FFCP PHASE1:Hg19::chr15:65670329..65670351,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9543 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9700 | |||
|TSSclassifier=strong | |||
|UniProt=Q8IVU1,E7ESE1 | |||
|association_with_transcript=26bp_to_ENST00000327987,ENST00000443278,NM_004884,uc002aos.2_5end | |||
|coexpression_cluster_id=C55 | |||
|description=CAGE_peak_1_at_IGDCC3_5end | |||
|id=chr15:65670329..65670351,- | |||
|ontology_enrichment_celltype=CL:0002319!1.44e-14!25;CL:0000047!1.11e-11!8;CL:0000540!2.77e-09!6;CL:0000031!2.77e-09!6;CL:0000404!2.77e-09!6;CL:0000133!4.45e-09!59;CL:0002322!4.31e-08!5;CL:0000039!6.35e-07!7;CL:0000586!6.35e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0000540;5.09e-19;6!CL:0000404;5.09e-19;6!CL:0002322;2.47e-16;5!CL:0002319;7.04e-14;25!CL:0000039;3.84e-11;7!CL:0000586;3.84e-11;7!CL:0002321;1.69e-09;15!CL:0002563;1.80e-07;4!CL:0000047;4.38e-07;2!CL:0002253;4.44e-07;2!CL:0000123;9.16e-07;2!CL:0000242;9.16e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,2.14e-24,8;CL:0000540,5.61e-19,6;CL:0000031,5.61e-19,6;CL:0000404,5.61e-19,6;CL:0002322,2.72e-16,5;CL:0002319,6.97e-14,25;CL:0000039,3.42e-11,7;CL:0000586,3.42e-11,7;CL:0000133,1.61e-10,59;CL:0000221,5.76e-08,72;CL:0002563,1.81e-07,4;CL:0002253,4.45e-07,2;CL:0000242,8.64e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000031;5.09e-19;6!UBERON:0003104;4.68e-08;31!UBERON:0009117;9.79e-08;10!UBERON:0005564;9.79e-08;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3095;3.12e-12;22!DOID:2994;3.12e-12;22!DOID:3119;7.02e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,3.09e-12,22;DOID:2994,3.09e-12,22;DOID:305,1.45e-07,106;DOID:0050687,4.72e-07,143;DOID:3119,7.93e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000073!3.99e-44!94;UBERON:0001016!3.99e-44!94;UBERON:0001017!8.44e-44!82;UBERON:0005743!3.25e-42!86;UBERON:0001049!2.09e-33!57;UBERON:0005068!2.09e-33!57;UBERON:0006241!2.09e-33!57;UBERON:0007135!2.09e-33!57;UBERON:0000955!6.00e-32!69;UBERON:0006238!6.00e-32!69;UBERON:0002616!2.05e-28!59;UBERON:0002780!3.76e-27!41;UBERON:0001890!3.76e-27!41;UBERON:0006240!3.76e-27!41;UBERON:0003080!3.09e-26!42;UBERON:0003075!1.50e-23!86;UBERON:0007284!1.50e-23!86;UBERON:0004121!3.07e-22!169;UBERON:0002346!8.89e-22!90;UBERON:0001893!1.73e-21!34;UBERON:0002020!2.81e-21!34;UBERON:0003528!2.81e-21!34;UBERON:0000924!3.38e-21!173;UBERON:0006601!3.38e-21!173;UBERON:0002791!1.31e-20!33;UBERON:0001869!5.80e-20!32;UBERON:0003056!4.53e-19!61;UBERON:0000956!6.57e-18!25;UBERON:0000203!6.57e-18!25;UBERON:0000153!1.63e-16!129;UBERON:0007811!1.63e-16!129;UBERON:0007023!5.52e-16!115;UBERON:0000033!1.87e-15!123;UBERON:0002619!1.94e-15!22;UBERON:0001950!1.40e-13!20;UBERON:0003076!2.68e-08!15;UBERON:0003057!2.68e-08!15;UBERON:0001894!3.49e-07!7;UBERON:0006222!3.49e-07!7;UBERON:0000922!3.79e-07!612;UBERON:0004732!7.12e-07!13;UBERON:0000200!9.27e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;5.56e-12;49!UBERON:0001242;1.80e-07;4!UBERON:0001262;1.80e-07;4!UBERON:0004786;1.80e-07;4!UBERON:0004808;1.80e-07;4!UBERON:0001277;1.80e-07;4!UBERON:0001052;3.17e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.75e-10,89;UBERON:0001017,1.72e-08,81;UBERON:0011216,9.71e-08,223;UBERON:0001242,1.81e-07,4;UBERON:0001262,1.81e-07,4;UBERON:0004786,1.81e-07,4;UBERON:0004808,1.81e-07,4;UBERON:0001277,1.81e-07,4;UBERON:0001052,2.52e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0.369363174230364,0,0.940364164434263,0.85870796139317,0.410623275218653,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18800285728205,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.12289565744301,6.22889911110981,13.2461094871251,19.4882783428896,8.07426722802011,1.82488679537915,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,4.30459534900897,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0.790204397959275,2.57545848628462,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.7950408664471,5.20559415430487,21.6520867577755,8.37581326671744,10.2070200264506,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0.195801157462741,0,0,0,0,0,0,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,15.7117284469109,0,0,0,0,0.131124414959424,0.451199612907412,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,1.03041011647722,0,0,0,0,0,0,0,0,0,0,0.145016693914229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03558180854457,0,0,0,0,0,0,0,0,0,0,0,0,3.73