FFCP PHASE1:Hg19::chr17:7983403..7983427,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=NA|TSSclassifier=S|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr17:7983403..7983427,-|id=chr17:7983403..7983427,-|ontology_enrichment_celltype=CL:0000542!7.48e-13!53;CL:0000051!7.48e-13!53;CL:0000838!3.08e-12!52;CL:0000084!2.59e-08!25;CL:0000827!2.59e-08!25;CL:0000080!8.31e-07!6|ontology_enrichment_celltype_v019=CL:0000307;1.26e-08;3|ontology_enrichment_celltype_v019_2=CL:0000068,1.40e-08,3;CL:0000069,1.40e-08,3;CL:0000307,1.40e-08,3;CL:0000377,1.40e-08,3|ontology_enrichment_development_v019=UBERON:0010122;1.91e-44;2!CL:0000377;1.26e-08;3|ontology_enrichment_disease=DOID:171!6.29e-09!10;DOID:0050687!2.74e-08!143|ontology_enrichment_disease_v019=DOID:3371;1.33e-23;1!DOID:4549;1.33e-23;1!DOID:5861;1.33e-23;1!DOID:6496;1.33e-23;1|ontology_enrichment_disease_v019_2=DOID:3371,1.67e-23,1;DOID:4549,1.67e-23,1;DOID:5861,1.67e-23,1;DOID:6496,1.67e-23,1|ontology_enrichment_uberon=UBERON:0000073!7.16e-11!94;UBERON:0001016!7.16e-11!94;UBERON:0002346!6.86e-10!90;UBERON:0005743!7.27e-10!86;UBERON:0001049!1.58e-09!57;UBERON:0005068!1.58e-09!57;UBERON:0006241!1.58e-09!57;UBERON:0007135!1.58e-09!57;UBERON:0001017!2.29e-09!82;UBERON:0001869!2.77e-09!32;UBERON:0002780!4.49e-09!41;UBERON:0001890!4.49e-09!41;UBERON:0006240!4.49e-09!41;UBERON:0003080!1.02e-08!42;UBERON:0001893!1.89e-08!34;UBERON:0002616!3.56e-08!59;UBERON:0002791!6.67e-08!33;UBERON:0003075!7.57e-08!86;UBERON:0007284!7.57e-08!86;UBERON:0000955!7.78e-08!69;UBERON:0006238!7.78e-08!69;UBERON:0002020!1.55e-07!34;UBERON:0003528!1.55e-07!34;UBERON:0000369!4.37e-07!4;UBERON:0002435!4.37e-07!4;UBERON:0000204!4.37e-07!4;UBERON:0010082!4.37e-07!4;UBERON:0003056!9.84e-07!61|ontology_enrichment_uberon_v019=UBERON:0005383;3.76e-66;3!UBERON:0005382;3.76e-66;3!UBERON:0000369;7.21e-50;4!UBERON:0002435;7.21e-50;4!UBERON:0000204;7.21e-50;4!UBERON:0001873;1.91e-44;2!UBERON:0009663;6.82e-29;7!UBERON:0001874;1.33e-23;1!UBERON:0002420;1.17e-22;9!UBERON:0000125;1.17e-22;9!UBERON:0007245;1.17e-22;9!UBERON:0002308;1.17e-22;9!UBERON:0010009;1.17e-22;9!UBERON:0010011;1.17e-22;9!UBERON:0000454;1.17e-22;9!UBERON:0002418;8.96e-09;3!UBERON:0004755;8.96e-09;3!UBERON:0002369;1.26e-08;3!UBERON:0001235;1.26e-08;3!UBERON:0006858;1.26e-08;3!UBERON:0002791;6.42e-07;32|ontology_enrichment_uberon_v019_2=UBERON:0005383,3.76e-66,3;UBERON:0005382,3.76e-66,3;UBERON:0000369,7.22e-50,4;UBERON:0002435,7.22e-50,4;UBERON:0000204,7.22e-50,4;UBERON:0010082,7.22e-50,4;UBERON:0001873,1.91e-44,2;UBERON:0010122,1.91e-44,2;UBERON:0009663,6.83e-29,7;UBERON:0001874,1.34e-23,1;UBERON:0002420,1.17e-22,9;UBERON:0000125,1.17e-22,9;UBERON:0007245,1.17e-22,9;UBERON:0002308,1.17e-22,9;UBERON:0010009,1.17e-22,9;UBERON:0010011,1.17e-22,9;UBERON:0000454,1.17e-22,9;UBERON:0002418,9.66e-09,3;UBERON:0004755,9.66e-09,3;UBERON:0002369,1.30e-08,3;UBERON:0001