FFCP PHASE1:Hg19::chr13:76210760..76210803,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4008|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6646|TSSclassifier=S|UniProt=E9PMP7|association_with_transcript=301bp_to_ENST00000377499,uc001vjt.1_5end|coexpression_cluster_id=C1189|description=CAGE_peak_3_at_LMO7_5end|id=chr13:76210760..76210803,+|ontology_enrichment_celltype=CL:0000055!7.36e-35!180;CL:0000057!3.26e-21!75;CL:0002620!3.26e-12!23;CL:0000680!8.50e-12!57;CL:0000056!8.50e-12!57;CL:0000355!8.50e-12!57;CL:0000192!2.51e-10!42;CL:0000514!2.51e-10!42;CL:0000187!3.01e-10!54;CL:0000048!3.26e-09!430;CL:0000183!4.42e-09!59;CL:0000359!7.04e-09!32;CL:0000723!1.22e-08!436;CL:0000393!1.81e-08!60;CL:0000211!1.81e-08!60;CL:0000034!8.61e-08!444|ontology_enrichment_celltype_v019=CL:0002620;3.74e-15;23!CL:0000057;3.42e-10;73!CL:0002320;3.31e-09;188!CL:0000499;2.38e-08;28!CL:0002334;4.07e-08;12|ontology_enrichment_celltype_v019_2=CL:0000057,2.26e-27,76;CL:0000048,7.82e-18,427;CL:0000723,4.40e-17,433;CL:0000034,1.31e-16,441;CL:0002620,5.77e-15,23;CL:0002320,9.12e-12,361;CL:0000134,1.26e-11,354;CL:0000219,5.97e-10,386;CL:0000499,2.23e-08,28;CL:0002334,3.71e-08,12;CL:0000680,2.61e-07,58;CL:0000056,2.61e-07,58;CL:0000355,2.61e-07,58;CL:0000192,3.17e-07,43;CL:0000514,3.17e-07,43|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:2394;7.98e-08;14!DOID:17;8.43e-07;5!DOID:450;8.43e-07;5!DOID:66;8.43e-07;5!DOID:423;8.43e-07;5!DOID:0080000;8.43e-07;5!DOID:11722;8.43e-07;5|ontology_enrichment_disease_v019_2=DOID:2394,5.97e-08,14;DOID:17,7.93e-07,5;DOID:450,7.93e-07,5;DOID:66,7.93e-07,5;DOID:423,7.93e-07,5;DOID:0080000,7.93e-07,5;DOID:11722,7.93e-07,5|ontology_enrichment_uberon=UBERON:0000914!1.08e-13!83;UBERON:0002329!1.08e-13!83;UBERON:0003077!1.08e-13!83;UBERON:0003059!1.08e-13!83;UBERON:0007282!1.08e-13!83;UBERON:0009618!1.08e-13!83;UBERON:0007285!1.08e-13!83;UBERON:0004290!4.88e-11!70;UBERON:0001134!7.84e-10!61;UBERON:0002036!7.84e-10!61;UBERON:0003082!7.84e-10!61;UBERON:0000486!1.50e-09!82;UBERON:0002385!5.66e-09!63;UBERON:0001015!5.66e-09!63;UBERON:0000383!5.66e-09!63;UBERON:0002199!4.18e-08!45;UBERON:0002416!4.18e-08!45;UBERON:0003102!6.26e-08!95;UBERON:0002097!1.28e-07!40;UBERON:0000475!1.56e-07!365;UBERON:0005256!3.56e-07!143|ontology_enrichment_uberon_v019=UBERON:0004457;1.36e-09;9!UBERON:0000042;1.36e-09;9!UBERON:0003688;2.72e-09;6!UBERON:0002358;2.72e-09;6!UBERON:0003684;2.72e-09;6!UBERON:0001178;2.72e-09;6!UBERON:0002097;3.60e-09;41!UBERON:0002384;5.86e-09;198!UBERON:0002199;2.12e-08;46!UBERON:0002416;2.12e-08;46|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.25e-12,371;UBERON:0002199,3.74e-12,46;UBERON:0002416,3.74e-12,46;UBERON:0002097,4.28e-12,41;UBERON:0003102,1.37e-11,99;UBERON:0003688,2.62e-09,6;UBERON:0002358,2.62e-09,6;UBERON:0003684,2.62e-09,6;UBERON:0001178,2.62e-09,6;UBERON:0007524,9.18e-07,73|phase1_expression=17.4411244099734,7.27941781229343,10.7125347112938,22.0161256376887,6.70441641640932,4.36169262050184,7.59899634504932,0,0.261185628199839,0,0,0.218441372130172,0,0.866364470720326,0.662794751455832,2.01697543935533,0.602694528023977,0.730310090387373,0,0.123121058076788,0.612002073732759,0,0.572471974262113