FFCP PHASE1:Hg19::chr7:27153428..27153440,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3200|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=5104|TSSclassifier=S|UniProt=F2Z3A4|association_with_transcript=23bp_to_ENST00000522456_5end|coexpression_cluster_id=C2890|description=CAGE_peak_3_at_HOXA3_5end|id=chr7:27153428..27153440,-|ontology_enrichment_celltype=CL:0000066!1.33e-16!254;CL:0000076!7.89e-15!62;CL:0000222!3.25e-14!119;CL:1000449!4.13e-14!16;CL:1000497!4.18e-13!18;CL:0002518!4.18e-13!18;CL:1000507!2.77e-11!12;CL:1000494!2.77e-11!12;CL:0002681!3.94e-11!13;CL:0002584!3.94e-11!13;CL:0000213!1.68e-10!57;CL:0000215!1.68e-10!57;CL:0000220!7.39e-10!246;CL:0002321!1.45e-09!248;CL:0000077!2.59e-09!19;CL:0002078!9.77e-07!44|ontology_enrichment_celltype_v019=CL:1000449;6.63e-21;15!CL:1000507;3.04e-19;10!CL:1000494;3.04e-19;10!CL:1000497;4.44e-18;17!CL:0002518;4.44e-18;17!CL:0002681;2.05e-14;12!CL:0002584;2.05e-14;12!CL:0000077;7.92e-09;19!CL:1000746;3.34e-08;7!CL:1000612;3.34e-08;7|ontology_enrichment_celltype_v019_2=CL:1000449,4.43e-21,15;CL:1000507,1.82e-19,10;CL:1000494,1.82e-19,10;CL:1000497,3.13e-18,17;CL:0002518,3.13e-18,17;CL:0002681,1.49e-14,12;CL:0002584,1.49e-14,12;CL:0000066,9.46e-09,253;CL:0000077,9.53e-09,19;CL:1000746,3.29e-08,7;CL:1000612,3.29e-08,7|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:305!1.25e-10!106;DOID:0050687!1.91e-09!143;DOID:1749!8.03e-08!14;DOID:162!9.86e-08!235;DOID:14566!2.29e-07!239|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:162,6.01e-07,235|ontology_enrichment_uberon=UBERON:0005177!1.18e-19!107;UBERON:0002100!7.62e-17!216;UBERON:0000466!2.74e-16!126;UBERON:0003104!2.93e-16!238;UBERON:0009142!2.93e-16!238;UBERON:0000464!1.27e-15!104;UBERON:0003914!2.32e-15!118;UBERON:0003886!3.81e-15!63;UBERON:0009569!2.96e-14!113;UBERON:0004211!4.13e-14!16;UBERON:0001285!4.13e-14!16;UBERON:0007684!4.13e-14!16;UBERON:0003220!4.13e-14!16;UBERON:0004208!4.13e-14!16;UBERON:0003064!4.68e-13!37;UBERON:0005172!5.71e-13!55;UBERON:0005173!5.71e-13!55;UBERON:0002417!5.87e-13!61;UBERON:0000916!5.87e-13!61;UBERON:0006555!6.63e-13!17;UBERON:0005103!6.63e-13!17;UBERON:0000083!6.63e-13!17;UBERON:0009201!6.63e-13!17;UBERON:0004819!6.63e-13!17;UBERON:0006553!6.63e-13!17;UBERON:0003074!6.63e-13!17;UBERON:0003060!6.63e-13!17;UBERON:0001851!6.87e-13!16;UBERON:0000489!2.38e-12!32;UBERON:0002553!3.65e-12!70;UBERON:0002113!5.14e-12!27;UBERON:0003918!5.14e-12!27;UBERON:0005095!5.14e-12!27;UBERON:0007687!5.14e-12!27;UBERON:0000080!7.70e-12!18;UBERON:0002120!7.70e-12!18;UBERON:0004875!7.70e-12!18;UBERON:0005721!7.70e-12!18;UBERON:0005754!7.70e-12!18;UBERON:0007297!7.70e-12!18;UBERON:0003887!2.09e-11!21;UBERON:0001008!2.60e-11!45;UBERON:0009773!2.77e-11!12;UBERON:0001231!2.77e-11!12;UBERON:0004810!2