FFCP PHASE1:Hg19::chr16:2255447..2255492,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=64223|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=24825|TSSclassifier=S|UniProt=Q9BVC4|association_with_transcript=0bp_to_uc002coy.2,uc002coz.2,uc002cpa.2,uc002cpb.2,uc002cpc.2,uc002cpd.2,uc002cpe.2,uc010uvx.1_5end|coexpression_cluster_id=C1419|description=CAGE_peak_1_at_MLST8_5end|id=chr16:2255447..2255492,+|ontology_enrichment_celltype=CL:0002321!2.84e-12!248;CL:0000220!5.79e-12!246;CL:0000066!3.13e-09!254;CL:0000222!1.77e-08!119;CL:0000183!3.40e-08!59;CL:0000221!2.61e-07!71;CL:0000133!4.61e-07!59;CL:0000055!7.24e-07!180;CL:0000393!7.59e-07!60;CL:0000211!7.59e-07!60|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=CL:0002321,1.66e-12,250;CL:0000066,2.89e-09,253;CL:0000222,1.10e-08,121;CL:0000221,2.15e-07,72;CL:0000133,4.61e-07,59;CL:0000393,9.64e-07,61;CL:0000211,9.64e-07,61|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000119!3.05e-11!312;UBERON:0000483!9.71e-11!309;UBERON:0000481!4.67e-08!347;UBERON:0004290!5.93e-08!70;UBERON:0000475!1.92e-07!365;UBERON:0005085!2.11e-07!29;UBERON:0000064!2.31e-07!219;UBERON:0000486!2.36e-07!82;UBERON:0000914!4.42e-07!83;UBERON:0002329!4.42e-07!83;UBERON:0003077!4.42e-07!83;UBERON:0003059!4.42e-07!83;UBERON:0007282!4.42e-07!83;UBERON:0009618!4.42e-07!83;UBERON:0007285!4.42e-07!83|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0000119,6.34e-12,309;UBERON:0000483,2.09e-11,306;UBERON:0007503,2.73e-10,78;UBERON:0007524,5.74e-08,73;UBERON:0002329,7.58e-08,71;UBERON:0003059,7.58e-08,71;UBERON:0007282,7.58e-08,71;UBERON:0004290,7.58e-08,71;UBERON:0009618,7.58e-08,71;UBERON:0003077,8.21e-08,72;UBERON:0007285,8.21e-08,72;UBERON:0000486,2.86e-07,83;UBERON:0005085,3.51e-07,31|phase1_expression=21.6197271331962,24.835660771354,18.1831181283803,25.0183245882826,28.1585489489191,30.5318483435129,37.9949817252466,27.1639545573537,32.38701789678,30.7167420626886,121.417403227202,43.2513916817741,41.1476486036388,28.0949621219306,45.7328378504524,28.9099812974263,33.7508935693427,38.7064347905308,24.3966399395254,57.3744130637832,72.8282467741983,51.0931196009283,26.0474748289262,30.2492479411074,29.6280629443735,18.7212844082481,17.6516267317383,17.3163718890094,12.5876568591649,17.2723229143746,22.7579701274632,82.7479102031034,100.903982790714,50.6562993928499,29.5924706216752,18.6241694558522,19.3776289960999,18.281848481552,16.0435557976113,15.8417935622572,11.4196891862361,19.7575136271578,16.9999874638563,10.6140714309082,12.4699061417307,12.3717871205786,10.9241647345672,15.2132118568076,13.6270803193846,9.20615655430881,8.19714260893122,8.74984250587765,7.92915065694223,16.7826017731795,20.3139729891513,13.1769637679823,14.191119803008,11.9103446755895,7.03992952453076,7.06043859567406,11.5080682643827,10.5552416059749,9.57425556583833,12.3605177654481,4.93355705668593,11.9150897185139,7.4738669879469,10.5524439407832,10.9511412868242,13.031330682307,7.87019353423379,10.3117738076518,6.32924774881769,21.3367839175061,26.1503288957004,20.5465472598208,22.016411704713,24.629010426007,17.0369121898905,16.8157518807337,21.8808344918999,20.2757210678744,3.51992488922645,11.4689108365048,16.9006758234075,14.0820973446947,13.2130675721884,11.4950487990897,12.5598525829124,11.4486450544244,26.1837965790346,32.2980454154016,24.4654866000146,21.1474125726441,15.694239763483,26.0750243927326,15.1466522987651,22.7946242394516,21.382555895949,16.5514630436771,16.9479578649467,17.9910166179199,23.3792074089494,18.3827253860536,14.7302953737419,17.9442454612733,16.519035689666,19.726063237754,21.1996736522602,19.4036727432338,30.3985019564433,24.6332622874795,22.094697911147,20.3331029348182,26.1338809512442,18.2428041743082,18.0113631992903,15.806862492201,16.4462799812677,16.565401544853,18.8814201618361,9.50452044448374,22.2851176235104,22.5256435631776,14.9916871862815,12.5491943583329,17.243687935342,14.314078768956,14.9766509638764,19.1168213125295,9.75227465255847,27.4987352478491,24.8053369976449,42.6498199813788,24.0642