FFCP PHASE1:Hg19::chr19:39898715..39898729,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C250 | |||
|description=CAGE_peak_at_chr19:39898715..39898729,+ | |||
|id=chr19:39898715..39898729,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.64e-25!42;CL:0000860!6.11e-24!45;CL:0000738!1.61e-23!140;CL:0000766!3.49e-23!76;CL:0002009!6.95e-19!65;CL:0000557!7.02e-19!71;CL:0002194!7.60e-18!63;CL:0000576!7.60e-18!63;CL:0000040!7.60e-18!63;CL:0000559!7.60e-18!63;CL:0000839!1.55e-17!70;CL:0002087!7.68e-17!119;CL:0002031!1.76e-16!124;CL:0000037!3.19e-13!172;CL:0000566!3.19e-13!172;CL:0000988!4.68e-13!182;CL:0002032!2.39e-12!165;CL:0000837!2.39e-12!165;CL:0000763!1.04e-11!112;CL:0000049!1.04e-11!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.57e-29;33!CL:0002057;5.57e-29;33!CL:0000473;1.47e-22;39!CL:0000234;1.47e-22;39!CL:0000576;2.95e-19;48!CL:0000766;4.76e-17;69!CL:0000094;6.34e-09;8!CL:0002087;1.68e-07;104!CL:0000738;6.55e-07;136!CL:0000081;6.61e-07;11!CL:0000763;7.31e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.33e-37,42;CL:0002057,1.33e-37,42;CL:0000473,1.00e-35,48;CL:0000234,1.00e-35,48;CL:0000766,2.15e-34,72;CL:0000738,1.05e-29,136;CL:0000557,3.03e-28,67;CL:0002009,1.34e-27,61;CL:0002194,5.26e-26,59;CL:0000576,5.26e-26,59;CL:0000040,5.26e-26,59;CL:0000559,5.26e-26,59;CL:0000839,5.74e-26,66;CL:0002031,1.33e-20,120;CL:0002087,3.52e-20,115;CL:0000763,8.82e-20,108;CL:0000049,8.82e-20,108;CL:0000037,5.97e-19,168;CL:0002032,4.21e-17,161;CL:0000837,4.21e-17,161;CL:0000988,4.47e-17,177;CL:0000094,6.84e-09,8;CL:0002393,2.39e-07,9;CL:0002397,2.39e-07,9;CL:0000081,8.39e-07,11 | |||
|ontology_enrichment_development_v019=CL:0002057;3.85e-27;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.15e-19!102;UBERON:0003061!4.15e-19!102;UBERON:0007023!9.79e-18!115;UBERON:0002193!3.34e-16!112;UBERON:0002371!3.61e-16!80;UBERON:0001474!7.10e-14!86;UBERON:0004765!5.52e-12!101;UBERON:0001434!5.52e-12!101;UBERON:0002405!2.82e-10!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,9.15e-25,76;UBERON:0002390,1.03e-24,98;UBERON:0003061,1.03e-24,98;UBERON:0001474,1.55e-22,82;UBERON:0002193,5.72e-22,108;UBERON:0004765,2.01e-21,90;UBERON:0002405,1.05e-19,93;UBERON:0001434,1.08e-19,100;UBERON:0007023,2.61e-15,114;UBERON:0002204,1.19e-09,167;UBERON:0003081,7.90e-09,203 | |||
|phase1_expression=0.726713517082227,3.21150785836475,0.986680828671798,0,1.34088328328186,0,0,0.631719873426831,0.522371256399677,0.245733936501509,0.697801167972428,0.436882744260345,0,0.866364470720326,2.98257638155124,1.34465029290355,0,0,0,0,0.204000691244253,0,0,0.273748850145768,0,1.91033514369878,0.821005894499457,1.25937250101887,10.2274711980715,7.29275856384704,14.0882672217629,0,0.90361775633475,0.369754010166788,0.309868802321207,0.142169232487422,0,9.97191735357379,80.8194123304671,26.4753262273339,0.895661896959697,0.971680998056939,0.77272670290256,13.6674344452791,13.2256580291083,8.49044214157357,25.3347650227196,30.8375916016369,19.8212077372866,40.2769349251011,35.0940167944868,17.9726494715325,35.1640594351351,30.3377801284398,43.3364757101894,25.6009581777942,19.1034305040492,4.71919317334678,54.1768489496498,20.53945773287,39.6389017995406,15.5030111087757,30.9168669313529,20.4587880255693,19.4440189881151,13.0498601678962,21.1759564658495,40.4510351063357,29.2030434315313,17.5922964211144,15.7403870684676,8.10210799172642,10.7597211729901,8.02770087985379,11.2680278981473,2.72556239160889,5.05478840159228,7.80919842775833,10.7686143087044,1.71007646244749,3.58050018958362,1.0959849225878,0,0,0,0.853460445133014,0.400395987036012,0.574752439954483,0,0.954053754535364,9.10740750575117,15.8554041130153,14.5263826687587,0,1.68152568894461,1.31692042387539,5.11445402295966,31.8338717826823,46.4659387738891,0.334372990781356,0.977766799900771,0.946895611469467,1.94826728407911,1.11410456885174,2.3568472597987,1.77227115666897,1.35401931882508,1.79327847615945,1.30059347559878,0.657751618414705,