FFCP PHASE1:Hg19::chr1:202172827..202172845,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=59352|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=19719|TSSclassifier=S|UniProt=Q5T508|association_with_transcript=-18bp_to_ENST00000255432,ENST00000367277_5end|coexpression_cluster_id=C98|description=CAGE_peak_5_at_LGR6_5end|id=chr1:202172827..202172845,+|ontology_enrichment_celltype=CL:0000625!2.17e-26!11;CL:0000791!2.49e-25!18;CL:0000789!2.49e-25!18;CL:0002420!2.49e-25!18;CL:0002419!2.49e-25!18;CL:0000790!2.49e-25!18;CL:0000084!2.80e-17!25;CL:0000827!2.80e-17!25;CL:0000838!2.53e-12!52;CL:0000542!5.24e-12!53;CL:0000051!5.24e-12!53;CL:0000623!2.94e-10!3;CL:0000825!2.94e-10!3;CL:0000037!3.00e-10!172;CL:0000566!3.00e-10!172;CL:0000767!1.03e-09!3;CL:0000738!1.06e-09!140;CL:0000842!1.54e-09!3;CL:0000988!3.12e-09!182;CL:0002087!1.23e-08!119;CL:0002032!1.79e-08!165;CL:0000837!1.79e-08!165;CL:0000224!3.11e-07!4;CL:0002031!3.99e-07!124|ontology_enrichment_celltype_v019=CL:0000625;5.45e-62;11!CL:0000791;2.89e-37;18!CL:0000789;2.89e-37;18!CL:0002419;2.89e-37;18!CL:0000084;2.26e-26;25!CL:0000623;1.44e-22;3!CL:0000767;3.00e-21;3!CL:0000226;5.22e-21;3!CL:0000842;5.22e-21;3!CL:0000542;1.09e-10;53!CL:0000094;2.65e-08;8!CL:0002087;7.30e-07;104|ontology_enrichment_celltype_v019_2=CL:0000625,1.91e-62,11;CL:0000791,1.53e-37,18;CL:0000789,1.53e-37,18;CL:0002420,1.53e-37,18;CL:0002419,1.53e-37,18;CL:0000790,1.53e-37,18;CL:0000084,1.44e-26,25;CL:0000827,1.44e-26,25;CL:0000623,1.49e-22,3;CL:0000825,1.49e-22,3;CL:0000767,3.11e-21,3;CL:0000226,8.18e-21,3;CL:0000842,8.18e-21,3;CL:0000838,1.25e-20,52;CL:0000542,3.42e-20,53;CL:0000051,3.42e-20,53;CL:0000738,1.62e-16,136;CL:0002087,4.22e-14,115;CL:0000037,1.19e-12,168;CL:0000988,8.17e-12,177;CL:0002032,3.43e-09,161;CL:0000837,3.43e-09,161;CL:0002031,9.72e-09,120;CL:0000094,2.69e-08,8|ontology_enrichment_development_v019=CL:0000790;2.89e-37;18!CL:0000051;1.09e-10;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000178!1.03e-21!15;UBERON:0000179!1.03e-21!15;UBERON:0000463!1.03e-21!15;UBERON:0007023!3.27e-16!115|ontology_enrichment_uberon_v019=UBERON:0000178;1.17e-43;15!UBERON:0000179;1.17e-43;15!UBERON:0000463;1.17e-43;15!UBERON:0002390;5.21e-19;32!UBERON:0002193;1.37e-10;42|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.73e-43,15;UBERON:0000179,1.73e-43,15;UBERON:0000463,1.73e-43,15|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57345710739562,4.22212337906934,1.08371286321253,0,0,0,0,0,0,0.553995408531877,1.00272223735071,0.868043482863407,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0.560508562981536,0,0.196709770113833,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.766440987203842,1.37450978193052,1.26509846009751,1.91139248594458,3.90650072313851,1.90090408889675,3.16207750063323,2.68771883424279,4.99722906209383,2.60454977248419,0,4.03213486449465,5.61624411145365,2.89648807765598,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.13764596424047,7.33133754522359,6.67383788654692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03384013061444,1.2942852049117,2.56146138728266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.02979043692868,3.0585488285695,1.70894156152249,1.66762242820452,0,1.29694662238543,1.08006287447623,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0.664846727600626,0,0.19606253431774,0,0,0.317873157960757,0,0,0,0,0.995261931078505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0.146552233678082,0,0,0,0,0,0.320362237703084,0,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=59352 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19719 | |||
|TSSclassifier=S | |||
|UniProt=Q5T508 | |||
|association_with_transcript=-18bp_to_ENST00000255432,ENST00000367277_5end | |||
|coexpression_cluster_id=C98 | |||
|description=CAGE_peak_5_at_LGR6_5end | |||
|id=chr1:202172827..202172845,+ | |||
