FFCP PHASE1:Hg19::chr12:4130254..4130285,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C157 | |||
|description=CAGE_peak_at_chr12:4130254..4130285,+ | |||
|id=chr12:4130254..4130285,+ | |||
|ontology_enrichment_celltype=CL:0002322!2.76e-70!5;CL:0000039!2.40e-33!7;CL:0000586!2.40e-33!7;CL:0000148!1.90e-13!10;CL:0000541!1.90e-13!10;CL:0000147!8.96e-10!14;CL:0000710!5.34e-07!20 | |||
|ontology_enrichment_celltype_v019=CL:0000039;8.06e-65;7!CL:0000586;8.06e-65;7!CL:0002322;2.40e-23;5!CL:0000148;3.24e-12;10!CL:0000147;5.26e-09;14!CL:0002321;1.81e-08;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,6.84e-65,7;CL:0000586,6.84e-65,7;CL:0002322,2.54e-23,5;CL:0000148,3.34e-12,10;CL:0000541,3.34e-12,10;CL:0000147,5.36e-09,14 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.25e-45;10!UBERON:0005564;1.25e-45;10 | |||
|ontology_enrichment_disease=DOID:3095!3.04e-23!22;DOID:2994!3.04e-23!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;1.84e-32;22!DOID:2994;1.84e-32;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.78e-32,22;DOID:2994,1.78e-32,22;DOID:305,5.13e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0003135!1.33e-32!11;UBERON:0000473!3.08e-29!8;UBERON:0003101!2.35e-16!22;UBERON:0000079!2.35e-16!22;UBERON:0000989!2.75e-15!1;UBERON:0008811!2.75e-15!1;UBERON:0006258!2.75e-15!1;UBERON:0005876!2.75e-15!1;UBERON:0004874!2.75e-15!1;UBERON:0000991!2.37e-11!21;UBERON:0009196!2.37e-11!21;UBERON:0009117!2.37e-11!21;UBERON:0005564!2.37e-11!21;UBERON:0004176!7.58e-11!22;UBERON:0002323!8.01e-08!46;UBERON:0003133!1.76e-07!48;UBERON:0004458!2.44e-07!49 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;7.93e-57;8!UBERON:0003135;1.49e-41;11!UBERON:0000991;4.18e-22;21!UBERON:0003101;3.95e-21;22!UBERON:0000079;3.95e-21;22!UBERON:0000922;2.01e-13;49!UBERON:0002323;5.42e-10;45!UBERON:0003133;2.97e-08;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,6.87e-57,8;UBERON:0003135,1.34e-41,11;UBERON:0000991,3.95e-22,21;UBERON:0009196,3.95e-22,21;UBERON:0009117,3.95e-22,21;UBERON:0005564,3.95e-22,21;UBERON:0004176,3.75e-21,22;UBERON:0003101,3.75e-21,22;UBERON:0000079,3.75e-21,22;UBERON:0002323,2.11e-10,46;UBERON:0003133,5.47e-10,48;UBERON:0004458,8.57e-10,49;UBERON:0003886,6.28e-09,54;UBERON:0005156,3.30e-08,59;UBERON:0000990,3.30e-08,59;UBERON:0002553,5.94e-08,61 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.853815942907168,0.662648841607426,1.04574548582567,0.932949495138334,2.01856680700503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781514011233092,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.60576387480195,0.253397002022874,2.75369840303351,9.61982658956018,3.76769088092864,13.0367920432035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr12:4130254..4130285,+ | |||
}} |
Revision as of 11:33, 11 January 2014
Short description: | p@chr12:4130254..4130285, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:4130254..4130285, + |
Coexpression cluster: | C157_testicular_H9_testis_iPS_teratocarcinoma_colon_trachea |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 6.84e-65 | 7 |
germ cell | 6.84e-65 | 7 |
embryonic stem cell | 2.54e-23 | 5 |
melanocyte | 3.34e-12 | 10 |
melanoblast | 3.34e-12 | 10 |
pigment cell | 5.36e-09 | 14 |
Ontology term | p-value | n |
---|---|---|
testis | 6.87e-57 | 8 |
male reproductive organ | 1.34e-41 | 11 |
gonad | 3.95e-22 | 21 |
indifferent external genitalia | 3.95e-22 | 21 |
indifferent gonad | 3.95e-22 | 21 |
gonad primordium | 3.95e-22 | 21 |
external genitalia | 3.75e-21 | 22 |
male organism | 3.75e-21 | 22 |
male reproductive system | 3.75e-21 | 22 |
body cavity | 2.11e-10 | 46 |
reproductive organ | 5.47e-10 | 48 |
body cavity or lining | 8.57e-10 | 49 |
body cavity precursor | 6.28e-09 | 54 |
reproductive structure | 3.30e-08 | 59 |
reproductive system | 3.30e-08 | 59 |
anatomical cavity | 5.94e-08 | 61 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.78e-32 | 22 |
germ cell cancer | 1.78e-32 | 22 |
carcinoma | 5.13e-07 | 106 |