FFCP PHASE1:Hg19::chr19:12404803..12404810,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C8|description=CAGE_peak_at_chr19:12404803..12404810,+|id=chr19:12404803..12404810,+|ontology_enrichment_celltype=CL:0000542!5.43e-12!53;CL:0000051!5.43e-12!53;CL:0000838!2.47e-11!52;CL:0000037!5.76e-11!172;CL:0000566!5.76e-11!172;CL:0000988!2.28e-10!182;CL:0000738!1.08e-09!140;CL:0002032!5.24e-09!165;CL:0000837!5.24e-09!165|ontology_enrichment_celltype_v019=CL:0000623;3.69e-18;3!CL:0000542;2.62e-09;53!CL:0000767;4.71e-08;3!CL:0000084;1.26e-07;25|ontology_enrichment_celltype_v019_2=CL:0000623,3.72e-18,3;CL:0000825,3.72e-18,3;CL:0000838,1.37e-15,52;CL:0000542,3.03e-15,53;CL:0000051,3.03e-15,53;CL:0000037,7.43e-15,168;CL:0000738,1.32e-14,136;CL:0000988,7.79e-14,177;CL:0002032,1.18e-11,161;CL:0000837,1.18e-11,161;CL:0002031,1.23e-09,120;CL:0002087,8.41e-09,115;CL:0000767,7.49e-08,3;CL:0000084,1.43e-07,25;CL:0000827,1.43e-07,25;CL:0000946,7.82e-07,1;CL:0000786,7.82e-07,1;CL:0000980,7.82e-07,1;CL:0000511,8.75e-07,1;CL:0002625,8.75e-07,1;CL:0000216,8.75e-07,1|ontology_enrichment_development_v019=CL:0000051;2.62e-09;53|ontology_enrichment_disease=DOID:305!2.13e-10!106;DOID:162!3.50e-09!235;DOID:14566!1.33e-08!239;DOID:0050687!9.22e-08!143|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0004913;5.25e-07;1!UBERON:0003703;5.25e-07;1!UBERON:0001174;5.25e-07;1!UBERON:0004914;5.25e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0004913,5.89e-07,1;UBERON:0003703,5.89e-07,1;UBERON:0001174,5.89e-07,1;UBERON:0004914,5.89e-07,1;UBERON:0001136,8.75e-07,1;UBERON:0001343,8.75e-07,1;UBERON:0004910,8.75e-07,1;UBERON:0005154,8.75e-07,1;UBERON:0005295,8.75e-07,1;UBERON:0004813,8.75e-07,1;UBERON:0005297,8.75e-07,1;UBERON:0005294,8.75e-07,1;UBERON:0010141,8.75e-07,1;UBERON:0005891,8.75e-07,1|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382067028739756,0.738905305049512,0.550975469195755,1.18009283054671,1.15148819429164,0.928896739896456,0,0,0,0.154934401160603,0.284338464974843,1.17440175733939,1.10799081706375,0.601633342410425,1.95309783644267,0,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,2.84606484554724,1.76171156811282,0.764546456250458,1.32171328579026,0.560508562981536,0,0.196709770113833,0.786021525498329,3.90642848099067,0.167186495390678,0,0,0,0,0.294605907474837,0,0.270803863765016,0.128091319725675,0,0,0,0.289803085735052,0.14828656316206,0,0,0,0,0,0.506039384039006,0.637130828648193,0,0,0,0,0,0,0,7.4594494993151,2.94184215361858,4.63438092424957,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.196468613246569,0,0,0,0,0,0.476981248610684,1.14398982156026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0.290633938513962,0,0,0,1.86595303986695,0.144119953416961,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0.672510863961164,6.89607660706745,3.88129634747131,6.67383788654692,0,0,0.773288812777695,0,0,1.49801404789436,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03384013061444,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.725156697549733,0.200506470303285,0,0,0,0,0.451199612907412,0.0770153371044148,0,0,0,0,0,0.215915916102139,0,0,0,0.254876273045038,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0,0,0.576570202095319,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371606350251437,0,0.142283686696828,0.159426272728822,0,0,0.423347165447766,0,0.280797178113459,0.228234679033192,0,0,0.169291777801603,0,0,0,0.343505344755765,0,0,0,0,0.278406173895242,1.23087398947712,0,0,0,0.18714054040822,0,0,2.22886768554957,0.568272293612826,0,0,0.307160702099232,0,0,0,0,0.63337622438398,0,0,0.503865495708552,0,0.492339221844278,0.311039587661807,0.449341755736634,0.179021174675609,0,0,2.3948309234694,0,0,0,0,1.82299432759663,0.437299999980979,0,0,0.254253650292766,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0.41827123283581,0.0769502585037971,0,0,0.179515288819544,0.108647371922008,0.31900115973192,0.0915975934018623,0,1.02193298195737,0,0.166211681900156,0,0,0,0,0.158936578980379,0.210998064528027,0.652931232636591,0,0,0,0.176915129006678,0,0,0.123563938946503,0.104421949505455,0,0,0,0,0,0,0,0,0,0.126373159256976,0.450970258243478,0.103688191397247,0,0,0,0,0.284609546029793,0,0,0.0979923974143777,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C8 | |||
