FFCP PHASE1:Hg19::chr19:39898715..39898729,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C250|description=CAGE_peak_at_chr19:39898715..39898729,+|id=chr19:39898715..39898729,+|ontology_enrichment_celltype=CL:0002057!2.64e-25!42;CL:0000860!6.11e-24!45;CL:0000738!1.61e-23!140;CL:0000766!3.49e-23!76;CL:0002009!6.95e-19!65;CL:0000557!7.02e-19!71;CL:0002194!7.60e-18!63;CL:0000576!7.60e-18!63;CL:0000040!7.60e-18!63;CL:0000559!7.60e-18!63;CL:0000839!1.55e-17!70;CL:0002087!7.68e-17!119;CL:0002031!1.76e-16!124;CL:0000037!3.19e-13!172;CL:0000566!3.19e-13!172;CL:0000988!4.68e-13!182;CL:0002032!2.39e-12!165;CL:0000837!2.39e-12!165;CL:0000763!1.04e-11!112;CL:0000049!1.04e-11!112|ontology_enrichment_celltype_v019=CL:0000860;5.57e-29;33!CL:0002057;5.57e-29;33!CL:0000473;1.47e-22;39!CL:0000234;1.47e-22;39!CL:0000576;2.95e-19;48!CL:0000766;4.76e-17;69!CL:0000094;6.34e-09;8!CL:0002087;1.68e-07;104!CL:0000738;6.55e-07;136!CL:0000081;6.61e-07;11!CL:0000763;7.31e-07;100|ontology_enrichment_celltype_v019_2=CL:0000860,1.33e-37,42;CL:0002057,1.33e-37,42;CL:0000473,1.00e-35,48;CL:0000234,1.00e-35,48;CL:0000766,2.15e-34,72;CL:0000738,1.05e-29,136;CL:0000557,3.03e-28,67;CL:0002009,1.34e-27,61;CL:0002194,5.26e-26,59;CL:0000576,5.26e-26,59;CL:0000040,5.26e-26,59;CL:0000559,5.26e-26,59;CL:0000839,5.74e-26,66;CL:0002031,1.33e-20,120;CL:0002087,3.52e-20,115;CL:0000763,8.82e-20,108;CL:0000049,8.82e-20,108;CL:0000037,5.97e-19,168;CL:0002032,4.21e-17,161;CL:0000837,4.21e-17,161;CL:0000988,4.47e-17,177;CL:0000094,6.84e-09,8;CL:0002393,2.39e-07,9;CL:0002397,2.39e-07,9;CL:0000081,8.39e-07,11|ontology_enrichment_development_v019=CL:0002057;3.85e-27;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!4.15e-19!102;UBERON:0003061!4.15e-19!102;UBERON:0007023!9.79e-18!115;UBERON:0002193!3.34e-16!112;UBERON:0002371!3.61e-16!80;UBERON:0001474!7.10e-14!86;UBERON:0004765!5.52e-12!101;UBERON:0001434!5.52e-12!101;UBERON:0002405!2.82e-10!115|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,9.15e-25,76;UBERON:0002390,1.03e-24,98;UBERON:0003061,1.03e-24,98;UBERON:0001474,1.55e-22,82;UBERON:0002193,5.72e-22,108;UBERON:0004765,2.01e-21,90;UBERON:0002405,1.05e-19,93;UBERON:0001434,1.08e-19,100;UBERON:0007023,2.61e-15,114;UBERON:0002204,1.19e-09,167;UBERON:0003081,7.90e-09,203|phase1_expression=0.726713517082227,3.21150785836475,0.986680828671798,0,1.34088328328186,0,0,0.631719873426831,0.522371256399677,0.245733936501509,0.697801167972428,0.436882744260345,0,0.866364470720326,2.98257638155124,1.34465029290355,0,0,0,0,0.204000691244253,0,0,0.273748850145768,0,1.91033514369878,0.821005894499457,1.25937250101887,10.2274711980715,7.29275856384704,14.0882672217629,0,0.90361775633475,0.369754010166788,0.309868802321207,0.142169232487422,0,9.97191735357379,80.8194123304671,26.4753262273339,0.895661896959697,0.971680998056939,0.77272670290256,13.6674344452791,13.2256580291083,8.49044214157357,25.3347650227196,30.8375916016369,19.8212077372866,40.2769349251011,35.0940167944868,17.9726494715325,35.1640594351351,30.3377801284398,43.3364757101894,25.6009581777942,19.1034305040492,4.71919317334678,54.1768489496498,20.53945773287,39.6389017995406,15.5030111087757,30.9168669313529,20.4587880255693,19.4440189881151,13.0498601678962,21.1759564658495,40.4510351063357,29.2030434315313,17.5922964211144,15.7403870684676,8.10210799172642,10.7597211729901,8.02770087985379,11.2680278981473,2.72556239160889,5.05478840159228,7.80919842775833,10.7686143087044,1.71007646244749,3.58050018958362,1.0