FFCP PHASE1:Hg19::chr19:46021252..46021263,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C329|description=CAGE_peak_at_chr19:46021252..46021263,+|id=chr19:46021252..46021263,+|ontology_enrichment_celltype=CL:0002057!9.67e-26!42;CL:0000860!4.16e-24!45;CL:0000766!7.70e-20!76;CL:0000557!7.85e-19!71;CL:0002009!2.10e-18!65;CL:0002194!9.26e-18!63;CL:0000576!9.26e-18!63;CL:0000040!9.26e-18!63;CL:0000559!9.26e-18!63;CL:0000839!1.36e-17!70;CL:0000763!4.87e-16!112;CL:0000049!4.87e-16!112;CL:0002371!1.01e-11!591;CL:0000144!1.92e-11!625;CL:0000738!1.30e-10!140;CL:0000988!2.56e-10!182;CL:0002032!1.07e-09!165;CL:0000837!1.07e-09!165;CL:0000037!1.51e-09!172;CL:0000566!1.51e-09!172;CL:0002031!1.69e-09!124;CL:0002087!9.04e-09!119;CL:0000034!1.14e-08!444;CL:0000048!1.57e-08!430;CL:0000723!1.69e-08!436;CL:0000003!6.08e-08!722;CL:0000134!1.28e-07!358;CL:0002320!1.35e-07!365;CL:0000548!1.87e-07!679;CL:0000004!1.87e-07!679;CL:0000255!1.87e-07!679;CL:0000012!4.55e-07!682|ontology_enrichment_celltype_v019=CL:0000860;2.23e-55;33!CL:0002057;2.23e-55;33!CL:0000473;1.15e-40;39!CL:0000234;1.15e-40;39!CL:0000576;1.40e-33;48!CL:0000766;1.95e-25;69!CL:0000763;7.69e-15;100!CL:0000775;3.46e-11;3!CL:0002087;1.68e-09;104!CL:0000738;4.31e-08;136!CL:0000094;6.57e-07;8|ontology_enrichment_celltype_v019_2=CL:0000860,1.88e-63,42;CL:0002057,1.88e-63,42;CL:0000473,1.05e-58,48;CL:0000234,1.05e-58,48;CL:0000766,7.00e-50,72;CL:0002194,2.96e-45,59;CL:0000576,2.96e-45,59;CL:0000040,2.96e-45,59;CL:0000559,2.96e-45,59;CL:0002009,1.60e-43,61;CL:0000839,2.52e-42,66;CL:0000557,1.42e-41,67;CL:0000763,2.94e-34,108;CL:0000049,2.94e-34,108;CL:0000738,1.37e-23,136;CL:0002087,7.65e-21,115;CL:0002032,7.77e-20,161;CL:0000837,7.77e-20,161;CL:0000037,7.82e-20,168;CL:0002031,1.26e-19,120;CL:0000988,1.68e-19,177;CL:0000775,2.49e-11,3;CL:0000134,2.98e-07,354;CL:0000094,5.69e-07,8;CL:0002320,6.37e-07,361|ontology_enrichment_development_v019=CL:0002057;1.79e-47;42!CL:0000049;1.28e-11;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!8.91e-18!102;UBERON:0003061!8.91e-18!102;UBERON:0002371!3.66e-17!80;UBERON:0001474!3.89e-16!86;UBERON:0002193!5.54e-16!112;UBERON:0004765!7.33e-16!101;UBERON:0001434!7.33e-16!101;UBERON:0003081!2.16e-13!216;UBERON:0002204!2.12e-12!167;UBERON:0002405!5.93e-12!115;UBERON:0002384!8.07e-07!375|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.06e-35,76;UBERON:0002390,5.54e-34,98;UBERON:0003061,5.54e-34,98;UBERON:0001474,1.70e-32,82;UBERON:0002193,4.84e-32,108;UBERON:0002405,8.72e-30,93;UBERON:0004765,6.97e-29,90;UBERON:0001434,3.53e-25,100;UBERON:0003081,2.59e-21,203;UBERON:0002204,7.76e-14,167;UBERON:0000926,3.54e-12,315;UBERON:0004120,3.54e-12,315;UBERON:0006603,3.54e-12,315|phase1_expression=0,0.856402095563933,0.281908808191942,1.0007329835313,0.893922188854576,0.872338524100369,0,0,0,0,2.09340350391728,0,0.263766978228454,0.123766352960047,0,0,0,0,0.487932798790507,0.123121058076788,0,0.313454721478088,0.286235987131057,0.273748850145768,0.376627918784408,0.229240217243854,0.164201178899891,0.157421562627358,1.18009283054671,0,0.309632246632152,0,1.204823675113,0,0,0.142169232487422,0.293600439334847,0,0.601633342410425,1.08505435357926,0.223915