FFCP PHASE1:Hg19::chr3:82035321..82035334,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=|TSSclassifier=S|UniProt=|association_with_transcript=18bp_to_ENST00000494340_5end|coexpression_cluster_id=C4346|description=CAGE_peak_1_at_ENST00000494340_5end|id=chr3:82035321..82035334,+|ontology_enrichment_celltype=CL:0000039!2.28e-24!7;CL:0000586!2.28e-24!7;CL:0002322!3.86e-14!5;CL:0000181!6.60e-14!12;CL:0000417!6.60e-14!12;CL:0000668!6.60e-14!12;CL:0000414!6.60e-14!12;CL:0000412!6.60e-14!12;CL:0000182!6.60e-14!12;CL:0002178!8.05e-07!3|ontology_enrichment_celltype_v019=CL:0000039;2.66e-34;7!CL:0000586;2.66e-34;7!CL:0000182;6.44e-20;12!CL:0002379;1.33e-10;1|ontology_enrichment_celltype_v019_2=CL:0000039,3.62e-34,7;CL:0000586,3.62e-34,7;CL:0000182,5.95e-20,12;CL:0002379,1.21e-10,1|ontology_enrichment_development_v019=UBERON:0009117;5.10e-24;10!UBERON:0005564;5.10e-24;10!UBERON:0004161;9.90e-22;11!UBERON:0009497;2.21e-18;13!UBERON:0001041;6.78e-08;30!UBERON:0003104;1.23e-07;31|ontology_enrichment_disease=DOID:3095!9.69e-13!22;DOID:2994!9.69e-13!22;DOID:162!3.57e-11!235;DOID:14566!8.37e-11!239;DOID:0050687!1.81e-08!143;DOID:305!7.92e-08!106|ontology_enrichment_disease_v019=DOID:3095;1.39e-20;22!DOID:2994;1.39e-20;22!DOID:0060085;1.33e-10;1!DOID:3165;1.33e-10;1!DOID:0060121;1.33e-10;1!DOID:3620;1.33e-10;1!DOID:2438;1.33e-10;1!DOID:4418;1.33e-10;1!DOID:3565;1.33e-10;1!DOID:7;7.93e-07;39|ontology_enrichment_disease_v019_2=DOID:3095,1.62e-20,22;DOID:2994,1.62e-20,22;DOID:162,8.78e-12,235;DOID:14566,1.77e-11,239;DOID:0060085,9.97e-11,1;DOID:3165,9.97e-11,1;DOID:0060121,9.97e-11,1;DOID:2438,9.97e-11,1;DOID:4418,9.97e-11,1;DOID:3620,1.21e-10,1;DOID:3565,1.21e-10,1;DOID:305,2.91e-09,106;DOID:7,2.00e-08,39;DOID:0050687,1.01e-07,143|ontology_enrichment_uberon=UBERON:0000473!1.97e-21!8;UBERON:0003135!2.05e-15!11;UBERON:0000991!3.21e-10!21;UBERON:0009196!3.21e-10!21;UBERON:0009117!3.21e-10!21;UBERON:0005564!3.21e-10!21;UBERON:0004176!1.04e-09!22;UBERON:0000945!2.63e-09!8;UBERON:0010039!2.63e-09!8;UBERON:0002107!1.53e-08!19;UBERON:0006925!1.53e-08!19;UBERON:0008836!1.53e-08!19;UBERON:0005057!4.42e-08!26;UBERON:0003101!2.26e-07!22;UBERON:0000079!2.26e-07!22;UBERON:0008835!2.76e-07!22;UBERON:0003894!2.76e-07!22;UBERON:0009854!6.10e-07!23|ontology_enrichment_uberon_v019=UBERON:0000473;5.08e-30;8!UBERON:0003135;7.80e-22;11!UBERON:0002107;1.50e-12;19!UBERON:0006925;1.50e-12;19!UBERON:0000991;2.14e-11;21!UBERON:0001282;4.15e-11;1!UBERON:0009842;4.15e-11;1!UBERON:0003704;4.15e-11;1!UBERON:0001171;4.15e-11;1!UBERON:0001172;4.15e-11;1!UBERON:0003101;7.14e-11;22!UBERON:0000079;7.14e-11;22!UBERON:0007195;1.33e-10;1!UBERON:0002423;1.66e-09;25!UBERON:0002365;4.08e-07;31!UBERON:0002330;4.08e-07;31|ontology_enrichment_uberon_v019_2=UBERON:0000473,4.93e-30,8;UBERON:0003135,7.64e-22,11;UBERON:0002107,1.43e-12,19;UBERON:0006925,1.43e-12,19;UBERON:0008836,1.43e-12,19;UBERON:0000991,2.11e-11,21;UBERON:0009196,2.11e-11,21;UBERON:0009117,2.11e-11,21;UBERON:0005564,2.11e-11,21;UBERON:0001282,4.15e-11,1;UBERON:0009842,4.15e-11,1;UBERON:0003704,4.15e-11,1;UBERON:0001171,4.15e-11,1;UBERON:0001172,4.15e-11,1;UBERON:0004176,7.07e-11,22;UBERON:0003101,7.07e-11,22;UBERON:0000079,7.07e-11,22;UBERON:0008835,7.69e-11,22;UBERON:0003894,7.69e-11,22;UBERON:0007