FFCP PHASE1:Hg19::chr6:125524852..125524861,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7164|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=12006|TSSclassifier=N|UniProt=|association_with_transcript=-3bp_to_uc003pzz.1_5end|coexpression_cluster_id=C42|description=CAGE_peak_7_at_TPD52L1_5end|id=chr6:125524852..125524861,+|ontology_enrichment_celltype=CL:0000066!1.80e-08!254|ontology_enrichment_celltype_v019=CL:0000159;8.34e-16;2!CL:0000082;2.31e-13;19!CL:0002579;3.01e-10;3!CL:0000313;8.45e-09;1!CL:0000319;1.02e-08;1|ontology_enrichment_celltype_v019_2=CL:0000159,8.66e-16,2;CL:0000082,2.29e-13,19;CL:0002579,3.64e-10,3;CL:0000313,8.78e-09,1;CL:0000319,1.02e-08,1|ontology_enrichment_development_v019=UBERON:0001041;2.18e-14;30!UBERON:0008947;1.42e-08;29|ontology_enrichment_disease=DOID:305!4.58e-11!106;DOID:0050687!2.43e-10!143;DOID:5093!2.89e-07!4;DOID:1612!2.89e-07!4|ontology_enrichment_disease_v019=DOID:0050615;1.31e-21;16!DOID:5093;1.46e-17;4!DOID:1612;1.46e-17;4!DOID:1324;4.68e-17;15!DOID:299;9.84e-14;25!DOID:0050619;8.45e-09;1!DOID:2152;8.45e-09;1!DOID:1357;8.45e-09;1!DOID:3030;1.02e-08;1|ontology_enrichment_disease_v019_2=DOID:0050615,1.27e-21,16;DOID:5093,1.50e-17,4;DOID:1612,1.50e-17,4;DOID:1324,4.62e-17,15;DOID:299,9.95e-14,25;DOID:0050687,6.13e-13,143;DOID:305,1.44e-12,106;DOID:162,1.54e-09,235;DOID:14566,2.93e-09,239;DOID:0050619,8.15e-09,1;DOID:1357,8.15e-09,1;DOID:2152,8.78e-09,1;DOID:3030,1.02e-08,1|ontology_enrichment_uberon=UBERON:0000310!4.89e-07!10|ontology_enrichment_uberon_v019=UBERON:0004802;2.31e-13;19!UBERON:0000115;2.31e-13;19!UBERON:0002048;1.80e-11;22!UBERON:0004807;1.80e-11;22!UBERON:0000117;1.80e-11;22!UBERON:0000171;1.80e-11;22!UBERON:0000170;1.80e-11;22!UBERON:0004911;8.45e-09;1!UBERON:0001764;8.45e-09;1!UBERON:0001825;8.45e-09;1!UBERON:0000915;1.80e-07;52!UBERON:0000310;2.60e-07;10!UBERON:0005178;7.68e-07;34!UBERON:0002224;7.68e-07;34|ontology_enrichment_uberon_v019_2=UBERON:0004802,2.29e-13,19;UBERON:0000115,2.29e-13,19;UBERON:0002048,1.79e-11,22;UBERON:0000117,1.79e-11,22;UBERON:0000171,1.79e-11,22;UBERON:0000170,1.79e-11,22;UBERON:0005597,1.79e-11,22;UBERON:0000118,1.79e-11,22;UBERON:0000915,4.59e-10,52;UBERON:0004807,6.68e-09,28;UBERON:0001764,8.15e-09,1;UBERON:0001825,8.15e-09,1;UBERON:0004911,8.78e-09,1;UBERON:0000310,2.63e-07,10;UBERON:0005178,3.10e-07,34;UBERON:0002224,3.10e-07,34;UBERON:0009569,4.06e-07,112;UBERON:0005181,5.18e-07,35|phase1_expression=0.363356758541113,0,0.563817616383885,0,0.446961094427288,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0.32389366601898,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,1.50401373190767,1.88300474649071,0,0.486634870302636,0.0945348171640679,0,0,0.130979075497713,0,0,0,0.348259474598534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30648779579902,0,0,0,0.213557388818567,0,0,0,0,0.558350568994769,0,0,0,0,0.161646056818812,0,0.201504196455281,0,0,0,0.286804595389004,0,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0.441175