884248946156,1.92495971052672,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.849523652246594,0,0,0,0.296964680832639,0,0,0.422008249231538,0,0,0.422250816255987,0,0.276283915531148,13.6043683841309,0.511343412510774,0,0,0,0,0,0,0,0,0.969332746095218,0.649376687132959,3.99227596002388,1.5625665665114,0,0,0,0,0,1.03423011972439,1.74962768029953,1.21537496453305,0,0.120596438625408,0,0.331737779793674,0.295547618953547,0.438770794307945,0,0,0,0.113942055847001,0,0.0897576444097721,4.45454224880233,0,0,0,0,0,0,0,0,0,0,0,0,0,11.0255395718474,1.29833183845255,0,0,0,0.296521128680622,0,0,0.943615861729479,0,0.468528891450678,0,0,0,0,0,10.7125466570672,0,1.50323419414493,0.414752765588989,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12990370390266,0,0,1.01297273529406,0,0,0,0,0.144090417154106,2.74887830798198,1.02956998717179,0,0,0,0.135904206073614,0,0,0,0,0.410716136675979,0,0,0,0,0,0,0.399358000997982,0,0,0.201550417460179,0,24.4641494007653,46.1669448320331,44.7518111009734,45.1603743823039,0.196854963029498,0,1.59045937961861,0.544813624446302,9.80594205636617,4.26372253451425,3.32352270423348,0,0,0.91124334987037,0,0.157611414598396,1.10154635083496,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0.387848869084652,0.66116300871345,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314108192500469,0.886068179966986,0.488105059607853,0.3755727921195,0,0.221858103073705,0.558867626472451,1.38348634936231,0,0,0,0,1.40500471742064,3.33318365804898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,4.34840862432416,0.754773679776773,0,2.18419276384028,0,0,0,0,0,0.47317047000752,0,0,0,0.578063025868136,0,0.798169295285756,0.82046545696302,8.57043767153842,1.31398779682014,0.484426936895553,1.42769420259154,0,0,0,0,0,0.690359926060101,0.994581110581374,0.225630985047772,0,0,0.523813388962845,0,0,0.675375846183947,0,0.620060389503552,0.824405532520789,7.11067251723685,0,0,0,0,0.535701835878287,0.336283722218824,0.606965604236632,0.455324382702595,2.7497734750418,0,0,0.543757863814654,1.11813715056843,0.118193840883968,0,0.235479278551542,0.628462359664008,0,1.82631744101899,0,0,0.214429632529969,8.05869419836906,0,0.173858272302579,0,0,0,0,0,0,0.0852134047591577,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0.713520544665411,0.22589216407792,5.71690687076231,0,0.0771741581079447,0,0,0,0,0.392616934229891,0.297046400327086,4.226557275834,0,0,0.128915775947154,0,0,0,0,1.46067277649303,0,0.143339583151451,0.788857810965923,0.883889372481891,8.72701380680755,0,0,0,0,7.69615191493981,2.4038425832013,11.022769587995,17.4400898858789,7.74930475270125,5.329904173021,2.75778293221613,0.0757786982182394,0.535928260312357,0.829169439458779,0.310298987585686,0,0.952257725854961,0.968833647540092,0.993195428733726,0,0.12729431655633,0.606351566874658,0,0,0,0,0,0.325613074443898,0,0,0,0,0.244482888365733,0,0,0.201273793591026,0 | |||
|short_description=p1@IGDCC3 | |||
}} |
Revision as of 00:07, 12 January 2014
Short description: | p1@IGDCC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_IGDCC3_5end |
Coexpression cluster: | C55_hepatocellular_Intestinal_liver_Prostate_fibrosarcoma_Hepatocyte_hepatoblastoma |
Association with transcript: | 26bp_to_ENST00000327987, ENST00000443278, NM_004884, uc002aos.2_5end |
EntrezGene: | IGDCC3 |
HGNC: | 9700 |
UniProt: | Q8IVU1E7ESE1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 2.14e-24 | 8 |
neuron | 5.61e-19 | 6 |
neuroblast | 5.61e-19 | 6 |
electrically signaling cell | 5.61e-19 | 6 |
embryonic stem cell | 2.72e-16 | 5 |
neural cell | 6.97e-14 | 25 |
germ line cell | 3.42e-11 | 7 |
germ cell | 3.42e-11 | 7 |
neurectodermal cell | 1.61e-10 | 59 |
ectodermal cell | 5.76e-08 | 72 |
intestinal epithelial cell | 1.81e-07 | 4 |
epithelial cell of large intestine | 4.45e-07 | 2 |
Merkel cell | 8.64e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.75e-10 | 89 |
central nervous system | 1.72e-08 | 81 |
organ system subdivision | 9.71e-08 | 223 |
intestinal mucosa | 1.81e-07 | 4 |
wall of intestine | 1.81e-07 | 4 |
gastrointestinal system mucosa | 1.81e-07 | 4 |
gastrointestinal system epithelium | 1.81e-07 | 4 |
intestinal epithelium | 1.81e-07 | 4 |
rectum | 2.52e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 3.09e-12 | 22 |
germ cell cancer | 3.09e-12 | 22 |
carcinoma | 1.45e-07 | 106 |
cell type cancer | 4.72e-07 | 143 |
gastrointestinal system cancer | 7.93e-07 | 14 |