197105227,25.6378338560658,27.8350081467885,14.5990461090791,27.4150969775797,28.8248216701333,30.1273314927422,35.2988608466336,58.6515414150993,46.7188397908381,14.2800853208061,15.3234168823355,19.677778156792,15.9788718284579,15.4438625910635,15.2297575545122,34.1871340670733,26.6672724482899,38.532595678443,32.7878606315926,38.1744486951014,40.71747020713,49.3228121026873,19.3812569376997,17.4325468716488,15.3971481871748,51.5621525899708,34.2122447573331,45.3955427039595,30.1483725883612,31.5955359673886,20.0924388639179,23.3510547531217,22.4096846161811,53.6608231130591,42.7169546805658,32.9763139074733,0,0,61.0531672999548,27.3334573432425,21.0206649363202,14.5650098894541,15.2023408996871,24.4721183716866,36.44404400925,40.5646183772879,52.0468527160208,26.4529380089801,25.5950276932407,35.9616186849609,37.9907143388778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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=64223 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24825 | |||
|TSSclassifier=S | |||
|UniProt=Q9BVC4 | |||
|association_with_transcript=0bp_to_uc002coy.2,uc002coz.2,uc002cpa.2,uc002cpb.2,uc002cpc.2,uc002cpd.2,uc002cpe.2,uc010uvx.1_5end | |||
|coexpression_cluster_id=C1419 | |||
|description=CAGE_peak_1_at_MLST8_5end | |||
|id=chr16:2255447..2255492,+ | |||
|ontology_enrichment_celltype=CL:0002321!2.84e-12!248;CL:0000220!5.79e-12!246;CL:0000066!3.13e-09!254;CL:0000222!1.77e-08!119;CL:0000183!3.40e-08!59;CL:0000221!2.61e-07!71;CL:0000133!4.61e-07!59;CL:0000055!7.24e-07!180;CL:0000393!7.59e-07!60;CL:0000211!7.59e-07!60 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.66e-12,250;CL:0000066,2.89e-09,253;CL:0000222,1.10e-08,121;CL:0000221,2.15e-07,72;CL:0000133,4.61e-07,59;CL:0000393,9.64e-07,61;CL:0000211,9.64e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!3.05e-11!312;UBERON:0000483!9.71e-11!309;UBERON:0000481!4.67e-08!347;UBERON:0004290!5.93e-08!70;UBERON:0000475!1.92e-07!365;UBERON:0005085!2.11e-07!29;UBERON:0000064!2.31e-07!219;UBERON:0000486!2.36e-07!82;UBERON:0000914!4.42e-07!83;UBERON:0002329!4.42e-07!83;UBERON:0003077!4.42e-07!83;UBERON:0003059!4.42e-07!83;UBERON:0007282!4.42e-07!83;UBERON:0009618!4.42e-07!83;UBERON:0007285!4.42e-07!83 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,6.34e-12,309;UBERON:0000483,2.09e-11,306;UBERON:0007503,2.73e-10,78;UBERON:0007524,5.74e-08,73;UBERON:0002329,7.58e-08,71;UBERON:0003059,7.58e-08,71;UBERON:0007282,7.58e-08,71;UBERON:0004290,7.58e-08,71;UBERON:0009618,7.58e-08,71;UBERON:0003077,8.21e-08,72;UBERON:0007285,8.21e-08,72;UBERON:0000486,2.86e-07,83;UBERON:0005085,3.51e-07,31 | |||
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| |||
|short_description=p1@MLST8 | |||
}} |
Revision as of 09:41, 11 September 2013
Short description: | p1@MLST8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_MLST8_5end |
Coexpression cluster: | C1419_Mesenchymal_Alveolar_Renal_Bronchial_Keratocytes_Trabecular_Pericytes |
Association with transcript: | 0bp_to_uc002coy.2, uc002coz.2, uc002cpa.2, uc002cpb.2, uc002cpc.2, uc002cpd.2, uc002cpe.2, uc010uvx.1_5end |
EntrezGene: | MLST8 |
HGNC: | 24825 |
UniProt: | Q9BVC4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.66e-12 | 250 |
epithelial cell | 2.89e-09 | 253 |
mesodermal cell | 1.10e-08 | 121 |
ectodermal cell | 2.15e-07 | 72 |
neurectodermal cell | 4.61e-07 | 59 |
electrically responsive cell | 9.64e-07 | 61 |
electrically active cell | 9.64e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
cell layer | 6.34e-12 | 309 |
epithelium | 2.09e-11 | 306 |
epithelial vesicle | 2.73e-10 | 78 |
dense mesenchyme tissue | 5.74e-08 | 73 |
somite | 7.58e-08 | 71 |
presomitic mesoderm | 7.58e-08 | 71 |
presumptive segmental plate | 7.58e-08 | 71 |
dermomyotome | 7.58e-08 | 71 |
trunk paraxial mesoderm | 7.58e-08 | 71 |
paraxial mesoderm | 8.21e-08 | 72 |
presumptive paraxial mesoderm | 8.21e-08 | 72 |
multilaminar epithelium | 2.86e-07 | 83 |
ectodermal placode | 3.51e-07 | 31 |
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