890929576,0.653638332277218,0.237270619111097,0.269662616320329,0.784885860501384,0,0,0,0,0,0,0,0,0,0.368965315629341,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,11.0628615714299,12.0188062693282,0.246217006087397,0,0.148631162288728,0.93733833986777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.723906533337896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0.315404830067869,0.468565659970853,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0.496215615637554,0.306923946576125,0,1.02511319404561,1.53512174720011,0.482561763430822,0,0,0,0,0,0,0.725156697549733,0,0.184161977871793,0,0,0,0,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0.309123034943167,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0.178064071293475,0.330569830721956,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282810863907425,0,0,0,0,0,0,0.202910376962704,0,0,0,0,0,0,0.844430541190656,0.329294892959902,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0,0,0.23874448473769,0.296964680832639,2.15012491469462,0,0,0,0,0,0,0,0,0,0,0,0,8.23497403507802,0,0.0986434056369336,0,0,0.969332746095218,0.371072392647405,0,20.8342208868187,0.262379999988587,0,0.1137934482855,0.762760950878299,1.41832609060762,0,0,0,0,0,0,0,0,0,0.32681539055697,0.83654246567162,0,0,1.61394733071642,0.718061155278177,1.19512109114209,0,0.0915975934018623,0,0,0,0,0.225595660617181,0,0.335643173951685,0,0,0,4.08082020397869,0.282706142867882,0,0,0,0,0,0,0,0.404406797884062,0,0,0,0,0.242780379534093,0,0,0,0,0,0,0,0,0,0,0.853828638089378,0,0,0,0.522355239482415,0,0,0.0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7164 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12006 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-3bp_to_uc003pzz.1_5end | |||
|coexpression_cluster_id=C42 | |||
|description=CAGE_peak_7_at_TPD52L1_5end | |||
|id=chr6:125524852..125524861,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.80e-08!254 | |||
|ontology_enrichment_celltype_v019=CL:0000159;8.34e-16;2!CL:0000082;2.31e-13;19!CL:0002579;3.01e-10;3!CL:0000313;8.45e-09;1!CL:0000319;1.02e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000159,8.66e-16,2;CL:0000082,2.29e-13,19;CL:0002579,3.64e-10,3;CL:0000313,8.78e-09,1;CL:0000319,1.02e-08,1 | |||
|ontology_enrichment_development_v019=UBERON:0001041;2.18e-14;30!UBERON:0008947;1.42e-08;29 | |||
|ontology_enrichment_disease=DOID:305!4.58e-11!106;DOID:0050687!2.43e-10!143;DOID:5093!2.89e-07!4;DOID:1612!2.89e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:0050615;1.31e-21;16!DOID:5093;1.46e-17;4!DOID:1612;1.46e-17;4!DOID:1324;4.68e-17;15!DOID:299;9.84e-14;25!DOID:0050619;8.45e-09;1!DOID:2152;8.45e-09;1!DOID:1357;8.45e-09;1!DOID:3030;1.02e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0050615,1.27e-21,16;DOID:5093,1.50e-17,4;DOID:1612,1.50e-17,4;DOID:1324,4.62e-17,15;DOID:299,9.95e-14,25;DOID:0050687,6.13e-13,143;DOID:305,1.44e-12,106;DOID:162,1.54e-09,235;DOID:14566,2.93e-09,239;DOID:0050619,8.15e-09,1;DOID:1357