FFCP PHASE1:Hg19::chr3:115511342..115511357,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C55|description=CAGE_peak_at_chr3:115511342..115511357,-|id=chr3:115511342..115511357,-|ontology_enrichment_celltype=CL:0000181!4.74e-18!12;CL:0000417!4.74e-18!12;CL:0000668!4.74e-18!12;CL:0000414!4.74e-18!12;CL:0000412!4.74e-18!12;CL:0000182!4.74e-18!12;CL:0000223!2.33e-13!59;CL:0000066!9.28e-09!254;CL:0002150!2.89e-08!3;CL:0000861!2.89e-08!3;CL:0002540!3.22e-07!6|ontology_enrichment_celltype_v019=CL:0000182;5.77e-58;12!CL:0002178;8.13e-16;3|ontology_enrichment_celltype_v019_2=CL:0000182,6.00e-58,12;CL:0000223,1.25e-21,58;CL:0002178,7.27e-16,3;CL:0000066,4.74e-09,253|ontology_enrichment_development_v019=UBERON:0009497;9.94e-68;13!UBERON:0004161;8.93e-49;11!UBERON:0001041;9.13e-29;30!UBERON:0003104;9.40e-16;31!CL:0000223;4.27e-13;58!UBERON:0006242;1.40e-12;1!UBERON:0006595;8.09e-08;86|ontology_enrichment_disease=DOID:305!1.36e-18!106;DOID:0050687!2.62e-13!143;DOID:14566!1.38e-09!239;DOID:299!8.01e-09!25;DOID:162!1.07e-08!235;DOID:7!1.59e-07!39;DOID:3493!5.95e-07!2;DOID:4929!9.79e-07!2|ontology_enrichment_disease_v019=DOID:3493;1.50e-23;2!DOID:7;7.49e-16;39!DOID:5662;4.07e-12;1!DOID:299;4.39e-11;25!DOID:4929;6.80e-07;2!DOID:305;8.64e-07;106|ontology_enrichment_disease_v019_2=DOID:3493,1.42e-23,2;DOID:305,1.51e-18,106;DOID:7,2.66e-17,39;DOID:0050687,3.06e-13,143;DOID:5662,4.31e-12,1;DOID:299,4.44e-11,25;DOID:162,3.28e-07,235;DOID:14566,5.12e-07,239;DOID:4929,6.80e-07,2|ontology_enrichment_uberon=UBERON:0009497!3.47e-19!25;UBERON:0000015!3.47e-19!25;UBERON:0002423!3.47e-19!25;UBERON:0006235!3.47e-19!25;UBERON:0004161!3.47e-19!25;UBERON:0007499!2.15e-16!25;UBERON:0008835!3.37e-16!22;UBERON:0003894!3.37e-16!22;UBERON:0009856!1.25e-15!26;UBERON:0009854!2.34e-15!23;UBERON:0003929!1.71e-13!54;UBERON:0002107!1.20e-10!19;UBERON:0006925!1.20e-10!19;UBERON:0008836!1.20e-10!19;UBERON:0002294!4.75e-10!7;UBERON:0001173!4.75e-10!7;UBERON:0004912!4.75e-10!7;UBERON:0005911!2.79e-09!82;UBERON:0005172!1.36e-08!55;UBERON:0005173!1.36e-08!55;UBERON:0000077!1.82e-07!130;UBERON:0002417!2.26e-07!61;UBERON:0000916!2.26e-07!61;UBERON:0005057!2.93e-07!26;UBERON:0002394!4.82e-07!4;UBERON:0003928!4.82e-07!4;UBERON:0001007!4.95e-07!155;UBERON:0001555!4.95e-07!155;UBERON:0007026!4.95e-07!155|ontology_enrichment_uberon_v019=UBERON:0002423;6.57e-52;25!UBERON:0002107;2.30e-36;19!UBERON:0006925;2.30e-36;19!UBERON:0002365;1.09e-21;31!UBERON:0002330;1.09e-21;31!UBERON:0002368;3.51e-20;33!UBERON:0002294;7.03e-15;7!UBERON:0001173;7.03e-15;7!UBERON:0000949;1.35e-14;43!UBERON:0002394;5.10e-12;4!UBERON:0003928;5.10e-12;4!UBERON:0005172;6.61e-10;52!UBERON:0005173;6.61e-10;52!UBERON:0000945;7.27e-10;5!UBERON:0010039;7.27e-10;5!UBERON:0002530;1.05e-08;57!UBERON:0002417;3.50e-08;58!UBERON:0000916;3.50e-08;58!UBERON:0001007;9.06e-07;81|ontology_enrichment_uberon_v019_2=UBERON:0009497,6.74e-52,25;UBERON:0000015,6.74e-52,25;UBERON:0002423,6.74e-52,25;UBERON:0006235,6.74e-52,25;UBERON:0004161,6.74e-52,25;UBERON:0008835,8.49e-49,22;UBERON:0003894,8.49e-49,22;UBERON:0009854,1.25e-46,23;UBERON:0007499,8.27e-43,25;UBERON:0009856,4.05e-41,26;UBERON:0002107,2.36e-36,19;UBERON:0006925,2.36e-36,19;UBERON:0008836,2.36e-36,19;UBERON:0003