474239924,0,0,2.4717700592526,2.64513160582167,0.970336244751265,2.09186133215116,0.822335776043652,2.16794459626573,2.3015391385772,2.0492856522328,1.89185783910868,1.03423704220986,2.5819387343353,0,4.1413314699373,3.0019676506363,2.69668181334102,5.81559395504715,0.962787081228281,3.19668562899521,3.62836430205388,1.19678194572979,2.13112375266347,8.12585868160035,3.40431134814684,4.9825779919646,1.25624332628372,1.5644487552606,1.3031330682307,3.63239701580021,1.47311054395026,2.21523671208619,0.845021145247767,1.91343869968539,0.209658645508376,0.561643155732475,0.450530678524519,0.16072558669708,0.855038231223746,1.19350006319454,2.00930569141097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.822405995998037,0.501559486172034,0.651844533267181,0,0,0.222820913770347,0,0.443067789167242,0.541607727530031,0.25618263945135,0.650296737799391,0.164437904603676,0,0.579606171470105,0.444859689486181,0,0,0.113309342697566,0,0,0.253019692019503,0,0,0,0,0.383959833463255,0,0.236777252044017,0.821127996921047,0.201606743224732,0.534880391567015,0,0,0.670700859703636,0,0,0.50133791063589,0.144846518960824,0.795285947051099,0,0.189069634328136,0.443458794925128,0.263504357079378,0.0654895377488563,0.728590576585084,1.11235332835329,0,0.174129737299267,0.930705723632056,0.238490624305342,0,0,0,0,0,0.56530794192401,0,1.10047216776027,0.417989933073621,0.516833518338658,0.35576626268671,0,0.805658634218294,0.760272105718513,0.488124115096339,0.367663080345869,0.81014194788176,0.0892997282840798,0,0.112611480483322,0,0.949265659568129,1.09921046358244,0,0,0.436094052142534,0,0.506522046658319,0.13240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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C329 | |||
|description=CAGE_peak_at_chr19:46021252..46021263,+ | |||
|id=chr19:46021252..46021263,+ | |||
|ontology_enrichment_celltype=CL:0002057!9.67e-26!42;CL:0000860!4.16e-24!45;CL:0000766!7.70e-20!76;CL:0000557!7.85e-19!71;CL:0002009!2.10e-18!65;CL:0002194!9.26e-18!63;CL:0000576!9.26e-18!63;CL:0000040!9.26e-18!63;CL:0000559!9.26e-18!63;CL:0000839!1.36e-17!70;CL:0000763!4.87e-16!112;CL:0000049!4.87e-16!112;CL:0002371!1.01e-11!591;CL:0000144!1.92e-11!625;CL:0000738!1.30e-10!140;CL:0000988!2.56e-10!182;CL:0002032!1.07e-09!165;CL:0000837!1.07e-09!165;CL:0000037!1.51e-09!172;CL:0000566!1.51e-09!172;CL:0002031!1.69e-09!124;CL:0002087!9.04e-09!119;CL:0000034!1.14e-08!444;CL:0000048!1.57e-08!430;CL:0000723!1.69e-08!436;CL:0000003!6.08e-08!722;CL:0000134!1.28e-07!358;CL:0002320!1.35e-07!365;CL:0000548!1.87e-07!679;CL:0000004!1.87e-07!679;CL:0000255!1.87e-07!679;CL:0000012!4.55e-07!682 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.23e-55;33!CL:0002057;2.23e-55;33!CL:0000473;1.15e-40;39!CL:0000234;1.15e-40;39!CL:0000576;1.40e-33;48!CL:0000766;1.95e-25;69!CL:0000763;7.69e-15;100!CL:0000775;3.46e-11;3!CL:0002087;1.68e-09;104!CL:0000738;4.31e-08;136!CL:0000094;6.57e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.88e-63,42;CL:0002057,1.88e-63,42;CL:0000473,1.05e-58,48;CL:0000234,1.05e-58,48;CL:0000766,7.00e-50,72;CL:0002194,2.96e-45,59;CL:0000576,2.96e-45,59;CL:0000040,2.96e-45,59;CL:0000559,2.96e-45,59;CL:0002009,1.60e-43