235,1.30e-08,3;UBERON:0006858,1.30e-08,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0.236132343941038,0,0,0,0,0,0,0,0.710846162437108,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0.400395987036012,0,0,0,0.569212969109448,0.587237189370939,0.382273228125229,0,0,0,0.196709770113833,0.393010762749165,0,0,0.32592226663359,0.946895611469467,0,0,0,0.221533894583621,0,0,0,0,0.276350017785848,0,0.14828656316206,0.267540828089713,0,0,0.766440987203842,0,0.253019692019503,0.637130828648193,0,0.950452044448374,0.301150238155546,0,0,0.236777252044017,0,0.201606743224732,0,0.289648807765598,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0,0.252320850875628,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0.862510299438069,0.256686072559497,0,0,0.773288812777695,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460404944679482,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08890984861323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0.185803175125719,0,0,0.318852545457645,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,1.33496573924465,0.222886768554957,0,0,0,0,0,0.422008249231538,0,0.16480387422676,0.422250816255987,0.19924798825107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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |||
|TSSclassifier=S | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr17:7983403..7983427,- | |||
|id=chr17:7983403..7983427,- | |||
|ontology_enrichment_celltype=CL:0000542!7.48e-13!53;CL:0000051!7.48e-13!53;CL:0000838!3.08e-12!52;CL:0000084!2.59e-08!25;CL:0000827!2.59e-08!25;CL:0000080!8.31e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000307;1.26e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000068,1.40e-08,3;CL:0000069,1.40e-08,3;CL:0000307,1.40e-08,3;CL:0000377,1.40e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0010122;1.91e-44;2!CL:0000377;1.26e-08;3 | |||
|ontology_enrichment_disease=DOID:171!6.29e-09!10;DOID:0050687!2.74e-08!143 | |||
|ontology_enrichment_disease_v019=DOID:3371;1.33e-23;1!DOID:4549;1.33e-23;1!DOID:5861;1.33e-23;1!DOID:6496;1.33e-23;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,1.67e-23,1;DOID:4549,1.67e-23,1;DOID:5861,1.67e-23,1;DOID:6496,1.67e-23,1 | |||
|ontology_enrichment_uberon=UBERON:0000073!7.16e-11!94;UBERON:0001016!7.16e-11!94;UBERON:0002346!6.86e-10!90;UBERON:0005743!7.27e-10!86;UBERON:0001049!1.58e-09!57;UBERON:0005068!1.58e-09!57;UBERON:0006241!1.58e-09!57;UBERON:0007135!1.58e-09!57;UBERON:0001017!2.29e-09!82;UBERON:0001869!2.77e-09!32;UBERON:0002780!4.49e-09!41;UBERON:0001890!4.49e-09!41;UBERON:0006240!4.49e-09!41;UBERON:0003080!1.02e-08!42;UBERON:0001893!1.89e-08!34;UBERON:0002616!3.56e-08!59;UBERON:0002791!6.67e-08!33;UBERON:0003075!7.57e-08!86;UBERON:0007284!7.57e-08!86;UBERON:0000955!7.78e-08!69;UBERON:0006238!7.78e-08!69;UBERON:0002020!1.55e-07!34;UBERON:0003528!1.55e-07!34;UBERON:0000369!