929,2.68e-23,54;UBERON:0002365,5.46e-22,31;UBERON:0002330,5.46e-22,31;UBERON:0001041,1.12e-19,87;UBERON:0002368,2.20e-19,35;UBERON:0000949,7.59e-19,45;UBERON:0005911,9.27e-18,82;UBERON:0005172,1.56e-15,54;UBERON:0005173,1.56e-15,54;UBERON:0004921,6.72e-14,118;UBERON:0002417,7.15e-14,60;UBERON:0000916,7.15e-14,60;UBERON:0001007,6.35e-13,145;UBERON:0001555,6.35e-13,145;UBERON:0007026,6.35e-13,145;UBERON:0005177,9.05e-12,101;UBERON:0002294,1.05e-11,9;UBERON:0001173,1.05e-11,9;UBERON:0004912,1.05e-11,9;UBERON:0004119,1.56e-11,160;UBERON:0000925,1.56e-11,160;UBERON:0006595,1.56e-11,160;UBERON:0002530,3.77e-11,59;UBERON:0003914,6.05e-10,117;UBERON:0005256,1.79e-09,122;UBERON:0009569,1.45e-08,112;UBERON:0002394,2.61e-08,6;UBERON:0003928,2.61e-08,6;UBERON:0001048,2.88e-08,160;UBERON:0002100,1.50e-07,199;UBERON:0000490,1.56e-07,148;UBERON:0003104,7.55e-07,160;UBERON:0009142,7.55e-07,160|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.0821005894499457,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222820913770347,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0.257640540045629,0,0,0,0,0.0920498986422993,0,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53510069643662,2.94848165003288,0.590789906681404,0,0.368965315629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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C55 | |||
|description=CAGE_peak_at_chr3:115511342..115511357,- | |||
|id=chr3:115511342..115511357,- | |||
|ontology_enrichment_celltype=CL:0000181!4.74e-18!12;CL:0000417!4.74e-18!12;CL:0000668!4.74e-18!12;CL:0000414!4.74e-18!12;CL:0000412!4.74e-18!12;CL:0000182!4.74e-18!12;CL:0000223!2.33e-13!59;CL:0000066!9.28e-09!254;CL:0002150!2.89e-08!3;CL:0000861!2.89e-08!3;CL:0002540!3.22e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000182;5.77e-58;12!CL:0002178;8.13e-16;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,6.00e-58,12;CL:0000223,1.25e-21,58;CL:0002178,7.27e-16,3;CL:0000066,4.74e-09,253 | |||
|ontology_enrichment_development_v019=UBERON:0009497;9.94e-68;13!UBERON:0004161;8.93e-49;11!UBERON:0001041;9.13e-29;30!UBERON:0003104;9.40e-16;31!CL:0000223;4.27e-13;58!UBERON:0006242;1.40e-12;1!UBERON:0006595;8.09e-08;86 | |||
|ontology_enrichment_disease=DOID:305!1.36e-18!106;DOID:0050687!2.62e-13!143;DOID:14566!1.38e-09!239;DOID:299!8.01e-09!25;DOID:162!1.07e-08!235;DOID:7!1.59e-07!39;DOID:3493!5.95e-07!2;DOID:4929!9.79e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:3493;1.50e-23;2!DOID:7;7.49e-16;39!DOID:5662;4.07e-12;1!DOID:299;4.39e-11;25!DOID:4929;6.80e-07;2!DOID:305;8.64e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,1.42e-23,2;DOID:305,1.51e-18,106;DOID:7,2.66e-17,39;DOID:0050687,3.06e-13,143;DOID:5662,4.31e-12,1;DOID:299,4.44e-11,25;DOID:162,3.28e-07,235;DOID:14566,5.12e-07,239;DOID:4929,6.80e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0009497!3.47e-19!25;UBERON:0000015!3.47e-19!25;UBERON:0002423!3.47e-19!25;UBERON:0006235!3.47e-19!25;UBERON:0004161!3.47e-19!25;UBERON:0007499!2.15e-16!25;UBERON:0008835!3.37e-16!22;UBERON:0003894!3.37e-16!22;UBERON:0009856!1.25e-15!26;UBERON:0009854!2.34e-15!23;UBERON:0003929!1.71e-13!54;UBERON:0002107!1.20e-10!19;UBERON:0006925!1.20e-10!19;UBERON:0008836!1.20e-10!19;UBERON