|description=CAGE_peak_at_chr19:12404803..12404810,+ | |||
|id=chr19:12404803..12404810,+ | |||
|ontology_enrichment_celltype=CL:0000542!5.43e-12!53;CL:0000051!5.43e-12!53;CL:0000838!2.47e-11!52;CL:0000037!5.76e-11!172;CL:0000566!5.76e-11!172;CL:0000988!2.28e-10!182;CL:0000738!1.08e-09!140;CL:0002032!5.24e-09!165;CL:0000837!5.24e-09!165 | |||
|ontology_enrichment_celltype_v019=CL:0000623;3.69e-18;3!CL:0000542;2.62e-09;53!CL:0000767;4.71e-08;3!CL:0000084;1.26e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000623,3.72e-18,3;CL:0000825,3.72e-18,3;CL:0000838,1.37e-15,52;CL:0000542,3.03e-15,53;CL:0000051,3.03e-15,53;CL:0000037,7.43e-15,168;CL:0000738,1.32e-14,136;CL:0000988,7.79e-14,177;CL:0002032,1.18e-11,161;CL:0000837,1.18e-11,161;CL:0002031,1.23e-09,120;CL:0002087,8.41e-09,115;CL:0000767,7.49e-08,3;CL:0000084,1.43e-07,25;CL:0000827,1.43e-07,25;CL:0000946,7.82e-07,1;CL:0000786,7.82e-07,1;CL:0000980,7.82e-07,1;CL:0000511,8.75e-07,1;CL:0002625,8.75e-07,1;CL:0000216,8.75e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000051;2.62e-09;53 | |||
|ontology_enrichment_disease=DOID:305!2.13e-10!106;DOID:162!3.50e-09!235;DOID:14566!1.33e-08!239;DOID:0050687!9.22e-08!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0004913;5.25e-07;1!UBERON:0003703;5.25e-07;1!UBERON:0001174;5.25e-07;1!UBERON:0004914;5.25e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004913,5.89e-07,1;UBERON:0003703,5.89e-07,1;UBERON:0001174,5.89e-07,1;UBERON:0004914,5.89e-07,1;UBERON:0001136,8.75e-07,1;UBERON:0001343,8.75e-07,1;UBERON:0004910,8.75e-07,1;UBERON:0005154,8.75e-07,1;UBERON:0005295,8.75e-07,1;UBERON:0004813,8.75e-07,1;UBERON:0005297,8.75e-07,1;UBERON:0005294,8.75e-07,1;UBERON:0010141,8.75e-07,1;UBERON:0005891,8.75e-07,1 | |||
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|short_description=p@chr19:12404803..12404810,+ | |||
}} |
Revision as of 18:45, 11 September 2013
Short description: | p@chr19:12404803..12404810, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:12404803..12404810, + |
Coexpression cluster: | C8_Natural_CD8_Basophils_CD4_CD14_Peripheral_CD34 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
natural killer cell | 3.72e-18 | 3 |
pro-NK cell | 3.72e-18 | 3 |
lymphoid lineage restricted progenitor cell | 1.37e-15 | 52 |
lymphocyte | 3.03e-15 | 53 |
common lymphoid progenitor | 3.03e-15 | 53 |
hematopoietic stem cell | 7.43e-15 | 168 |
leukocyte | 1.32e-14 | 136 |
hematopoietic cell | 7.79e-14 | 177 |
hematopoietic oligopotent progenitor cell | 1.18e-11 | 161 |
hematopoietic multipotent progenitor cell | 1.18e-11 | 161 |
hematopoietic lineage restricted progenitor cell | 1.23e-09 | 120 |
nongranular leukocyte | 8.41e-09 | 115 |
basophil | 7.49e-08 | 3 |
T cell | 1.43e-07 | 25 |
pro-T cell | 1.43e-07 | 25 |
antibody secreting cell | 7.82e-07 | 1 |
plasma cell | 7.82e-07 | 1 |
plasmablast | 7.82e-07 | 1 |
androgen binding protein secreting cell | 8.75e-07 | 1 |
seminiferous tubule epithelial cell | 8.75e-07 | 1 |
Sertoli cell | 8.75e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
hepatopancreatic ampulla | 5.89e-07 | 1 |
extrahepatic bile duct | 5.89e-07 | 1 |
common bile duct | 5.89e-07 | 1 |
duodenal papilla | 5.89e-07 | 1 |
mesothelium | 8.75e-07 | 1 |
seminiferous tubule of testis | 8.75e-07 | 1 |
epithelium of male gonad | 8.75e-07 | 1 |
epithelial cord | 8.75e-07 | 1 |
sex cord | 8.75e-07 | 1 |
seminiferous tubule epithelium | 8.75e-07 | 1 |
testis sex cord | 8.75e-07 | 1 |
genital ridge | 8.75e-07 | 1 |
primitive sex cord of indifferent gonad | 8.75e-07 | 1 |
coelomic epithelium | 8.75e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.