4.37e-07!4;UBERON:0002435!4.37e-07!4;UBERON:0000204!4.37e-07!4;UBERON:0010082!4.37e-07!4;UBERON:0003056!9.84e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0005383;3.76e-66;3!UBERON:0005382;3.76e-66;3!UBERON:0000369;7.21e-50;4!UBERON:0002435;7.21e-50;4!UBERON:0000204;7.21e-50;4!UBERON:0001873;1.91e-44;2!UBERON:0009663;6.82e-29;7!UBERON:0001874;1.33e-23;1!UBERON:0002420;1.17e-22;9!UBERON:0000125;1.17e-22;9!UBERON:0007245;1.17e-22;9!UBERON:0002308;1.17e-22;9!UBERON:0010009;1.17e-22;9!UBERON:0010011;1.17e-22;9!UBERON:0000454;1.17e-22;9!UBERON:0002418;8.96e-09;3!UBERON:0004755;8.96e-09;3!UBERON:0002369;1.26e-08;3!UBERON:0001235;1.26e-08;3!UBERON:0006858;1.26e-08;3!UBERON:0002791;6.42e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005383,3.76e-66,3;UBERON:0005382,3.76e-66,3;UBERON:0000369,7.22e-50,4;UBERON:0002435,7.22e-50,4;UBERON:0000204,7.22e-50,4;UBERON:0010082,7.22e-50,4;UBERON:0001873,1.91e-44,2;UBERON:0010122,1.91e-44,2;UBERON:0009663,6.83e-29,7;UBERON:0001874,1.34e-23,1;UBERON:0002420,1.17e-22,9;UBERON:0000125,1.17e-22,9;UBERON:0007245,1.17e-22,9;UBERON:0002308,1.17e-22,9;UBERON:0010009,1.17e-22,9;UBERON:0010011,1.17e-22,9;UBERON:0000454,1.17e-22,9;UBERON:0002418,9.66e-09,3;UBERON:0004755,9.66e-09,3;UBERON:0002369,1.30e-08,3;UBERON:0001235,1.30e-08,3;UBERON:0006858,1.30e-08,3 | |||
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|short_description=p@chr17:7983403..7983427,- | |||
}} |
Revision as of 16:29, 11 September 2013
Short description: | p@chr17:7983403..7983427, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr17:7983403..7983427, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
duct epithelial cell | 1.40e-08 | 3 |
branched duct epithelial cell | 1.40e-08 | 3 |
tracheal epithelial cell | 1.40e-08 | 3 |
tracheoblast | 1.40e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
caudate-putamen | 3.76e-66 | 3 |
dorsal striatum | 3.76e-66 | 3 |
corpus striatum | 7.22e-50 | 4 |
striatum | 7.22e-50 | 4 |
ventral part of telencephalon | 7.22e-50 | 4 |
future corpus striatum | 7.22e-50 | 4 |
caudate nucleus | 1.91e-44 | 2 |
future caudate nucleus | 1.91e-44 | 2 |
telencephalic nucleus | 6.83e-29 | 7 |
putamen | 1.34e-23 | 1 |
basal ganglion | 1.17e-22 | 9 |
neural nucleus | 1.17e-22 | 9 |
nuclear complex of neuraxis | 1.17e-22 | 9 |
nucleus of brain | 1.17e-22 | 9 |
aggregate regional part of brain | 1.17e-22 | 9 |
collection of basal ganglia | 1.17e-22 | 9 |
cerebral subcortex | 1.17e-22 | 9 |
cartilage tissue | 9.66e-09 | 3 |
skeletal tissue | 9.66e-09 | 3 |
adrenal gland | 1.30e-08 | 3 |
adrenal cortex | 1.30e-08 | 3 |
adrenal/interrenal gland | 1.30e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 1.67e-23 | 1 |
extraosseous chondrosarcoma | 1.67e-23 | 1 |
myxoid chondrosarcoma | 1.67e-23 | 1 |
extraskeletal myxoid chondrosarcoma | 1.67e-23 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.