959849225878,0,0,0,0.853460445133014,0.400395987036012,0.574752439954483,0,0.954053754535364,9.10740750575117,15.8554041130153,14.5263826687587,0,1.68152568894461,1.31692042387539,5.11445402295966,31.8338717826823,46.4659387738891,0.334372990781356,0.977766799900771,0.946895611469467,1.94826728407911,1.11410456885174,2.3568472597987,1.77227115666897,1.35401931882508,1.79327847615945,1.30059347559878,0.657751618414705,0.276350017785848,0.579606171470105,1.63115219478266,1.07016331235885,0,0.339928028092699,0.766440987203842,0.68725489096526,2.02415753615602,1.59282707162048,0,0.950452044448374,0.301150238155546,0.383959833463255,0,0,0.821127996921047,12.2980113367087,44.6625126958457,12.1652499261551,2.43806866313962,0,0.12786256184353,0.361439152384566,0,1.15877215168659,0,0.486634870302636,0.189069634328136,0,0.527008714158756,1.37528029272598,0.364295288292542,0.370784442784429,0,0,0.132957960518865,2.8618874916641,2.85997455390064,2.22874500797739,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,17.1314542666882,27.1446184903828,0.436094052142534,1.98788780678127,0.12663051166458,0.529636723252875,0.286836620748814,1.77334191099179,0,0,0.24666754841716,0.311211035399766,0.134710672069688,0,0.151357427644931,0,0,0.31216007683032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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C250 | |||
|description=CAGE_peak_at_chr19:39898715..39898729,+ | |||
|id=chr19:39898715..39898729,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.64e-25!42;CL:0000860!6.11e-24!45;CL:0000738!1.61e-23!140;CL:0000766!3.49e-23!76;CL:0002009!6.95e-19!65;CL:0000557!7.02e-19!71;CL:0002194!7.60e-18!63;CL:0000576!7.60e-18!63;CL:0000040!7.60e-18!63;CL:0000559!7.60e-18!63;CL:0000839!1.55e-17!70;CL:0002087!7.68e-17!119;CL:0002031!1.76e-16!124;CL:0000037!3.19e-13!172;CL:0000566!3.19e-13!172;CL:0000988!4.68e-13!182;CL:0002032!2.39e-12!165;CL:0000837!2.39e-12!165;CL:0000763!1.04e-11!112;CL:0000049!1.04e-11!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.57e-29;33!CL:0002057;5.57e-29;33!CL:0000473;1.47e-22;39!CL:0000234;1.47e-22;39!CL:0000576;2.95e-19;48!CL:0000766;4.76e-17;69!CL:0000094;6.34e-09;8!CL:0002087;1.68e-07;104!CL:0000738;6.55e-07;136!CL:0000081;6.61e-07;11!CL:0000763;7.31e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.33e-37,42;CL:0002057,1.33e-37,42;CL:0000473,1.00e-35,48;CL:0000234,1.00e-35,48;CL:0000766,2.15e-34,72;CL:0000738,1.05e-29,136;CL:0000557,3.03e-28,67;CL:0002009,1.34e-27,61;CL:0002194,5.26e-26,59;CL:0000576,5.26e-26,59;CL:0000040,5.26e-26,59;CL:0000559,5.26e-26,59;CL:0000839,5.74e-26,66;CL:0002031,1.33e-20,120;CL:0002087,3.52e-20,115;CL:0000763,8.82e-20,108;CL:0000049,8.82e-20,108;CL:0000037,5.97e-19,168;CL:0002032,4.21e-17,161;CL:0000837,4.21e-17,161;CL:0000988,4.47e-17,177;CL:0000094,6.84e-09,8;CL:0002393,2.39e-07,9;CL:0002397,2.39e-07,9;CL:0000081,8.39e-07,11 | |||
|ontology_enrichment_development_v019=CL:0002057;3.85e-27;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.15e-19!102;UBERON:0003061!4.15e-19!102;UBERON:0007023!9.79e-18!115;UBERON:0002193!3.34e-16!112;UBERON:0002371!3.61e-16!80;UBERON:0001474!7.10e-14!86;UBERON:0004765!5.52e-12!101;UBERON:0001434!5.52e-12!101;UBERON:0002405!2.82e-10!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,9.15e-25,76;UBERON:0002390,1.03e-24,98;UBERON:0003061,1.03e-24,98;UBERON:0001474,1.55e-22,82;UBERON:0002193,5.72e-22,108;UBERON:0004765,2.01e-21,90;UBERON:0002405,1.05e-19,93;UBERON:0001434,1.08e-19,100;UBERON:0007023,2.61e-15,114;UBERON:0002204,1.19e-09,167;UBERON:0003081,7.90e-09,203 | |||