:0002294!4.75e-10!7;UBERON:0001173!4.75e-10!7;UBERON:0004912!4.75e-10!7;UBERON:0005911!2.79e-09!82;UBERON:0005172!1.36e-08!55;UBERON:0005173!1.36e-08!55;UBERON:0000077!1.82e-07!130;UBERON:0002417!2.26e-07!61;UBERON:0000916!2.26e-07!61;UBERON:0005057!2.93e-07!26;UBERON:0002394!4.82e-07!4;UBERON:0003928!4.82e-07!4;UBERON:0001007!4.95e-07!155;UBERON:0001555!4.95e-07!155;UBERON:0007026!4.95e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0002423;6.57e-52;25!UBERON:0002107;2.30e-36;19!UBERON:0006925;2.30e-36;19!UBERON:0002365;1.09e-21;31!UBERON:0002330;1.09e-21;31!UBERON:0002368;3.51e-20;33!UBERON:0002294;7.03e-15;7!UBERON:0001173;7.03e-15;7!UBERON:0000949;1.35e-14;43!UBERON:0002394;5.10e-12;4!UBERON:0003928;5.10e-12;4!UBERON:0005172;6.61e-10;52!UBERON:0005173;6.61e-10;52!UBERON:0000945;7.27e-10;5!UBERON:0010039;7.27e-10;5!UBERON:0002530;1.05e-08;57!UBERON:0002417;3.50e-08;58!UBERON:0000916;3.50e-08;58!UBERON:0001007;9.06e-07;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0009497,6.74e-52,25;UBERON:0000015,6.74e-52,25;UBERON:0002423,6.74e-52,25;UBERON:0006235,6.74e-52,25;UBERON:0004161,6.74e-52,25;UBERON:0008835,8.49e-49,22;UBERON:0003894,8.49e-49,22;UBERON:0009854,1.25e-46,23;UBERON:0007499,8.27e-43,25;UBERON:0009856,4.05e-41,26;UBERON:0002107,2.36e-36,19;UBERON:0006925,2.36e-36,19;UBERON:0008836,2.36e-36,19;UBERON:0003929,2.68e-23,54;UBERON:0002365,5.46e-22,31;UBERON:0002330,5.46e-22,31;UBERON:0001041,1.12e-19,87;UBERON:0002368,2.20e-19,35;UBERON:0000949,7.59e-19,45;UBERON:0005911,9.27e-18,82;UBERON:0005172,1.56e-15,54;UBERON:0005173,1.56e-15,54;UBERON:0004921,6.72e-14,118;UBERON:0002417,7.15e-14,60;UBERON:0000916,7.15e-14,60;UBERON:0001007,6.35e-13,145;UBERON:0001555,6.35e-13,145;UBERON:0007026,6.35e-13,145;UBERON:0005177,9.05e-12,101;UBERON:0002294,1.05e-11,9;UBERON:0001173,1.05e-11,9;UBERON:0004912,1.05e-11,9;UBERON:0004119,1.56e-11,160;UBERON:0000925,1.56e-11,160;UBERON:0006595,1.56e-11,160;UBERON:0002530,3.77e-11,59;UBERON:0003914,6.05e-10,117;UBERON:0005256,1.79e-09,122;UBERON:0009569,1.45e-08,112;UBERON:0002394,2.61e-08,6;UBERON:0003928,2.61e-08,6;UBERON:0001048,2.88e-08,160;UBERON:0002100,1.50e-07,199;UBERON:0000490,1.56e-07,148;UBERON:0003104,7.55e-07,160;UBERON:0009142,7.55e-07,160 | |||
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|short_description=p@chr3:115511342..115511357,- | |||
}} |
Revision as of 20:56, 12 September 2013
Short description: | p@chr3:115511342..115511357, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:115511342..115511357, - |
Coexpression cluster: | C55_hepatocellular_Intestinal_liver_Prostate_fibrosarcoma_Hepatocyte_hepatoblastoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 6.00e-58 | 12 |
endodermal cell | 1.25e-21 | 58 |
epithelial cell of stomach | 7.27e-16 | 3 |
epithelial cell | 4.74e-09 | 253 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 1.42e-23 | 2 |
carcinoma | 1.51e-18 | 106 |
disease of anatomical entity | 2.66e-17 | 39 |
cell type cancer | 3.06e-13 | 143 |
pleomorphic carcinoma | 4.31e-12 | 1 |
adenocarcinoma | 4.44e-11 | 25 |
cancer | 3.28e-07 | 235 |
disease of cellular proliferation | 5.12e-07 | 239 |
tubular adenocarcinoma | 6.80e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.