FFCP PHASE1:Hg19::chr9:130885210..130885213,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C1|description=CAGE_peak_at_chr9:130885210..130885213,-|id=chr9:130885210..130885213,-|ontology_enrichment_celltype=CL:0000071!4.72e-08!18;CL:0002546!4.72e-08!18;CL:0002321!3.59e-07!248;CL:0000220!7.31e-07!246|ontology_enrichment_celltype_v019=CL:0002188;4.19e-11;5!CL:0000307;7.74e-09;3!CL:1000746;4.63e-08;7!CL:1000612;4.63e-08;7!CL:0000071;7.23e-08;18!CL:0000115;7.33e-08;36!CL:0002553;4.83e-07;1|ontology_enrichment_celltype_v019_2=CL:0002188,4.07e-11,5;CL:0000115,3.30e-09,36;CL:0000068,8.09e-09,3;CL:0000069,8.09e-09,3;CL:0000307,8.09e-09,3;CL:0000377,8.09e-09,3;CL:1000746,4.54e-08,7;CL:1000612,4.54e-08,7;CL:0000071,6.02e-08,18;CL:0002546,6.02e-08,18;CL:0002553,2.52e-07,1;CL:0002078,3.96e-07,45|ontology_enrichment_development_v019=CL:0000377;7.74e-09;3!UBERON:0006215;1.44e-08;3!CL:0002546;7.23e-08;18!UBERON:0010227;4.83e-07;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000119!9.16e-12!312;UBERON:0000483!2.59e-11!309;UBERON:0000025!4.48e-11!194;UBERON:0004111!2.40e-09!241;UBERON:0000477!1.65e-08!286;UBERON:0000487!2.66e-08!22;UBERON:0001986!4.72e-08!18;UBERON:0004638!4.72e-08!18;UBERON:0004852!4.72e-08!18;UBERON:0005743!5.31e-08!86;UBERON:0006914!8.81e-08!25;UBERON:0001981!2.84e-07!60;UBERON:0007500!2.84e-07!60;UBERON:0004537!2.84e-07!60;UBERON:0006965!2.84e-07!60;UBERON:0004872!3.74e-07!84;UBERON:0001017!5.30e-07!82;UBERON:0003075!7.33e-07!86;UBERON:0007284!7.33e-07!86;UBERON:0000073!8.08e-07!94;UBERON:0001016!8.08e-07!94|ontology_enrichment_uberon_v019=UBERON:0002771;2.02e-12;2!UBERON:0000200;3.90e-09;6!UBERON:0000074;4.63e-08;7!UBERON:0001229;4.63e-08;7!UBERON:0004638;7.23e-08;18!UBERON:0001986;7.23e-08;18!UBERON:0004852;7.23e-08;18!UBERON:0002079;4.83e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0002771,1.81e-12,2;UBERON:0000025,6.26e-10,192;UBERON:0000200,5.49e-09,6;UBERON:0010532,4.54e-08,7;UBERON:0000074,4.54e-08,7;UBERON:0001229,4.54e-08,7;UBERON:0001230,4.54e-08,7;UBERON:0003220,4.54e-08,7;UBERON:0005749,4.54e-08,7;UBERON:0004199,4.54e-08,7;UBERON:0004209,4.54e-08,7;UBERON:0004198,4.54e-08,7;UBERON:0004638,6.02e-08,18;UBERON:0001986,6.02e-08,18;UBERON:0004852,6.02e-08,18;UBERON:0005103,4.11e-07,8;UBERON:0000083,4.11e-07,8;UBERON:0009201,4.11e-07,8;UBERON:0006553,4.11e-07,8;UBERON:0003074,4.11e-07,8;UBERON:0003060,4.11e-07,8;UBERON:0002079,4.31e-07,1;UBERON:0004111,4.79e-07,240;UBERON:0003914,5.77e-07,117|phase1_expression=0.363356758541113,0,0,0,0,0,0,0,0.261185628199839,0.245733936501509,2.79120467188971,0.436882744260345,0,0.37129905888014,0,0,0,0,0,0.369363174230364,0.204000691244253,0.313454721478088,0.286235987131057,0.547497700291537,0,0.0764134057479513,0,0.0787107813136792,0,0,0,0,1.50602959389125,0.739508020333575,0.154934401160603,0.284338464974843,0,1.10799081706375,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0.521482918420201,0.217188844705117,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