,0.273748850145768,0.251085279189606,0,0.0821005894499457,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485168122375632,0,0,0,0,0,0,0,0,0,0.376484679085209,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0.661044872784862,0,0,0,0,0,1.12101712596307,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0.301150238155546,0.255973222308837,0,0,0,0,0,0.289648807765598,0,1.34140171940727,0.895037932904712,8.31310050484502,8.02140657017423,7.67686550492366,3.9764297352555,1.94653948121054,0.0945348171640679,0.886917589850256,0.351339142772504,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0.33472061276467,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0,11.9273268406876,6.45815609489357,14.6974190702673,11.4734648299525,3.54668382198357,1.68203280042692,1.06748995729705,0.74000264525148,1.8672662123986,0.538842688278752,0.163461903113459,1.21085942115945,0,0.234321431833797,0,1.1409436430889,0.896692083310806,0.939475989150119,0.809364721840658,0.842704840213491,5.30800845262722,1.35117749042945,1.03325781175765,3.56400857184616,2.96720315134268,0,1.43723628363248,0.673344455816265,0.750711119231785,4.71008996323111,3.07284334616587,11.3400484445637,1.20190447125277,1.36118619792025,13.4542226766646,5.33893472046419,5.29829752898905,5.70173082560364,2.98852334791473,23.9605702242435,11.1670113798954,20.4219362011932,13.251432701923,9.59248342127635,10.4016385465798,10.9919318636792,19.1705179958972,14.7098063412355,5.76506013855658,0.193260853163297,0,0,0,0,0,0,0,0,1.56449532329816,5.78916844373597,0,5.57241513638375,3.60939740834793,0.473227200159376,0.337169380156203,0,0.330881918197182,0,0,0,0.196221465125346,0,0,1.40241773803446,0,0,0,0,0,0,0.368965315629341,0.514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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4008 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6646 | |||
|TSSclassifier=S | |||
|UniProt=E9PMP7 | |||
|association_with_transcript=301bp_to_ENST00000377499,uc001vjt.1_5end | |||
|coexpression_cluster_id=C1189 | |||
|description=CAGE_peak_3_at_LMO7_5end | |||
|id=chr13:76210760..76210803,+ | |||
|ontology_enrichment_celltype=CL:0000055!7.36e-35!180;CL:0000057!3.26e-21!75;CL:0002620!3.26e-12!23;CL:0000680!8.50e-12!57;CL:0000056!8.50e-12!57;CL:0000355!8.50e-12!57;CL:0000192!2.51e-10!42;CL:0000514!2.51e-10!42;CL:0000187!3.01e-10!54;CL:0000048!3.26e-09!430;CL:0000183!4.42e-09!59;CL:0000359!7.04e-09!32;CL:0000723!1.22e-08!436;CL:0000393!1.81e-08!60;CL:0000211!1.81e-08!60;CL:0000034!8.61e-08!444 | |||
|ontology_enrichment_celltype_v019=CL:0002620;3.74e-15;23!CL:0000057;3.42e-10;73!CL:0002320;3.31e-09;188!CL:0000499;2.38e-08;28!CL:0002334;4.07e-08;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.26e-27,76;CL:0000048,7.82e-18,427;CL:0000723,4.40e-17,433;CL:0000034,1.31e-16,441;CL:0002620,5.77e-15,23;CL:0002320,9.12e-12,361;CL:0000134,1.26e-11,354;CL:0000219,5.97e-10,386;CL:0000499,2.23e-08,28;CL:0002334,3.71e-08,12;CL:0000680,2.61e-07,58;CL:0000056,2.61e-07,58;CL:0000355,2.61e-07,58;CL:0000192,3.17e-07,43;CL:0000514,3.17e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;7.98e-08;14!DOID:17;8.43e-07;5!DOID:450;8.43e-07;5!DOID:66;8.43e-07;