|ontology_enrichment_celltype=CL:0000625!2.17e-26!11;CL:0000791!2.49e-25!18;CL:0000789!2.49e-25!18;CL:0002420!2.49e-25!18;CL:0002419!2.49e-25!18;CL:0000790!2.49e-25!18;CL:0000084!2.80e-17!25;CL:0000827!2.80e-17!25;CL:0000838!2.53e-12!52;CL:0000542!5.24e-12!53;CL:0000051!5.24e-12!53;CL:0000623!2.94e-10!3;CL:0000825!2.94e-10!3;CL:0000037!3.00e-10!172;CL:0000566!3.00e-10!172;CL:0000767!1.03e-09!3;CL:0000738!1.06e-09!140;CL:0000842!1.54e-09!3;CL:0000988!3.12e-09!182;CL:0002087!1.23e-08!119;CL:0002032!1.79e-08!165;CL:0000837!1.79e-08!165;CL:0000224!3.11e-07!4;CL:0002031!3.99e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000625;5.45e-62;11!CL:0000791;2.89e-37;18!CL:0000789;2.89e-37;18!CL:0002419;2.89e-37;18!CL:0000084;2.26e-26;25!CL:0000623;1.44e-22;3!CL:0000767;3.00e-21;3!CL:0000226;5.22e-21;3!CL:0000842;5.22e-21;3!CL:0000542;1.09e-10;53!CL:0000094;2.65e-08;8!CL:0002087;7.30e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000625,1.91e-62,11;CL:0000791,1.53e-37,18;CL:0000789,1.53e-37,18;CL:0002420,1.53e-37,18;CL:0002419,1.53e-37,18;CL:0000790,1.53e-37,18;CL:0000084,1.44e-26,25;CL:0000827,1.44e-26,25;CL:0000623,1.49e-22,3;CL:0000825,1.49e-22,3;CL:0000767,3.11e-21,3;CL:0000226,8.18e-21,3;CL:0000842,8.18e-21,3;CL:0000838,1.25e-20,52;CL:0000542,3.42e-20,53;CL:0000051,3.42e-20,53;CL:0000738,1.62e-16,136;CL:0002087,4.22e-14,115;CL:0000037,1.19e-12,168;CL:0000988,8.17e-12,177;CL:0002032,3.43e-09,161;CL:0000837,3.43e-09,161;CL:0002031,9.72e-09,120;CL:0000094,2.69e-08,8 | |||
|ontology_enrichment_development_v019=CL:0000790;2.89e-37;18!CL:0000051;1.09e-10;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.03e-21!15;UBERON:0000179!1.03e-21!15;UBERON:0000463!1.03e-21!15;UBERON:0007023!3.27e-16!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.17e-43;15!UBERON:0000179;1.17e-43;15!UBERON:0000463;1.17e-43;15!UBERON:0002390;5.21e-19;32!UBERON:0002193;1.37e-10;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.73e-43,15;UBERON:0000179,1.73e-43,15;UBERON:0000463,1.73e-43,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57345710739562,4.22212337906934,1.08371286321253,0,0,0,0,0,0,0.553995408531877,1.00272223735071,0.868043482863407,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0.560508562981536,0,0.196709770113833,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.766440987203842,1.37450978193052,1.26509846009751,1.91139248594458,3.90650072313851,1.90090408889675,3.16207750063323,2.68771883424279,4.99722906209383,2.60454977248419,0,4.03213486449465,5.61624411145365,2.89648807765598,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.13764596424047,7.33133754522359,6.67383788654692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03384013061444,1.2942852049117,2.56146138728266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.02979043692868,3.0585488285695,1.70894156152249,1.66762242820452,0,1.29694662238543,1.08006287447623,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0.664846727600626,0,0.19606253431774,0,0,0.317873157960757,0,0,0,0,0.995261931078505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0.146552233678082,0,0,0,0,0,0.320362237703084,0,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,0,0.281951753939561,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0.0918948995348449,0,0,0,0,0,0,0,0.0645889098360061,0,0,0.0636471582781649,0,0,0,0.26940821205835,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p5@LGR6 | |||
}} |
Revision as of 02:49, 12 September 2013
Short description: | p5@LGR6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_LGR6_5end |
Coexpression cluster: | C98_CD8_Natural_Basophils_blood_CD4_Peripheral_Whole |
Association with transcript: | -18bp_to_ENST00000255432, ENST00000367277_5end |
EntrezGene: | LGR6 |
HGNC: | 19719 |
UniProt: | Q5T508 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD8-positive, alpha-beta T cell | 1.91e-62 | 11 |
mature alpha-beta T cell | 1.53e-37 | 18 |
alpha-beta T cell | 1.53e-37 | 18 |
immature T cell | 1.53e-37 | 18 |
mature T cell | 1.53e-37 | 18 |
immature alpha-beta T cell | 1.53e-37 | 18 |
T cell | 1.44e-26 | 25 |
pro-T cell | 1.44e-26 | 25 |
natural killer cell | 1.49e-22 | 3 |
pro-NK cell | 1.49e-22 | 3 |
basophil | 3.11e-21 | 3 |
single nucleate cell | 8.18e-21 | 3 |
mononuclear cell | 8.18e-21 | 3 |
lymphoid lineage restricted progenitor cell | 1.25e-20 | 52 |
lymphocyte | 3.42e-20 | 53 |
common lymphoid progenitor | 3.42e-20 | 53 |
leukocyte | 1.62e-16 | 136 |
nongranular leukocyte | 4.22e-14 | 115 |
hematopoietic stem cell | 1.19e-12 | 168 |
hematopoietic cell | 8.17e-12 | 177 |
hematopoietic oligopotent progenitor cell | 3.43e-09 | 161 |
hematopoietic multipotent progenitor cell | 3.43e-09 | 161 |
hematopoietic lineage restricted progenitor cell | 9.72e-09 | 120 |
granulocyte | 2.69e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
blood | 1.73e-43 | 15 |
haemolymphatic fluid | 1.73e-43 | 15 |
organism substance | 1.73e-43 | 15 |
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