:0007135!1.22e-09!57;UBERON:0002616!4.27e-07!59;UBERON:0002780!5.39e-07!41;UBERON:0001890!5.39e-07!41;UBERON:0006240!5.39e-07!41;UBERON:0003075!6.03e-07!86;UBERON:0007284!6.03e-07!86;UBERON:0003080!9.29e-07!42|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.00e-61,76;UBERON:0001474,1.79e-56,82;UBERON:0002390,5.66e-54,98;UBERON:0003061,5.66e-54,98;UBERON:0004765,4.37e-51,90;UBERON:0002405,2.66e-49,93;UBERON:0002193,1.42e-48,108;UBERON:0001434,1.51e-45,100;UBERON:0002204,2.04e-25,167;UBERON:0003081,1.28e-23,203;UBERON:0000926,2.10e-13,315;UBERON:0004120,2.10e-13,315;UBERON:0006603,2.10e-13,315;UBERON:0002384,1.19e-08,371|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553995408531877,0.200544447470142,0.434021741431704,0.895661896959697,0,1.28787783817093,5.52513307362346,4.91238726795452,7.76268995801012,3.25400651667958,4.11167888021826,1.23882548358041,1.43846196161075,4.09857130446561,1.41889337933151,0.689491361473237,1.29096936716765,1.35426486594342,2.82363509313907,4.09359225086769,3.59557575112135,2.75475503133812,3.53021929783703,1.91801137739712,4.94776950280074,7.38015533200038,4.26224750532694,1.16083695451434,1.13477044938228,0,2.00998932205395,2.08593167368081,0.868755378820466,0,1.10483290796269,0.949387162322653,0.422510572623884,0,0,0.898629049171961,1.35159203557356,1.6072558669708,0,0.59675003159727,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738651018262192,0,0.891786973732369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.647142602455851,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318203247925937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0,0,2.59389324477087,1.08006287447623,0.79312517629427,0,0,0,0,0,0,0,0,0.191505370132367,0.211673582723883,0,0,0,0.156679895773023,0,0,0,0.403599414382095,0.851692475380653,0,0.307240764308458,0.447352215784832,0.333698283423817,0.586164286206121,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=25900 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24970 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-32bp_to_ENST00000471408,uc001qpb.1_5end | |||
|coexpression_cluster_id=C65 | |||
|description=CAGE_peak_9_at_IFFO1_5end | |||
|id=chr12:6659665..6659674,- | |||
|ontology_enrichment_celltype=CL:0002057!4.55e-69!42;CL:0000860!1.17e-63!45;CL:0002194!2.29e-63!63;CL:0000576!2.29e-63!63;CL:0000040!2.29e-63!63;CL:0000559!2.29e-63!63;CL:0002009!5.12e-61!65;CL:0000839!1.00e-55!70;CL:0000557!9.33e-55!71;CL:0000766!2.73e-50!76;CL:0000763!5.01e-40!112;CL:0000049!5.01e-40!112;CL:0002087!5.98e-32!119;CL:0000738!2.06e-26!140;CL:0002031!9.86e-26!124;CL:0000037!1.16e-25!172;CL:0000566!1.16e-25!172;CL:0000988!2.05e-23!182;CL:0002032!1.64e-22!165;CL:0000837!1.64e-22!165;CL:0002393!6.34e-08!9;CL:0002397!6.34e-08!9;CL:0000842!4.95e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.36e-124;33!CL:0002057;2.36e-124;33!CL:0000473;6.44e-88;39!CL:0000234;6.44e-88;39!CL:0000576;8.66e-67;48!CL:0000766;1.36e-29;69!CL:0000763;8.84e-17;100!CL:0002087;4.37e-14;104!CL:0000738;2.65e-11;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.41e-108,42;CL:0002057,5.41e-108,42;CL:0000473,6.45e-94,48;CL:0000234,6.45e-94,48;CL:0002194,5.98e-80,59;CL:0000576,5.98e-80,59;CL:0000040,5.98e-80,59;CL:0000559,5.98e-80,59;CL:0002009,3.22e-77,61;CL:0000839,4.21e-71,66;CL:0000557,5.50e-70,67;CL:0000766,7.24e-65,72;CL:0000763,7.55e-42,108;CL:0000049,7.55e-42,108;CL:0002087,4.99e-39,115;CL:0002031,3.26e-37,120;CL:0000738,2.72e-32,