,8.15e-09,1;DOID:2152,8.78e-09,1;DOID:3030,1.02e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0000310!4.89e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0004802;2.31e-13;19!UBERON:0000115;2.31e-13;19!UBERON:0002048;1.80e-11;22!UBERON:0004807;1.80e-11;22!UBERON:0000117;1.80e-11;22!UBERON:0000171;1.80e-11;22!UBERON:0000170;1.80e-11;22!UBERON:0004911;8.45e-09;1!UBERON:0001764;8.45e-09;1!UBERON:0001825;8.45e-09;1!UBERON:0000915;1.80e-07;52!UBERON:0000310;2.60e-07;10!UBERON:0005178;7.68e-07;34!UBERON:0002224;7.68e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004802,2.29e-13,19;UBERON:0000115,2.29e-13,19;UBERON:0002048,1.79e-11,22;UBERON:0000117,1.79e-11,22;UBERON:0000171,1.79e-11,22;UBERON:0000170,1.79e-11,22;UBERON:0005597,1.79e-11,22;UBERON:0000118,1.79e-11,22;UBERON:0000915,4.59e-10,52;UBERON:0004807,6.68e-09,28;UBERON:0001764,8.15e-09,1;UBERON:0001825,8.15e-09,1;UBERON:0004911,8.78e-09,1;UBERON:0000310,2.63e-07,10;UBERON:0005178,3.10e-07,34;UBERON:0002224,3.10e-07,34;UBERON:0009569,4.06e-07,112;UBERON:0005181,5.18e-07,35 | |||
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|short_description=p7@TPD52L1 | |||
}} |
Revision as of 17:48, 13 September 2013
Short description: | p7@TPD52L1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_TPD52L1_5end |
Coexpression cluster: | C42_small_lung_maxillary_pharyngeal_Mesenchymal_Wilms_colon |
Association with transcript: | -3bp_to_uc003pzz.1_5end |
EntrezGene: | TPD52L1 |
HGNC: | 12006 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
seromucus secreting cell | 8.66e-16 | 2 |
epithelial cell of lung | 2.29e-13 | 19 |
omentum preadipocyte | 3.64e-10 | 3 |
serous secreting cell | 8.78e-09 | 1 |
mucus secreting cell | 1.02e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
respiratory tract epithelium | 2.29e-13 | 19 |
lung epithelium | 2.29e-13 | 19 |
lung | 1.79e-11 | 22 |
respiratory tube | 1.79e-11 | 22 |
respiration organ | 1.79e-11 | 22 |
pair of lungs | 1.79e-11 | 22 |
lung primordium | 1.79e-11 | 22 |
lung bud | 1.79e-11 | 22 |
thoracic segment of trunk | 4.59e-10 | 52 |
respiratory system epithelium | 6.68e-09 | 28 |
maxillary sinus | 8.15e-09 | 1 |
paranasal sinus | 8.15e-09 | 1 |
epithelium of female gonad | 8.78e-09 | 1 |
breast | 2.63e-07 | 10 |
thoracic cavity element | 3.10e-07 | 34 |
thoracic cavity | 3.10e-07 | 34 |
subdivision of trunk | 4.06e-07 | 112 |
thoracic segment organ | 5.18e-07 | 35 |
Ontology term | p-value | n |
---|---|---|
respiratory system cancer | 1.27e-21 | 16 |
thoracic cancer | 1.50e-17 | 4 |
breast cancer | 1.50e-17 | 4 |
lung cancer | 4.62e-17 | 15 |
adenocarcinoma | 9.95e-14 | 25 |
cell type cancer | 6.13e-13 | 143 |
carcinoma | 1.44e-12 | 106 |
cancer | 1.54e-09 | 235 |
disease of cellular proliferation | 2.93e-09 | 239 |
paranasal sinus cancer | 8.15e-09 | 1 |
maxillary sinus cancer | 8.15e-09 | 1 |
ovary epithelial cancer | 8.78e-09 | 1 |
mucinous adenocarcinoma | 1.02e-08 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.