,61;CL:0000839,2.52e-42,66;CL:0000557,1.42e-41,67;CL:0000763,2.94e-34,108;CL:0000049,2.94e-34,108;CL:0000738,1.37e-23,136;CL:0002087,7.65e-21,115;CL:0002032,7.77e-20,161;CL:0000837,7.77e-20,161;CL:0000037,7.82e-20,168;CL:0002031,1.26e-19,120;CL:0000988,1.68e-19,177;CL:0000775,2.49e-11,3;CL:0000134,2.98e-07,354;CL:0000094,5.69e-07,8;CL:0002320,6.37e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;1.79e-47;42!CL:0000049;1.28e-11;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!8.91e-18!102;UBERON:0003061!8.91e-18!102;UBERON:0002371!3.66e-17!80;UBERON:0001474!3.89e-16!86;UBERON:0002193!5.54e-16!112;UBERON:0004765!7.33e-16!101;UBERON:0001434!7.33e-16!101;UBERON:0003081!2.16e-13!216;UBERON:0002204!2.12e-12!167;UBERON:0002405!5.93e-12!115;UBERON:0002384!8.07e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.06e-35,76;UBERON:0002390,5.54e-34,98;UBERON:0003061,5.54e-34,98;UBERON:0001474,1.70e-32,82;UBERON:0002193,4.84e-32,108;UBERON:0002405,8.72e-30,93;UBERON:0004765,6.97e-29,90;UBERON:0001434,3.53e-25,100;UBERON:0003081,2.59e-21,203;UBERON:0002204,7.76e-14,167;UBERON:0000926,3.54e-12,315;UBERON:0004120,3.54e-12,315;UBERON:0006603,3.54e-12,315 | |||
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| |||
|short_description=p@chr19:46021252..46021263,+ | |||
}} |
Revision as of 21:18, 11 September 2013
Short description: | p@chr19:46021252..46021263, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:46021252..46021263, + |
Coexpression cluster: | C329_Neutrophils_CD14_Monocytederived_Whole_Peripheral_CD14CD16_Eosinophils |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.88e-63 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.88e-63 | 42 |
defensive cell | 1.05e-58 | 48 |
phagocyte | 1.05e-58 | 48 |
myeloid leukocyte | 7.00e-50 | 72 |
monopoietic cell | 2.96e-45 | 59 |
monocyte | 2.96e-45 | 59 |
monoblast | 2.96e-45 | 59 |
promonocyte | 2.96e-45 | 59 |
macrophage dendritic cell progenitor | 1.60e-43 | 61 |
myeloid lineage restricted progenitor cell | 2.52e-42 | 66 |
granulocyte monocyte progenitor cell | 1.42e-41 | 67 |
myeloid cell | 2.94e-34 | 108 |
common myeloid progenitor | 2.94e-34 | 108 |
leukocyte | 1.37e-23 | 136 |
nongranular leukocyte | 7.65e-21 | 115 |
hematopoietic oligopotent progenitor cell | 7.77e-20 | 161 |
hematopoietic multipotent progenitor cell | 7.77e-20 | 161 |
hematopoietic stem cell | 7.82e-20 | 168 |
hematopoietic lineage restricted progenitor cell | 1.26e-19 | 120 |
hematopoietic cell | 1.68e-19 | 177 |
neutrophil | 2.49e-11 | 3 |
mesenchymal cell | 2.98e-07 | 354 |
granulocyte | 5.69e-07 | 8 |
connective tissue cell | 6.37e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.06e-35 | 76 |
hematopoietic system | 5.54e-34 | 98 |
blood island | 5.54e-34 | 98 |
bone element | 1.70e-32 | 82 |
hemolymphoid system | 4.84e-32 | 108 |
immune system | 8.72e-30 | 93 |
skeletal element | 6.97e-29 | 90 |
skeletal system | 3.53e-25 | 100 |
lateral plate mesoderm | 2.59e-21 | 203 |
musculoskeletal system | 7.76e-14 | 167 |
mesoderm | 3.54e-12 | 315 |
mesoderm-derived structure | 3.54e-12 | 315 |
presumptive mesoderm | 3.54e-12 | 315 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.