136;CL:0002032,1.53e-26,161;CL:0000837,1.53e-26,161;CL:0000037,3.09e-25,168;CL:0000988,1.04e-23,177;CL:0000134,2.56e-09,354;CL:0002320,4.91e-09,361;CL:0000219,4.86e-08,386;CL:0000048,8.07e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;5.03e-78;42!CL:0000049;1.36e-14;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!6.26e-50!102;UBERON:0003061!6.26e-50!102;UBERON:0002371!4.08e-47!80;UBERON:0002193!4.10e-44!112;UBERON:0001474!6.60e-43!86;UBERON:0004765!1.42e-34!101;UBERON:0001434!1.42e-34!101;UBERON:0002405!3.59e-30!115;UBERON:0003081!1.81e-18!216;UBERON:0002204!8.30e-17!167;UBERON:0007023!4.17e-10!115;UBERON:0001049!1.22e-09!57;UBERON:0005068!1.22e-09!57;UBERON:0006241!1.22e-09!57;UBERON:0007135!1.22e-09!57;UBERON:0002616!4.27e-07!59;UBERON:0002780!5.39e-07!41;UBERON:0001890!5.39e-07!41;UBERON:0006240!5.39e-07!41;UBERON:0003075!6.03e-07!86;UBERON:0007284!6.03e-07!86;UBERON:0003080!9.29e-07!42 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.00e-61,76;UBERON:0001474,1.79e-56,82;UBERON:0002390,5.66e-54,98;UBERON:0003061,5.66e-54,98;UBERON:0004765,4.37e-51,90;UBERON:0002405,2.66e-49,93;UBERON:0002193,1.42e-48,108;UBERON:0001434,1.51e-45,100;UBERON:0002204,2.04e-25,167;UBERON:0003081,1.28e-23,203;UBERON:0000926,2.10e-13,315;UBERON:0004120,2.10e-13,315;UBERON:0006603,2.10e-13,315;UBERON:0002384,1.19e-08,371 | |||
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|short_description=p9@IFFO1 | |||
}} |
Revision as of 00:01, 11 September 2013
Short description: | p9@IFFO1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_IFFO1_5end |
Coexpression cluster: | C65_CD14_Eosinophils_Monocytederived_Basophils_immature_Macrophage_Neutrophils |
Association with transcript: | -32bp_to_ENST00000471408, uc001qpb.1_5end |
EntrezGene: | IFFO1 |
HGNC: | 24970 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.41e-108 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.41e-108 | 42 |
defensive cell | 6.45e-94 | 48 |
phagocyte | 6.45e-94 | 48 |
monopoietic cell | 5.98e-80 | 59 |
monocyte | 5.98e-80 | 59 |
monoblast | 5.98e-80 | 59 |
promonocyte | 5.98e-80 | 59 |
macrophage dendritic cell progenitor | 3.22e-77 | 61 |
myeloid lineage restricted progenitor cell | 4.21e-71 | 66 |
granulocyte monocyte progenitor cell | 5.50e-70 | 67 |
myeloid leukocyte | 7.24e-65 | 72 |
myeloid cell | 7.55e-42 | 108 |
common myeloid progenitor | 7.55e-42 | 108 |
nongranular leukocyte | 4.99e-39 | 115 |
hematopoietic lineage restricted progenitor cell | 3.26e-37 | 120 |
leukocyte | 2.72e-32 | 136 |
hematopoietic oligopotent progenitor cell | 1.53e-26 | 161 |
hematopoietic multipotent progenitor cell | 1.53e-26 | 161 |
hematopoietic stem cell | 3.09e-25 | 168 |
hematopoietic cell | 1.04e-23 | 177 |
mesenchymal cell | 2.56e-09 | 354 |
connective tissue cell | 4.91e-09 | 361 |
motile cell | 4.86e-08 | 386 |
multi fate stem cell | 8.07e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.00e-61 | 76 |
bone element | 1.79e-56 | 82 |
hematopoietic system | 5.66e-54 | 98 |
blood island | 5.66e-54 | 98 |
skeletal element | 4.37e-51 | 90 |
immune system | 2.66e-49 | 93 |
hemolymphoid system | 1.42e-48 | 108 |
skeletal system | 1.51e-45 | 100 |
musculoskeletal system | 2.04e-25 | 167 |
lateral plate mesoderm | 1.28e-23 | 203 |
mesoderm | 2.10e-13 | 315 |
mesoderm-derived structure | 2.10e-13 | 315 |
presumptive mesoderm | 2.10e-13 | 315 |
connective tissue | 1.19e-08 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.