FFCP PHASE1:Hg19::chr6:33589135..33589157,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3710|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=6182|TSSclassifier=S|UniProt=A6H8K3,Q14573,Q59ES2|association_with_transcript=0bp_to_NM_002224_5end|description=CAGE_peak_2_at_ITPR3_5end|id=chr6:33589135..33589157,+|ontology_enrichment_celltype=CL:0000066!4.59e-36!254;CL:0000838!1.61e-13!52;CL:0000542!1.76e-13!53;CL:0000051!1.76e-13!53;CL:0000076!1.49e-11!62;CL:0002076!2.19e-11!43;CL:0000223!5.36e-10!59;CL:0000945!2.95e-07!24;CL:0000826!2.95e-07!24|ontology_enrichment_celltype_v019=CL:0002076;2.26e-09;42!CL:0000542;3.45e-08;53!CL:0000945;4.05e-07;24!CL:0002251;6.89e-07;20|ontology_enrichment_celltype_v019_2=CL:0000066,4.17e-38,253;CL:0000838,1.61e-14,52;CL:0000542,1.77e-14,53;CL:0000051,1.77e-14,53;CL:0000076,2.56e-12,63;CL:0002076,4.90e-12,42;CL:0000223,1.23e-10,58;CL:0000945,1.30e-07,24;CL:0000826,1.30e-07,24;CL:0002251,6.10e-07,20;CL:0000084,8.26e-07,25;CL:0000827,8.26e-07,25|ontology_enrichment_development_v019=CL:0000051;3.45e-08;53|ontology_enrichment_disease=DOID:305!6.76e-20!106;DOID:0050687!1.04e-14!143;DOID:162!1.86e-12!235;DOID:14566!1.98e-12!239;DOID:1749!1.65e-07!14|ontology_enrichment_disease_v019=DOID:1749;1.51e-08;14|ontology_enrichment_disease_v019_2=DOID:305,2.88e-22,106;DOID:0050687,2.77e-16,143;DOID:162,4.52e-14,235;DOID:14566,6.72e-14,239;DOID:1749,2.61e-08,14;DOID:299,8.44e-07,25|ontology_enrichment_uberon=UBERON:0004119!2.90e-14!169;UBERON:0000925!2.90e-14!169;UBERON:0006595!2.90e-14!169;UBERON:0001007!4.64e-11!155;UBERON:0001555!4.64e-11!155;UBERON:0007026!4.64e-11!155;UBERON:0000464!5.27e-10!104;UBERON:0001004!1.95e-09!72;UBERON:0000077!9.34e-09!130;UBERON:0004921!1.20e-08!129;UBERON:0004185!1.20e-08!129;UBERON:0000065!8.29e-08!53;UBERON:0000466!1.51e-07!126;UBERON:0001041!2.11e-07!98|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.53e-12,160;UBERON:0000925,2.53e-12,160;UBERON:0006595,2.53e-12,160;UBERON:0001007,2.28e-09,145;UBERON:0001555,2.28e-09,145;UBERON:0007026,2.28e-09,145;UBERON:0001004,1.13e-08,74;UBERON:0004921,7.57e-08,118;UBERON:0000065,2.31e-07,54;UBERON:0005911,4.01e-07,82;UBERON:0001041,7.43e-07,87|phase1_expression=0.181678379270557,0.214100523890983,0,0,0,0,0,0.631719873426831,0.261185628199839,1.72013755551056,5.58240934377942,6.77168253603534,5.80287352102598,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0.313454721478088,0.572471974262113,0.273748850145768,0,3.43860325865781,2.70931945184821,1.81034797021462,0.393364276848904,3.0706351847777,1.23852898652861,0.919421224478927,6.024118375565,4.80680213216824,8.21152326151197,3.9807385096478,0.880801318004542,0.553995408531877,1.60435557976113,0.217010870715852,0,0.32389366601898,0,0,0.377875943688809,0,0,0,0,0,0.256160706529101,0,0.344745680736619,0,0,0,0.272906150057846,0.224723484445085,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0.32145117339416,0,0,0,3.51992488922645,3.82297027883492,1.77901850772711,3.41384178053206,5.20514783146816,2.29900975981793,4.62731410949403,2.86216126360609,3.41527781465669,5.87237189370939,6.11637165000366,0,0.560508562981536,0,5.31116379307349,4.71612915298998,5.75684197198626,1.00311897234407,2.28145586643513,1.89379122293893,7.79306913631645,1.55974639639243,2.06224135232386,2.65840673500345,3.79125409271022,2.17755243533648,3.51160238411671,2.95988228286617,1.38175008892924,1.44901542867526,2.37258501059297,2.40786745280742,5.22677619024884,2.03956816855619,3.83220493601921,3.4362744548263,3.79529538029254,2.54852331459277,3.90650072313851,0.950452044448374,1.6563263098555,1.66382594500744,4.99722906209383,2.36777252044017,2.46338399076314,4.23374160771938,7.2208852861547,5.35850294366356,0,0.670700859703636,1.02290049474824,0.361439152384566,0.50133791063589,0.579386075843295,0.795285947051099,0.486634870302636,0.567208902984407,0.443458794925128,0.790513071238134,1.44076983047484,6.55731518926576,2.22470665670658,0,0,0.132957960518865,0,0,0.371457501329565,1.78886166630035,1.72046919021225,2.08284300964557,2.82653970962005,4.61449379830897,3.02629846134074,2.08994966536811,2.84258435086262,2.84613010149368,0.66944122552934,1.61131726843659,0.760272105718513,3.90499292077071,1.10298924103761,1.62028389576352,1.69669483739752,2.69435247151404,1.57656072676651,3.06633274931766,1.89853131913626,2.93122790288652,0,0,4.79703457356788,0,0.379891534993739,1.05927344650575,1.14734648299525,1.41