0,0.294605907474837,0,0,0.128091319725675,0,0,0,0,0.296573126324121,0.267540828089713,0,0,0,0,0,0,0,0.950452044448374,0,0,0,0,0.821127996921047,0,0,0,0,0.670700859703636,0.12786256184353,0.722878304769133,0,0.144846518960824,0,0,0.0945348171640679,0.443458794925128,0.087834785693126,0.392937226493138,0.364295288292542,0.370784442784429,0,0.174129737299267,0.132957960518865,0.238490624305342,0,0.371457501329565,0.596287222100115,0.860234595106124,0.347140501607594,0.56530794192401,1.25849830862972,0.275118041940067,1.8809546988313,0.258416759169329,0,0,1.20848795132744,0.760272105718513,0.488124115096339,0,0.81014194788176,0.17859945656816,0.22452937262617,0,1.53316637465883,3.79706263827252,0.549605231791222,0,0,0,0,0.12663051166458,0,0,0.354668382198357,0.560677600142307,0,0,0,0.269421344139376,0.326923806226917,0.302714855289863,0,0,0,0.570471821544449,0.149448680551801,0.23486899728753,0.323745888736263,0.140450806702248,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0.45071417671979,0.453728732640084,0,0.213557388818567,0,0,0.103052529238439,0,0,0,0.0974370051611986,0,0.184099797284599,0.161646056818812,0.355009592516614,0.201504196455281,0,0,0,0,0.609868530647977,0.132529768321485,0.348581828608555,0.207322110030741,0,0,0,0.643240938192885,1.38134921352481,0,0,0.118306800039844,0,0.241011029883482,0,0,0,0.269662616320329,0,0,0,0,0,0,0,0,0,0.441463099414651,0.122988438543114,0.514703430895577,0.439001141634502,0,0.100528972411631,0.0925884451585296,0,0,0,0,0.234817388471643,0.144366447761074,0,0.380508304469197,0.790204397959275,0,0,0,0,0,0,0.283550194484773,0,0,0,0,0,0,0,0,0.063497894292169,0.763976851116555,0,0,0,0,0.285826432630578,0.112131084345361,0.87192013766656,0.0733382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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_at_chr9:130885210..130885213,- | |||
|id=chr9:130885210..130885213,- | |||
|ontology_enrichment_celltype=CL:0000071!4.72e-08!18;CL:0002546!4.72e-08!18;CL:0002321!3.59e-07!248;CL:0000220!7.31e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0002188;4.19e-11;5!CL:0000307;7.74e-09;3!CL:1000746;4.63e-08;7!CL:1000612;4.63e-08;7!CL:0000071;7.23e-08;18!CL:0000115;7.33e-08;36!CL:0002553;4.83e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002188,4.07e-11,5;CL:0000115,3.30e-09,36;CL:0000068,8.09e-09,3;CL:0000069,8.09e-09,3;CL:0000307,8.09e-09,3;CL:0000377,8.09e-09,3;CL:1000746,4.54e-08,7;CL:1000612,4.54e-08,7;CL:0000071,6.02e-08,18;CL:0002546,6.02e-08,18;CL:0002553,2.52e-07,1;CL:0002078,3.96e-07,45 | |||
|ontology_enrichment_development_v019=CL:0000377;7.74e-09;3!UBERON:0006215;1.44e-08;3!CL:0002546;7.23e-08;18!UBERON:0010227;4.83e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!9.16e-12!312;UBERON:0000483!2.59e-11!309;UBERON:0000025!4.48e-11!194;UBERON:0004111!2.40e-09!241;UBERON:0000477!1.65e-08!286;UBERON:0000487!2.66e-08!22;UBERON:0001986!4.72e-08!18;UBERON:0004638!4.72e-08!18;UBERON:0004852!4.72e-08!18;UBERON:0005743!5.31e-08!86;UBERON:0006914!8.81e-08!25;UBERON:0001981!2.84e-07!60;UBERON:0007500!2.84e-07!60;UBERON:0004537!2.84e-07!60;UBERON:0006965!2.84e-07!60;UBERON:0004872!3.74e-07!84;UBERON:0001017!5.30e-07!82;UBERON:0003075!7.33e-07!86;UBERON:0007284!7.33e-07!86;UBERON:0000073!8.08e-07!94;UBERON:0001016!8.08e-07!94 | |||