|phase1_expression=0.726713517082227,3.21150785836475,0.986680828671798,0,1.34088328328186,0,0,0.631719873426831,0.522371256399677,0.245733936501509,0.697801167972428,0.436882744260345,0,0.866364470720326,2.98257638155124,1.34465029290355,0,0,0,0,0.204000691244253,0,0,0.273748850145768,0,1.91033514369878,0.821005894499457,1.25937250101887,10.2274711980715,7.29275856384704,14.0882672217629,0,0.90361775633475,0.369754010166788,0.309868802321207,0.142169232487422,0,9.97191735357379,80.8194123304671,26.4753262273339,0.895661896959697,0.971680998056939,0.77272670290256,13.6674344452791,13.2256580291083,8.49044214157357,25.3347650227196,30.8375916016369,19.8212077372866,40.2769349251011,35.0940167944868,17.9726494715325,35.1640594351351,30.3377801284398,43.3364757101894,25.6009581777942,19.1034305040492,4.71919317334678,54.1768489496498,20.53945773287,39.6389017995406,15.5030111087757,30.9168669313529,20.4587880255693,19.4440189881151,13.0498601678962,21.1759564658495,40.4510351063357,29.2030434315313,17.5922964211144,15.7403870684676,8.10210799172642,10.7597211729901,8.02770087985379,11.2680278981473,2.72556239160889,5.05478840159228,7.80919842775833,10.7686143087044,1.71007646244749,3.58050018958362,1.0959849225878,0,0,0,0.853460445133014,0.400395987036012,0.574752439954483,0,0.954053754535364,9.10740750575117,15.8554041130153,14.5263826687587,0,1.68152568894461,1.31692042387539,5.11445402295966,31.8338717826823,46.4659387738891,0.334372990781356,0.977766799900771,0.946895611469467,1.94826728407911,1.11410456885174,2.3568472597987,1.77227115666897,1.35401931882508,1.79327847615945,1.30059347559878,0.657751618414705,0.276350017785848,0.579606171470105,1.63115219478266,1.07016331235885,0,0.339928028092699,0.766440987203842,0.68725489096526,2.02415753615602,1.59282707162048,0,0.950452044448374,0.301150238155546,0.383959833463255,0,0,0.821127996921047,12.2980113367087,44.6625126958457,12.1652499261551,2.43806866313962,0,0.12786256184353,0.361439152384566,0,1.15877215168659,0,0.486634870302636,0.189069634328136,0,0.527008714158756,1.37528029272598,0.364295288292542,0.370784442784429,0,0,0.132957960518865,2.8618874916641,2.85997455390064,2.22874500797739,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,17.1314542666882,27.1446184903828,0.436094052142534,1.98788780678127,0.12663051166458,0.529636723252875,0.286836620748814,1.77334191099179,0,0,0.24666754841716,0.311211035399766,0.134710672069688,0,0.151357427644931,0,0,0.312160076830321,0,0.448346041655403,0,0,0.140450806702248,0.61246251376468,0.61417158655884,1.13658359293342,0,1.23633464639278,0,0,0,0.250237039743928,0.277064115484183,0,1.22595118319608,0.901428353439581,0.113432183160021,0.358779271377724,0,0.211931901159562,0.900273288253207,0.309157587715317,0.772921620136887,0.558350568994769,0,0.0974370051611986,0.252433774244115,0,1.77810662500693,0.710019185033229,0.10075209822764,0,0.386521706326594,0,0,0.365921118388786,0,0.232387885739037,0.10366105501537,0,0,0,0.643240938192885,0,4.64367928031979,0.721879481669586,0,0,0.241011029883482,0,0.217879444092406,0,0,0,0,0,0,0,0,0,1.96565443335525,0.590789906681404,0,0.122988438543114,0,0.329250856225877,0,0.703702806881416,0.370353780634118,0,0,0,0.115930404975077,0.117408694235822,0,0.925971025153221,0.190254152234598,1.58040879591855,0.858486162094873,0.246217006087397,0,0.445893486866185,0,0,0,0.53735113621709,0,0.383382679165211,0,0.264145302039678