195,1.61e-10,1;UBERON:0009854,2.31e-10,23;UBERON:0007499,1.60e-09,25;UBERON:0009497,1.60e-09,25;UBERON:0000015,1.60e-09,25;UBERON:0002423,1.60e-09,25;UBERON:0006235,1.60e-09,25;UBERON:0004161,1.60e-09,25;UBERON:0009856,3.77e-09,26;UBERON:0002365,1.20e-07,31;UBERON:0002330,1.20e-07,31;UBERON:0002368,9.43e-07,35|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,9.5244636935622,9.8417487472663,10.5114959278502,0,0,0,0,0,0,0,0,0,0.222886768554957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.52017568590208,0.23056390438806,1.07709173291727,0,0,0,0,0,0,0,0.225595660617181,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=18bp_to_ENST00000494340_5end | |||
|coexpression_cluster_id=C4346 | |||
|description=CAGE_peak_1_at_ENST00000494340_5end | |||
|id=chr3:82035321..82035334,+ | |||
|ontology_enrichment_celltype=CL:0000039!2.28e-24!7;CL:0000586!2.28e-24!7;CL:0002322!3.86e-14!5;CL:0000181!6.60e-14!12;CL:0000417!6.60e-14!12;CL:0000668!6.60e-14!12;CL:0000414!6.60e-14!12;CL:0000412!6.60e-14!12;CL:0000182!6.60e-14!12;CL:0002178!8.05e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000039;2.66e-34;7!CL:0000586;2.66e-34;7!CL:0000182;6.44e-20;12!CL:0002379;1.33e-10;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,3.62e-34,7;CL:0000586,3.62e-34,7;CL:0000182,5.95e-20,12;CL:0002379,1.21e-10,1 | |||
|ontology_enrichment_development_v019=UBERON:0009117;5.10e-24;10!UBERON:0005564;5.10e-24;10!UBERON:0004161;9.90e-22;11!UBERON:0009497;2.21e-18;13!UBERON:0001041;6.78e-08;30!UBERON:0003104;1.23e-07;31 | |||
|ontology_enrichment_disease=DOID:3095!9.69e-13!22;DOID:2994!9.69e-13!22;DOID:162!3.57e-11!235;DOID:14566!8.37e-11!239;DOID:0050687!1.81e-08!143;DOID:305!7.92e-08!106 | |||
|ontology_enrichment_disease_v019=DOID:3095;1.39e-20;22!DOID:2994;1.39e-20;22!DOID:0060085;1.33e-10;1!DOID:3165;1.33e-10;1!DOID:0060121;1.33e-10;1!DOID:3620;1.33e-10;1!DOID:2438;1.33e-10;1!DOID:4418;1.33e-10;1!DOID:3565;1.33e-10;1!DOID:7;7.93e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.62e-20,22;DOID:2994,1.62e-20,22;DOID:162,8.78e-12,235;DOID:14566,1.77e-11,239;DOID:0060085,9.97e-11,1;DOID:3165,9.97e-11,1;DOID:0060121,9.97e-11,1;DOID:2438,9.97e-11,1;DOID:4418,9.97e-11,1;DOID:3620,1.21e-10,1;DOID:3565,1.21e-10,1;DOID:305,2.91e-09,106;DOID:7,2.00e-08,39;DOID:0050687,1.01e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0000473!1.97e-21!8;UBERON:0003135!2.05e-15!11;UBERON:0000991!3.21e-10!21;UBERON:0009196!3.21e-10!21;UBERON:0009117!3.21e-10!21;UBERON:0005564!3.21e-10!21;UBERON:0004176!1.04e-09!22;UBERON:0000945!2.63e-09!8;UBERON:0010039!2.63e-09!8;UBERON:0002107!1.53e-08!19;UBERON:0006925!1.53e-08!19;UBERON:0008836!1.53e-08!19;UBERON:0005057!4.42e-08!26;UBERON:0003101!2.26e-07!22;UBERON:0000079!2.26e-07!22;UBERON:0008835!2.76e-07!22;UBERON:0003894!2.76e-07!22;UBERON:0009854!6.10e-07!23 