FFCP PHASE1:Hg19::chr20:32399037..32399048,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=128866|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=16171|TSSclassifier=S|UniProt=P59074,Q9H444|association_with_transcript=-61bp_to_ENST00000217402,NM_176812_5end|coexpression_cluster_id=C0|description=CAGE_peak_4_at_CHMP4B_5end|id=chr20:32399037..32399048,+|ontology_enrichment_celltype=CL:0000766!8.15e-19!76;CL:0000860!1.06e-17!45;CL:0002057!1.99e-17!42;CL:0002009!2.53e-15!65;CL:0000557!5.47e-15!71;CL:0002194!1.36e-14!63;CL:0000576!1.36e-14!63;CL:0000040!1.36e-14!63;CL:0000559!1.36e-14!63;CL:0000839!4.09e-14!70;CL:0000213!4.31e-09!57;CL:0000215!4.31e-09!57;CL:0000738!9.02e-09!140;CL:0000763!9.92e-09!112;CL:0000049!9.92e-09!112;CL:0002139!9.77e-08!24;CL:0000115!1.08e-07!35|ontology_enrichment_celltype_v019=CL:0000860;9.33e-23;33!CL:0002057;9.33e-23;33!CL:0000473;1.91e-17;39!CL:0000234;1.91e-17;39!CL:0000576;2.48e-11;48!CL:0000766;1.34e-09;69!CL:0002139;1.48e-08;24!CL:0000071;6.53e-08;18!CL:0000115;1.92e-07;36!CL:1000413;5.46e-07;9!CL:0000094;9.32e-07;8|ontology_enrichment_celltype_v019_2=CL:0000860,2.63e-21,42;CL:0002057,2.63e-21,42;CL:0000473,3.19e-20,48;CL:0000234,3.19e-20,48;CL:0000766,7.40e-20,72;CL:0002009,3.18e-16,61;CL:0000557,1.55e-15,67;CL:0002194,2.75e-15,59;CL:0000576,2.75e-15,59;CL:0000040,2.75e-15,59;CL:0000559,2.75e-15,59;CL:0000839,3.79e-14,66;CL:0000763,6.08e-11,108;CL:0000049,6.08e-11,108;CL:0000213,7.42e-11,58;CL:0000215,7.42e-11,58;CL:0002139,1.28e-08,24;CL:0000115,1.36e-08,36;CL:0000738,1.37e-08,136;CL:0000071,6.72e-08,18;CL:0002546,6.72e-08,18;CL:0002078,8.73e-08,45;CL:1000413,3.05e-07,9;CL:0000094,5.23e-07,8|ontology_enrichment_development_v019=CL:0002057;3.21e-16;42!CL:0002546;6.53e-08;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003081!1.44e-17!216;UBERON:0002193!1.48e-14!112;UBERON:0002390!1.95e-14!102;UBERON:0003061!1.95e-14!102;UBERON:0002371!1.63e-12!80;UBERON:0001474!1.41e-10!86;UBERON:0002405!1.06e-09!115;UBERON:0004765!2.88e-08!101;UBERON:0001434!2.88e-08!101;UBERON:0000923!8.94e-07!604;UBERON:0005291!8.94e-07!604;UBERON:0006598!8.94e-07!604;UBERON:0002532!8.94e-07!604|ontology_enrichment_uberon_v019=UBERON:0004638;6.53e-08;18!UBERON:0001986;6.53e-08;18!UBERON:0004852;6.53e-08;18!UBERON:0003915;5.46e-07;9!UBERON:0004700;5.46e-07;9!UBERON:0001917;5.46e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0003081,4.81e-17,203;UBERON:0002193,8.00e-15,108;UBERON:0002390,1.39e-14,98;UBERON:0003061,1.39e-14,98;UBERON:0002371,1.70e-13,76;UBERON:0002405,3.94e-12,93;UBERON:0001474,7.61e-12,82;UBERON:0004765,9.55e-10,90;UBERON:0000926,9.57e-10,315;UBERON:0004120,9.57e-10,315;UBERON:0006603,9.57e-10,315;UBERON:0001434,4.59e-08,100;UBERON:0004638,6.72e-08,18;UBERON:0001986,6.72e-08,18;UBERON:0004852,6.72e-08,18;UBERON:0003915,3.05e-07,9;UBERON:0004700,3.05e-07,9;UBERON:0001917,3.05e-07,9|phase1_expression=0.181678379270557,0.642301571672949,0.140954404095971,1.0007329835313,0.893922188854576,1.74467704820074,0,0,0.261185628199839,0.737201809504527,4.18680700783456,1.74753097704138,0.791300934685361,0,0.331397375727916,0.672325146451775,0.602694528023977,2.92124036154949,0.975865597581014,0.861847406537515,0.816002764977012,0,0.572471974262113,1.36874425072884,0.87879847716362,0.916960868975415,1.55991119954897,0.787107813136792,1.57345710739562,2.30297638858328,1.54816123316076,0,0,0,0.232401601740905,0.284338464974843,0.293600439334847,2.21598163412751,4.8130667392834,2.60413044859022,0.671746422719773,0.971680998056939,0.515151135268373,6.39752250630085,3.77875943688809,3.88134497900506,13.7133131774354,13.1573724166984,17.0338503992307,11.507695692886,10.7587496742222,7.56743135643473,36.8877878388182,32.2742341791913,43.3364757101894,8.65914761895982,7.91427835167753,9.21366286224847,28.159718098123,23.4278189765548