,71.9428560926479,56.062661879198,48.9820641694354,0.063497894292169,0,0,0,0.205654985406647,0,0,0,0,0.07333828582095,0.387815147273333,3.57656445851882,0,0,0,0,0,0.266422179016099,0.57191197463259,0,0.823240336780769,0,0.355391948742546,0.791951872933429,0,0,0.399891964728228,2.43247561282381,3.01354254859276,12.6500363689819,0.718874566474748,1.14861935834114,0,0.289562613335158,1.43833425785268,0.358121926479791,0.112085143993527,8.47232268868287,34.5004119775228,12.5776175554153,0,0,0.773288812777695,0,0.637938751653163,52.4304916763028,95.731666945288,20.7207756718018,3.31267027641678,1.50051156317903,0.542530047399471,0.831883446123229,2.85486382075459,0.630809660135739,0.702848489956279,0,0,0,0,0.368738337083406,0.695068915744663,0.391602314925481,0.686286847621712,3.51505644408909,34.0828437293415,29.3500783959472,0,1.66435439510497,0.604780586659361,0.248107807818777,0.153461973288062,0.841980283299221,0,0,0.804269605718038,0,0.771048469013278,0,0.0821271560138091,1.03850885836724,0.581051892299796,0.362578348774867,1.00253235151642,3.86740153530765,0,0.364182336013434,0.524497659837696,0,0.15403067420883,0,0,0,0,0.170093705276516,0,0,0.270946437543853,0,0,0,0,0.219259876645935,0,0,0,0,2.88514832613622,0,0,0.574265537996172,2.60024098414608,0,0.096670718292122,0,0.460511024178389,0.275673144969061,0.214840489736547,1.16013355131383,0.340906509664404,0.267096106940212,0.661139661443912,0.576570202095319,0.255225424989168,1.0115778085555,0.464845549297286,0.62962469366128,0,0,0,0,0.18532421910392,0,0,0.316379424718726,0,0.25589779131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| |||
|short_description=p@chr19:39898715..39898729,+ | |||
}} |
Revision as of 20:35, 11 September 2013
Short description: | p@chr19:39898715..39898729, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:39898715..39898729, + |
Coexpression cluster: | C250_Mast_Neutrophils_CD14_Eosinophils_CD8_Peripheral_CD4 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.33e-37 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.33e-37 | 42 |
defensive cell | 1.00e-35 | 48 |
phagocyte | 1.00e-35 | 48 |
myeloid leukocyte | 2.15e-34 | 72 |
leukocyte | 1.05e-29 | 136 |
granulocyte monocyte progenitor cell | 3.03e-28 | 67 |
macrophage dendritic cell progenitor | 1.34e-27 | 61 |
monopoietic cell | 5.26e-26 | 59 |
monocyte | 5.26e-26 | 59 |
monoblast | 5.26e-26 | 59 |
promonocyte | 5.26e-26 | 59 |
myeloid lineage restricted progenitor cell | 5.74e-26 | 66 |
hematopoietic lineage restricted progenitor cell | 1.33e-20 | 120 |
nongranular leukocyte | 3.52e-20 | 115 |
myeloid cell | 8.82e-20 | 108 |
common myeloid progenitor | 8.82e-20 | 108 |
hematopoietic stem cell | 5.97e-19 | 168 |
hematopoietic oligopotent progenitor cell | 4.21e-17 | 161 |
hematopoietic multipotent progenitor cell | 4.21e-17 | 161 |
hematopoietic cell | 4.47e-17 | 177 |
granulocyte | 6.84e-09 | 8 |
intermediate monocyte | 2.39e-07 | 9 |
CD14-positive, CD16-positive monocyte | 2.39e-07 | 9 |
blood cell | 8.39e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 9.15e-25 | 76 |
hematopoietic system | 1.03e-24 | 98 |
blood island | 1.03e-24 | 98 |
bone element | 1.55e-22 | 82 |
hemolymphoid system | 5.72e-22 | 108 |
skeletal element | 2.01e-21 | 90 |
immune system | 1.05e-19 | 93 |
skeletal system | 1.08e-19 | 100 |
adult organism | 2.61e-15 | 114 |
musculoskeletal system | 1.19e-09 | 167 |
lateral plate mesoderm | 7.90e-09 | 203 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.