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;5.08e-30;8!UBERON:0003135;7.80e-22;11!UBERON:0002107;1.50e-12;19!UBERON:0006925;1.50e-12;19!UBERON:0000991;2.14e-11;21!UBERON:0001282;4.15e-11;1!UBERON:0009842;4.15e-11;1!UBERON:0003704;4.15e-11;1!UBERON:0001171;4.15e-11;1!UBERON:0001172;4.15e-11;1!UBERON:0003101;7.14e-11;22!UBERON:0000079;7.14e-11;22!UBERON:0007195;1.33e-10;1!UBERON:0002423;1.66e-09;25!UBERON:0002365;4.08e-07;31!UBERON:0002330;4.08e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,4.93e-30,8;UBERON:0003135,7.64e-22,11;UBERON:0002107,1.43e-12,19;UBERON:0006925,1.43e-12,19;UBERON:0008836,1.43e-12,19;UBERON:0000991,2.11e-11,21;UBERON:0009196,2.11e-11,21;UBERON:0009117,2.11e-11,21;UBERON:0005564,2.11e-11,21;UBERON:0001282,4.15e-11,1;UBERON:0009842,4.15e-11,1;UBERON:0003704,4.15e-11,1;UBERON:0001171,4.15e-11,1;UBERON:0001172,4.15e-11,1;UBERON:0004176,7.07e-11,22;UBERON:0003101,7.07e-11,22;UBERON:0000079,7.07e-11,22;UBERON:0008835,7.69e-11,22;UBERON:0003894,7.69e-11,22;UBERON:0007195,1.61e-10,1;UBERON:0009854,2.31e-10,23;UBERON:0007499,1.60e-09,25;UBERON:0009497,1.60e-09,25;UBERON:0000015,1.60e-09,25;UBERON:0002423,1.60e-09,25;UBERON:0006235,1.60e-09,25;UBERON:0004161,1.60e-09,25;UBERON:0009856,3.77e-09,26;UBERON:0002365,1.20e-07,31;UBERON:0002330,1.20e-07,31;UBERON:0002368,9.43e-07,35 | |||
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|short_description=p1@ENST00000494340 | |||
}} |
Revision as of 01:27, 13 September 2013
Short description: | p1@ENST00000494340 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ENST00000494340_5end |
Coexpression cluster: | C4346_testicular_acute_hepatocellular_cholangiocellular_hepatoblastoma_teratocarcinoma_gastric |
Association with transcript: | 18bp_to_ENST00000494340_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 3.62e-34 | 7 |
germ cell | 3.62e-34 | 7 |
hepatocyte | 5.95e-20 | 12 |
meningothelial cell | 1.21e-10 | 1 |
Ontology term | p-value | n |
---|---|---|
testis | 4.93e-30 | 8 |
male reproductive organ | 7.64e-22 | 11 |
liver | 1.43e-12 | 19 |
digestive gland | 1.43e-12 | 19 |
liver bud | 1.43e-12 | 19 |
gonad | 2.11e-11 | 21 |
indifferent external genitalia | 2.11e-11 | 21 |
indifferent gonad | 2.11e-11 | 21 |
gonad primordium | 2.11e-11 | 21 |
intralobular bile duct | 4.15e-11 | 1 |
acinus | 4.15e-11 | 1 |
intrahepatic bile duct | 4.15e-11 | 1 |
portal lobule | 4.15e-11 | 1 |
hepatic acinus | 4.15e-11 | 1 |
external genitalia | 7.07e-11 | 22 |
male organism | 7.07e-11 | 22 |
male reproductive system | 7.07e-11 | 22 |
hepatic diverticulum | 7.69e-11 | 22 |
liver primordium | 7.69e-11 | 22 |
stroma of bone marrow | 1.61e-10 | 1 |
digestive tract diverticulum | 2.31e-10 | 23 |
epithelial sac | 1.60e-09 | 25 |
epithelium of foregut-midgut junction | 1.60e-09 | 25 |
anatomical boundary | 1.60e-09 | 25 |
hepatobiliary system | 1.60e-09 | 25 |
foregut-midgut junction | 1.60e-09 | 25 |
septum transversum | 1.60e-09 | 25 |
sac | 3.77e-09 | 26 |
exocrine gland | 1.20e-07 | 31 |
exocrine system | 1.20e-07 | 31 |
endocrine gland | 9.43e-07 | 35 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.62e-20 | 22 |
germ cell cancer | 1.62e-20 | 22 |
cancer | 8.78e-12 | 235 |
disease of cellular proliferation | 1.77e-11 | 239 |
organ system benign neoplasm | 9.97e-11 | 1 |
skin benign neoplasm | 9.97e-11 | 1 |
integumentary system benign neoplasm | 9.97e-11 | 1 |
dermis tumor | 9.97e-11 | 1 |
cutaneous fibrous histiocytoma | 9.97e-11 | 1 |
central nervous system cancer | 1.21e-10 | 1 |
meningioma | 1.21e-10 | 1 |
carcinoma | 2.91e-09 | 106 |
disease of anatomical entity | 2.00e-08 | 39 |
cell type cancer | 1.01e-07 | 143 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.