,32.6061934157511,4.61791820261403,3.19141852194611,5.54092175692502,43.5313857942876,39.7169657283798,43.5975574296902,17.3361579027153,16.1659704710262,8.90474263290978,30.8753746343018,38.6691517786943,30.6968515817658,1.05627643155971,0.212604299965044,0.628975936525128,0.44931452458598,1.20141514273205,0.803627933485401,0.285012743741249,0.99458338599545,0.730656615058536,1.75996244461323,0.546138611262131,0,0.853460445133014,1.60158394814405,0.574752439954483,0.661044872784862,0,0,0,0.382273228125229,0,1.12101712596307,1.05353633910031,0.786839080455332,0,0,0,0.32592226663359,0,0,0.111410456885174,0.589211814949674,0.221533894583621,0.270803863765016,0.512365278902701,0,0,0.829050053357545,0,0.444859689486181,0,0,0.679856056185397,0,0,0.759059076058509,1.59282707162048,0,0.950452044448374,0.903450714466637,1.02389288923535,0,0.947109008176067,0,0.201606743224732,1.33720097891754,0.289648807765598,0,2.01210257911091,1.02290049474824,0,0.50133791063589,0.579386075843295,0,0,0.378139268656271,1.55210578223795,0.351339142772504,2.42311289670768,0,0,1.29818957461873,0.174129737299267,1.19662164466979,0.476981248610684,0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09163045303809,1.11231401892069,0.313972371402056,2.67096502857203,2.24217730651031,0,0.647782773655864,0.47775168788705,0.500335809236594,0.158013611732727,0.581207126840626,0.521574816907738,0,0.414432328326074,0.17071847709395,1.38251932362818,0,1.53831600949735,1.36341447614652,0.846774100381858,0,0.31020638566432,2.8666168169323,2.12525320415805,0.883352102537187,0.487671699929078,4.53200186031526,1.23195368227496,0,0,0.467878926924211,0.596852325484105,0.594600453887843,0.22589216407792,0.329821550236287,0.603851374266694,1.00326405540328,1.09279780251979,0.470317296361523,0.735444965261716,0.471353094203252,0,0.891139200981258,0.4226557275834,0,0.657887425858975,0.773494655682926,1.19929387109915,0.178553938605658,1.05868461514708,2.00603416722921,0,0,1.00337708206016,0.473314686579554,1.08786384305464,0.872701380680755,0.5290268405154,0,0.462175628631418,1.29787968637137,0.504665699340316,0.546327859818478,1.14028650910293,0.407955318967927,1.60330443159336,0.643264296743914,0.250707539292375,3.18270532516606,6.43113912374828,0,0.620597975171371,0.639701945702943,0.476128862927481,0.710478008196067,1.05527014302958,1.34558235096736,1.0820016907288,0.606351566874658,0.435433495793923,0.684466602170562,0.404112318087525,1.07583308089015,0.332660356546013,1.38385556638657,0.426909383510862,1.9307228228694,1.16772762738563,2.34640942403454,0.855690109280065,0,1.99727032255654,0.603821380773079,1.28227396921293|short_description=p4@CHMP4B}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=128866 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16171 | |||
|TSSclassifier=S | |||
|UniProt=P59074,Q9H444 | |||
|association_with_transcript=-61bp_to_ENST00000217402,NM_176812_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_4_at_CHMP4B_5end | |||
|id=chr20:32399037..32399048,+ | |||
|ontology_enrichment_celltype=CL:0000766!8.15e-19!76;CL:0000860!1.06e-17!45;CL:0002057!1.99e-17!42;CL:0002009!2.53e-15!65;CL:0000557!5.47e-15!71;CL:0002194!1.36e-14!63;CL:0000576!1.36e-14!63;CL:0000040!1.36e-14!63;CL:0000559!1.36e-14!63;CL:0000839!4.09e-14!70;CL:0000213!4.31e-09!57;CL:0000215!4.31e-09!57;CL:0000738!9.02e-09!140;CL:0000763!9.92e-09!112;CL:0000049!9.92e-09!112;CL:0002139!9.77e-08!24;CL:0000115!1.08e-07!35 | |||