5!DOID:423;8.43e-07;5!DOID:0080000;8.43e-07;5!DOID:11722;8.43e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,5.97e-08,14;DOID:17,7.93e-07,5;DOID:450,7.93e-07,5;DOID:66,7.93e-07,5;DOID:423,7.93e-07,5;DOID:0080000,7.93e-07,5;DOID:11722,7.93e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.08e-13!83;UBERON:0002329!1.08e-13!83;UBERON:0003077!1.08e-13!83;UBERON:0003059!1.08e-13!83;UBERON:0007282!1.08e-13!83;UBERON:0009618!1.08e-13!83;UBERON:0007285!1.08e-13!83;UBERON:0004290!4.88e-11!70;UBERON:0001134!7.84e-10!61;UBERON:0002036!7.84e-10!61;UBERON:0003082!7.84e-10!61;UBERON:0000486!1.50e-09!82;UBERON:0002385!5.66e-09!63;UBERON:0001015!5.66e-09!63;UBERON:0000383!5.66e-09!63;UBERON:0002199!4.18e-08!45;UBERON:0002416!4.18e-08!45;UBERON:0003102!6.26e-08!95;UBERON:0002097!1.28e-07!40;UBERON:0000475!1.56e-07!365;UBERON:0005256!3.56e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;1.36e-09;9!UBERON:0000042;1.36e-09;9!UBERON:0003688;2.72e-09;6!UBERON:0002358;2.72e-09;6!UBERON:0003684;2.72e-09;6!UBERON:0001178;2.72e-09;6!UBERON:0002097;3.60e-09;41!UBERON:0002384;5.86e-09;198!UBERON:0002199;2.12e-08;46!UBERON:0002416;2.12e-08;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.25e-12,371;UBERON:0002199,3.74e-12,46;UBERON:0002416,3.74e-12,46;UBERON:0002097,4.28e-12,41;UBERON:0003102,1.37e-11,99;UBERON:0003688,2.62e-09,6;UBERON:0002358,2.62e-09,6;UBERON:0003684,2.62e-09,6;UBERON:0001178,2.62e-09,6;UBERON:0007524,9.18e-07,73 | |||
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| |||
|short_description=p3@LMO7 | |||
}} |
Revision as of 02:47, 11 September 2013
Short description: | p3@LMO7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_LMO7_5end |
Coexpression cluster: | C1189_Preadipocyte_Fibroblast_Ewing_mesodermal_Adipocyte_Smooth_osteoclastoma |
Association with transcript: | 301bp_to_ENST00000377499, uc001vjt.1_5end |
EntrezGene: | LMO7 |
HGNC: | 6646 |
UniProt: | E9PMP7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.26e-27 | 76 |
multi fate stem cell | 7.82e-18 | 427 |
somatic stem cell | 4.40e-17 | 433 |
stem cell | 1.31e-16 | 441 |
skin fibroblast | 5.77e-15 | 23 |
connective tissue cell | 9.12e-12 | 361 |
mesenchymal cell | 1.26e-11 | 354 |
motile cell | 5.97e-10 | 386 |
stromal cell | 2.23e-08 | 28 |
preadipocyte | 3.71e-08 | 12 |
muscle precursor cell | 2.61e-07 | 58 |
myoblast | 2.61e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.61e-07 | 58 |
smooth muscle cell | 3.17e-07 | 43 |
smooth muscle myoblast | 3.17e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 2.25e-12 | 371 |
integument | 3.74e-12 | 46 |
integumental system | 3.74e-12 | 46 |
skin of body | 4.28e-12 | 41 |
surface structure | 1.37e-11 | 99 |
omentum | 2.62e-09 | 6 |
peritoneum | 2.62e-09 | 6 |
abdominal cavity | 2.62e-09 | 6 |
visceral peritoneum | 2.62e-09 | 6 |
dense mesenchyme tissue | 9.18e-07 | 73 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 5.97e-08 | 14 |
musculoskeletal system disease | 7.93e-07 | 5 |
myotonic disease | 7.93e-07 | 5 |
muscle tissue disease | 7.93e-07 | 5 |
myopathy | 7.93e-07 | 5 |
muscular disease | 7.93e-07 | 5 |
myotonic dystrophy | 7.93e-07 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.