|ontology_enrichment_uberon_v019=UBERON:0002771;2.02e-12;2!UBERON:0000200;3.90e-09;6!UBERON:0000074;4.63e-08;7!UBERON:0001229;4.63e-08;7!UBERON:0004638;7.23e-08;18!UBERON:0001986;7.23e-08;18!UBERON:0004852;7.23e-08;18!UBERON:0002079;4.83e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002771,1.81e-12,2;UBERON:0000025,6.26e-10,192;UBERON:0000200,5.49e-09,6;UBERON:0010532,4.54e-08,7;UBERON:0000074,4.54e-08,7;UBERON:0001229,4.54e-08,7;UBERON:0001230,4.54e-08,7;UBERON:0003220,4.54e-08,7;UBERON:0005749,4.54e-08,7;UBERON:0004199,4.54e-08,7;UBERON:0004209,4.54e-08,7;UBERON:0004198,4.54e-08,7;UBERON:0004638,6.02e-08,18;UBERON:0001986,6.02e-08,18;UBERON:0004852,6.02e-08,18;UBERON:0005103,4.11e-07,8;UBERON:0000083,4.11e-07,8;UBERON:0009201,4.11e-07,8;UBERON:0006553,4.11e-07,8;UBERON:0003074,4.11e-07,8;UBERON:0003060,4.11e-07,8;UBERON:0002079,4.31e-07,1;UBERON:0004111,4.79e-07,240;UBERON:0003914,5.77e-07,117 | |||
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| |||
|short_description=p@chr9:130885210..130885213,- | |||
}} |
Revision as of 07:37, 14 September 2013
Short description: | p@chr9:130885210..130885213, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr9:130885210..130885213, - |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glomerular endothelial cell | 4.07e-11 | 5 |
endothelial cell | 3.30e-09 | 36 |
duct epithelial cell | 8.09e-09 | 3 |
branched duct epithelial cell | 8.09e-09 | 3 |
tracheal epithelial cell | 8.09e-09 | 3 |
tracheoblast | 8.09e-09 | 3 |
glomerular cell | 4.54e-08 | 7 |
kidney corpuscule cell | 4.54e-08 | 7 |
blood vessel endothelial cell | 6.02e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 6.02e-08 | 18 |
lung fibroblast | 2.52e-07 | 1 |
meso-epithelial cell | 3.96e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
middle temporal gyrus | 1.81e-12 | 2 |
tube | 6.26e-10 | 192 |
gyrus | 5.49e-09 | 6 |
primitive nephron | 4.54e-08 | 7 |
renal glomerulus | 4.54e-08 | 7 |
renal corpuscle | 4.54e-08 | 7 |
glomerular capsule | 4.54e-08 | 7 |
metanephric mesenchyme | 4.54e-08 | 7 |
glomerular tuft | 4.54e-08 | 7 |
S-shaped body | 4.54e-08 | 7 |
renal vesicle | 4.54e-08 | 7 |
comma-shaped body | 4.54e-08 | 7 |
blood vessel endothelium | 6.02e-08 | 18 |
endothelium | 6.02e-08 | 18 |
cardiovascular system endothelium | 6.02e-08 | 18 |
mesonephric epithelium | 4.11e-07 | 8 |
mesonephric tubule | 4.11e-07 | 8 |
nephric duct | 4.11e-07 | 8 |
renal duct | 4.11e-07 | 8 |
mesonephric duct | 4.11e-07 | 8 |
pronephric duct | 4.11e-07 | 8 |
left cardiac atrium | 4.31e-07 | 1 |
anatomical conduit | 4.79e-07 | 240 |
epithelial tube | 5.77e-07 | 117 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.