|ontology_enrichment_celltype_v019=CL:0000860;9.33e-23;33!CL:0002057;9.33e-23;33!CL:0000473;1.91e-17;39!CL:0000234;1.91e-17;39!CL:0000576;2.48e-11;48!CL:0000766;1.34e-09;69!CL:0002139;1.48e-08;24!CL:0000071;6.53e-08;18!CL:0000115;1.92e-07;36!CL:1000413;5.46e-07;9!CL:0000094;9.32e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.63e-21,42;CL:0002057,2.63e-21,42;CL:0000473,3.19e-20,48;CL:0000234,3.19e-20,48;CL:0000766,7.40e-20,72;CL:0002009,3.18e-16,61;CL:0000557,1.55e-15,67;CL:0002194,2.75e-15,59;CL:0000576,2.75e-15,59;CL:0000040,2.75e-15,59;CL:0000559,2.75e-15,59;CL:0000839,3.79e-14,66;CL:0000763,6.08e-11,108;CL:0000049,6.08e-11,108;CL:0000213,7.42e-11,58;CL:0000215,7.42e-11,58;CL:0002139,1.28e-08,24;CL:0000115,1.36e-08,36;CL:0000738,1.37e-08,136;CL:0000071,6.72e-08,18;CL:0002546,6.72e-08,18;CL:0002078,8.73e-08,45;CL:1000413,3.05e-07,9;CL:0000094,5.23e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;3.21e-16;42!CL:0002546;6.53e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!1.44e-17!216;UBERON:0002193!1.48e-14!112;UBERON:0002390!1.95e-14!102;UBERON:0003061!1.95e-14!102;UBERON:0002371!1.63e-12!80;UBERON:0001474!1.41e-10!86;UBERON:0002405!1.06e-09!115;UBERON:0004765!2.88e-08!101;UBERON:0001434!2.88e-08!101;UBERON:0000923!8.94e-07!604;UBERON:0005291!8.94e-07!604;UBERON:0006598!8.94e-07!604;UBERON:0002532!8.94e-07!604 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;6.53e-08;18!UBERON:0001986;6.53e-08;18!UBERON:0004852;6.53e-08;18!UBERON:0003915;5.46e-07;9!UBERON:0004700;5.46e-07;9!UBERON:0001917;5.46e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,4.81e-17,203;UBERON:0002193,8.00e-15,108;UBERON:0002390,1.39e-14,98;UBERON:0003061,1.39e-14,98;UBERON:0002371,1.70e-13,76;UBERON:0002405,3.94e-12,93;UBERON:0001474,7.61e-12,82;UBERON:0004765,9.55e-10,90;UBERON:0000926,9.57e-10,315;UBERON:0004120,9.57e-10,315;UBERON:0006603,9.57e-10,315;UBERON:0001434,4.59e-08,100;UBERON:0004638,6.72e-08,18;UBERON:0001986,6.72e-08,18;UBERON:0004852,6.72e-08,18;UBERON:0003915,3.05e-07,9;UBERON:0004700,3.05e-07,9;UBERON:0001917,3.05e-07,9 | |||
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| |||
|short_description=p4@CHMP4B | |||
}} |
Revision as of 08:07, 12 September 2013
Short description: | p4@CHMP4B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_CHMP4B_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -61bp_to_ENST00000217402, NM_176812_5end |
EntrezGene: | CHMP4B |
HGNC: | 16171 |
UniProt: | P59074Q9H444 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.63e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.63e-21 | 42 |
defensive cell | 3.19e-20 | 48 |
phagocyte | 3.19e-20 | 48 |
myeloid leukocyte | 7.40e-20 | 72 |
macrophage dendritic cell progenitor | 3.18e-16 | 61 |
granulocyte monocyte progenitor cell | 1.55e-15 | 67 |
monopoietic cell | 2.75e-15 | 59 |
monocyte | 2.75e-15 | 59 |
monoblast | 2.75e-15 | 59 |
promonocyte | 2.75e-15 | 59 |
myeloid lineage restricted progenitor cell | 3.79e-14 | 66 |
myeloid cell | 6.08e-11 | 108 |
common myeloid progenitor | 6.08e-11 | 108 |
lining cell | 7.42e-11 | 58 |
barrier cell | 7.42e-11 | 58 |
endothelial cell of vascular tree | 1.28e-08 | 24 |
endothelial cell | 1.36e-08 | 36 |
leukocyte | 1.37e-08 | 136 |
blood vessel endothelial cell | 6.72e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 6.72e-08 | 18 |
meso-epithelial cell | 8.73e-08 | 45 |
endothelial cell of artery | 3.05e-07 | 9 |
granulocyte | 5.23e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 4.81e-17 | 203 |
hemolymphoid system | 8.00e-15 | 108 |
hematopoietic system | 1.39e-14 | 98 |
blood island | 1.39e-14 | 98 |
bone marrow | 1.70e-13 | 76 |
immune system | 3.94e-12 | 93 |
bone element | 7.61e-12 | 82 |
skeletal element | 9.55e-10 | 90 |
mesoderm | 9.57e-10 | 315 |
mesoderm-derived structure | 9.57e-10 | 315 |
presumptive mesoderm | 9.57e-10 | 315 |
skeletal system | 4.59e-08 | 100 |
blood vessel endothelium | 6.72e-08 | 18 |
endothelium | 6.72e-08 | 18 |
cardiovascular system endothelium | 6.72e-08 | 18 |
endothelial tube | 3.05e-07 | 9 |
arterial system endothelium | 3.05e-07 | 9 |
endothelium of artery | 3.05e-07 | 9 |
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