.77e-11!12;UBERON:0001225!3.94e-11!13;UBERON:0008987!3.94e-11!13;UBERON:0006554!7.86e-11!44;UBERON:0005256!1.06e-10!143;UBERON:0000353!3.64e-10!17;UBERON:0000058!4.32e-10!26;UBERON:0004876!4.75e-10!20;UBERON:0000481!6.36e-10!347;UBERON:0000490!6.46e-10!138;UBERON:0000926!1.05e-09!448;UBERON:0004120!1.05e-09!448;UBERON:0006603!1.05e-09!448;UBERON:0004111!1.76e-09!241;UBERON:0000483!2.04e-09!309;UBERON:0000025!2.15e-09!194;UBERON:0004921!2.58e-09!129;UBERON:0004185!2.58e-09!129;UBERON:0000119!4.92e-09!312;UBERON:0001007!2.81e-08!155;UBERON:0001555!2.81e-08!155;UBERON:0007026!2.81e-08!155;UBERON:0000077!5.48e-08!130;UBERON:0000475!7.80e-08!365;UBERON:0004119!2.56e-07!169;UBERON:0000925!2.56e-07!169;UBERON:0006595!2.56e-07!169;UBERON:0001981!3.58e-07!60;UBERON:0007500!3.58e-07!60;UBERON:0004537!3.58e-07!60;UBERON:0006965!3.58e-07!60;UBERON:0000477!4.00e-07!286;UBERON:0003103!6.44e-07!69|ontology_enrichment_uberon_v019=UBERON:0006555;6.63e-21;15!UBERON:0004819;6.63e-21;15!UBERON:0001285;6.63e-21;15!UBERON:0007684;6.63e-21;15!UBERON:0004211;3.04e-19;10!UBERON:0009773;3.04e-19;10!UBERON:0001231;3.04e-19;10!UBERON:0004810;3.04e-19;10!UBERON:0001225;2.05e-14;12!UBERON:0008987;2.05e-14;12!UBERON:0002113;5.69e-14;24!UBERON:0011143;5.69e-14;24!UBERON:0001851;1.15e-13;15!UBERON:0000353;1.15e-13;15!UBERON:0000489;6.47e-13;29!UBERON:0006554;2.30e-12;30!UBERON:0001008;2.30e-12;30!UBERON:0000074;3.34e-08;7!UBERON:0001229;3.34e-08;7!UBERON:0005172;5.38e-08;52!UBERON:0005173;5.38e-08;52!UBERON:0005177;8.36e-08;99|ontology_enrichment_uberon_v019_2=UBERON:0004211,4.43e-21,15;UBERON:0009773,4.43e-21,15;UBERON:0001231,4.43e-21,15;UBERON:0001285,4.43e-21,15;UBERON:0007684,4.43e-21,15;UBERON:0004208,4.43e-21,15;UBERON:0006555,1.45e-19,16;UBERON:0004819,1.45e-19,16;UBERON:0004810,1.82e-19,10;UBERON:0001225,1.49e-14,12;UBERON:0008987,1.49e-14,12;UBERON:0000353,8.60e-14,15;UBERON:0001851,1.13e-13,15;UBERON:0002113,1.02e-12,26;UBERON:0003918,1.02e-12,26;UBERON:0011143,1.02e-12,26;UBERON:0005095,1.02e-12,26;UBERON:0007687,1.02e-12,26;UBERON:0000489,6.31e-12,31;UBERON:0005177,1.51e-11,101;UBERON:0005172,1.12e-10,54;UBERON:0005173,1.12e-10,54;UBERON:0003914,5.90e-10,117;UBERON:0002417,3.93e-09,60;UBERON:0000916,3.93e-09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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3200 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5104 | |||
|TSSclassifier=S | |||
|UniProt=F2Z3A4 | |||
|association_with_transcript=23bp_to_ENST00000522456_5end | |||
|coexpression_cluster_id=C2890 | |||
|description=CAGE_peak_3_at_HOXA3_5end | |||
|id=chr7:27153428..27153440,- | |||