867352879343,0,0,0.24666754841716,0.311211035399766,0.67355336034844,0.817309515567294,0,0,1.64025002283658,2.18512053781224,1.1409436430889,2.09228152772521,0.704606991862589,0.647491777472526,0.561803226808994,0.408308342509787,1.35117749042945,0.516628905878827,0,0.494533858557114,1.82032272387605,0.718618141816238,0.505008341862199,1.00094815897571,1.38532057742091,0.877955241761676,0.612975591598039,0.600952235626387,0.113432183160021,0.358779271377724,0.213557388818567,0,0.900273288253207,0.103052529238439,0,0,1.5189869901714,0.194874010322397,0.252433774244115,0.092049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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3710 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=6182 | |||
|TSSclassifier=S | |||
|UniProt=A6H8K3,Q14573,Q59ES2 | |||
|association_with_transcript=0bp_to_NM_002224_5end | |||
|description=CAGE_peak_2_at_ITPR3_5end | |||
|id=chr6:33589135..33589157,+ | |||
|ontology_enrichment_celltype=CL:0000066!4.59e-36!254;CL:0000838!1.61e-13!52;CL:0000542!1.76e-13!53;CL:0000051!1.76e-13!53;CL:0000076!1.49e-11!62;CL:0002076!2.19e-11!43;CL:0000223!5.36e-10!59;CL:0000945!2.95e-07!24;CL:0000826!2.95e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.26e-09;42!CL:0000542;3.45e-08;53!CL:0000945;4.05e-07;24!CL:0002251;6.89e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.17e-38,253;CL:0000838,1.61e-14,52;CL:0000542,1.77e-14,53;CL:0000051,1.77e-14,53;CL:0000076,2.56e-12,63;CL:0002076,4.90e-12,42;CL:0000223,1.23e-10,58;CL:0000945,1.30e-07,24;CL:0000826,1.30e-07,24;CL:0002251,6.10e-07,20;CL:0000084,8.26e-07,25;CL:0000827,8.26e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000051;3.45e-08;53 | |||
|ontology_enrichment_disease=DOID:305!6.76e-20!106;DOID:0050687!1.04e-14!143;DOID:162!1.86e-12!235;DOID:14566!1.98e-12!239;DOID:1749!1.65e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.51e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.88e-22,106;DOID:0050687,2.77e-16,143;DOID:162,4.52e-14,235;DOID:14566,6.72e-14,239;DOID:1749,2.61e-08,14;DOID:299,8.44e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.90e-14!169;UBERON:0000925!2.90e-14!169;UBERON:0006595!2.90e-14!169;UBERON:0001007!4.64e-11!155;UBERON:0001555!4.64e-11!155;UBERON:0007026!4.64e-11!155;UBERON:0000464!5.27e-10!104;UBERON:0001004!1.95e-09!72;UBERON:0000077!9.34e-09!130;UBERON:0004921!1.20e-08!129;UBERON:0004185!1.20e-08!129;UBERON:0000065!8.29e-08!53;UBERON:0000466!1.51e-07!126;UBERON:0001041!2.11e-07!98 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.53e-12,160;UBERON:0000925,2.53e-12,160;UBERON:0006595,2.53e-12,160;UBERON:0001007,2.28e-09,145;UBERON:0001555,2.28e-09,145;UBERON:0007026,2.28e-09,145;UBERON:0001004,1.13e-08,74;UBERON:0004921,7.57e-08,118;UBERON:0000065,2.31e-07,54;UBERON:0005911,4.01e-07,82;UBERON:0001041,7.43e-07,87 | |||
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| |||
|short_description=p2@ITPR3 | |||
}} |
Revision as of 20:34, 13 September 2013
Short description: | p2@ITPR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_ITPR3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_002224_5end |
EntrezGene: | ITPR3 |
HGNC: | 6182 |
UniProt: | A6H8K3Q14573Q59ES2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.17e-38 | 253 |
lymphoid lineage restricted progenitor cell | 1.61e-14 | 52 |
lymphocyte | 1.77e-14 | 53 |
common lymphoid progenitor | 1.77e-14 | 53 |
squamous epithelial cell | 2.56e-12 | 63 |
endo-epithelial cell | 4.90e-12 | 42 |
endodermal cell | 1.23e-10 | 58 |
lymphocyte of B lineage | 1.30e-07 | 24 |
pro-B cell | 1.30e-07 | 24 |
epithelial cell of alimentary canal | 6.10e-07 | 20 |
T cell | 8.26e-07 | 25 |
pro-T cell | 8.26e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 2.53e-12 | 160 |
endoderm | 2.53e-12 | 160 |
presumptive endoderm | 2.53e-12 | 160 |
digestive system | 2.28e-09 | 145 |
digestive tract | 2.28e-09 | 145 |
primitive gut | 2.28e-09 | 145 |
respiratory system | 1.13e-08 | 74 |
subdivision of digestive tract | 7.57e-08 | 118 |
respiratory tract | 2.31e-07 | 54 |
endo-epithelium | 4.01e-07 | 82 |
foregut | 7.43e-07 | 87 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.88e-22 | 106 |
cell type cancer | 2.77e-16 | 143 |
cancer | 4.52e-14 | 235 |
disease of cellular proliferation | 6.72e-14 | 239 |
squamous cell carcinoma | 2.61e-08 | 14 |
adenocarcinoma | 8.44e-07 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.