|ontology_enrichment_celltype=CL:0000066!1.33e-16!254;CL:0000076!7.89e-15!62;CL:0000222!3.25e-14!119;CL:1000449!4.13e-14!16;CL:1000497!4.18e-13!18;CL:0002518!4.18e-13!18;CL:1000507!2.77e-11!12;CL:1000494!2.77e-11!12;CL:0002681!3.94e-11!13;CL:0002584!3.94e-11!13;CL:0000213!1.68e-10!57;CL:0000215!1.68e-10!57;CL:0000220!7.39e-10!246;CL:0002321!1.45e-09!248;CL:0000077!2.59e-09!19;CL:0002078!9.77e-07!44 | |||
|ontology_enrichment_celltype_v019=CL:1000449;6.63e-21;15!CL:1000507;3.04e-19;10!CL:1000494;3.04e-19;10!CL:1000497;4.44e-18;17!CL:0002518;4.44e-18;17!CL:0002681;2.05e-14;12!CL:0002584;2.05e-14;12!CL:0000077;7.92e-09;19!CL:1000746;3.34e-08;7!CL:1000612;3.34e-08;7 | |||
|ontology_enrichment_celltype_v019_2=CL:1000449,4.43e-21,15;CL:1000507,1.82e-19,10;CL:1000494,1.82e-19,10;CL:1000497,3.13e-18,17;CL:0002518,3.13e-18,17;CL:0002681,1.49e-14,12;CL:0002584,1.49e-14,12;CL:0000066,9.46e-09,253;CL:0000077,9.53e-09,19;CL:1000746,3.29e-08,7;CL:1000612,3.29e-08,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!1.25e-10!106;DOID:0050687!1.91e-09!143;DOID:1749!8.03e-08!14;DOID:162!9.86e-08!235;DOID:14566!2.29e-07!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,6.01e-07,235 | |||
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|ontology_enrichment_uberon_v019=UBERON:0006555;6.63e-21;15!UBERON:0004819;6.63e-21;15!UBERON:0001285;6.63e-21;15!UBERON:0007684;6.63e-21;15!UBERON:0004211;3.04e-19;10!UBERON:0009773;3.04e-19;10!UBERON:0001231;3.04e-19;10!UBERON:0004810;3.04e-19;10!UBERON:0001225;2.05e-14;12!UBERON:0008987;2.05e-14;12!UBERON:0002113;5.69e-14;24!UBERON:0011143;5.69e-14;24!UBERON:0001851;1.15e-13;15!UBERON:0000353;1.15e-13;15!UBERON:0000489;6.47e-13;29!UBERON:0006554;2.30e-12;30!UBERON:0001008;2.30e-12;30!UBERON:0000074;3.34e-08;7!UBERON:0001229;3.34e-08;7!UBERON:0005172;5.38e-08;52!UBERON:0005173;5.38e-08;52!UBERON:0005177;8.36e-08;99 | |||
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| |||
|short_description=p3@HOXA3 | |||
}} |
Revision as of 00:43, 14 September 2013
Short description: | p3@HOXA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_HOXA3_5end |
Coexpression cluster: | C2890_Smooth_glioma_clear_Renal_endometrial_mesothelioma_gastric |
Association with transcript: | 23bp_to_ENST00000522456_5end |
EntrezGene: | HOXA3 |
HGNC: | 5104 |
UniProt: | F2Z3A4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of nephron | 4.43e-21 | 15 |
kidney tubule cell | 1.82e-19 | 10 |
nephron tubule epithelial cell | 1.82e-19 | 10 |
kidney cell | 3.13e-18 | 17 |
kidney epithelial cell | 3.13e-18 | 17 |
kidney cortical cell | 1.49e-14 | 12 |
renal cortical epithelial cell | 1.49e-14 | 12 |
epithelial cell | 9.46e-09 | 253 |
mesothelial cell | 9.53e-09 | 19 |
glomerular cell | 3.29e-08 | 7 |
kidney corpuscule cell | 3.29e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
cancer | 6.01e-07 | 235 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.