0.276350017785848,0.579606171470105,1.63115219478266,1.07016331235885,0,0.339928028092699,0.766440987203842,0.68725489096526,2.02415753615602,1.59282707162048,0,0.950452044448374,0.301150238155546,0.383959833463255,0,0,0.821127996921047,12.2980113367087,44.6625126958457,12.1652499261551,2.43806866313962,0,0.12786256184353,0.361439152384566,0,1.15877215168659,0,0.486634870302636,0.189069634328136,0,0.527008714158756,1.37528029272598,0.364295288292542,0.370784442784429,0,0,0.132957960518865,2.8618874916641,2.85997455390064,2.22874500797739,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,17.1314542666882,27.1446184903828,0.436094052142534,1.98788780678127,0.12663051166458,0.529636723252875,0.286836620748814,1.77334191099179,0,0,0.24666754841716,0.311211035399766,0.134710672069688,0,0.151357427644931,0,0,0.312160076830321,0,0.448346041655403,0,0,0.140450806702248,0.61246251376468,0.61417158655884,1.13658359293342,0,1.23633464639278,0,0,0,0.250237039743928,0.277064115484183,0,1.22595118319608,0.901428353439581,0.113432183160021,0.358779271377724,0,0.211931901159562,0.900273288253207,0.309157587715317,0.772921620136887,0.558350568994769,0,0.0974370051611986,0.252433774244115,0,1.77810662500693,0.710019185033229,0.10075209822764,0,0.386521706326594,0,0,0.365921118388786,0,0.232387885739037,0.10366105501537,0,0,0,0.643240938192885,0,4.64367928031979,0.721879481669586,0,0,0.241011029883482,0,0.217879444092406,0,0,0,0,0,0,0,0,0,1.96565443335525,0.590789906681404,0,0.122988438543114,0,0.329250856225877,0,0.703702806881416,0.370353780634118,0,0,0,0.115930404975077,0.117408694235822,0,0.925971025153221,0.190254152234598,1.58040879591855,0.858486162094873,0.246217006087397,0,0.445893486866185,0,0,0,0.53735113621709,0,0.383382679165211,0,0.264145302039678,71.9428560926479,56.062661879198,48.9820641694354,0.063497894292169,0,0,0,0.205654985406647,0,0,0,0,0.07333828582095,0.387815147273333,3.57656445851882,0,0,0,0,0,0.266422179016099,0.57191197463259,0,0.823240336780769,0,0.355391948742546,0.791951872933429,0,0,0.399891964728228,2.43247561282381,3.01354254859276,12.6500363689819,0.718874566474748,1.14861935834114,0,0.289562613335158,1.43833425785268,0.358121926479791,0.112085143993527,8.47232268868287,34.5004119775228,12.5776175554153,0,0,0.773288812777695,0,0.637938751653163,52.4304916763028,95.731666945288,20.7207756718018,3.31267027641678,1.50051156317903,0.542530047399471,0.831883446123229,2.85486382075459,0.630809660135739,0.702848489956279,0,0,0,0,0.368738337083406,0.695068915744663,0.391602314925481,0.686286847621712,3.51505644408909,34.0828437293415,29.3500783959472,0,1.66435439510497,0.604780586659361,0.248107807818777,0.153461973288062,0.841980283299221,0,0,0.804269605718038,0,0.771048469013278,0,0.0821271560138091,1.03850885836724,0.581051892299796,0.362578348774867,1.00253235151642,3.86740153530765,0,0.364182336013434,0.524497659837696,0,0.15403067420883,0,0,0,0,0.170093705276516,0,0,0.270946437543853,0,0,0,0,0.219259876645935,0,0,0,0,2.88514832613622,0,0,0.574265537996172,2.60024098414608,0,0.096670718292122,0,0.460511024178389,0.275673144969061,0.214840489736547,1.16013355131383,0.340906509664404,0.267096106940212,0.661139661443912,0.576570202095319,0.255225424989168,1.0115778085555,0.464845549297286,0.62962469366128,0,0,0,0,0.18532421910392,0,0,0.316379424718726,0,0.255897791311334,0.42793898803392,0.318203247925937,1.56989728039846,0,0,0.353437207037059,0,0,0.421258456238981,0,0.243713489631284,0,0.409499734223957,0.565621727814851,0,0,0,0,0,3.9353685122798,0.405820753925408,0.92947049429925,0,0.286822704408103,0,0,0,6.75544432952525,2.63435914367922,0,0.349934720244983,0.673554789078584,0.670302275535787,1.08890984861323,3.85989583184795,0.86101074534246,0,0.886860307073351,0,1.52234282769651,0.764637207142375,6.26611905891579,0.238231775457789,1.23408681925858,0,2.16012574895246,9.51750211553125,0,0,0,0.743212700502875,0.28853842595289,0.0711418433484141,0,0,0,0,0,0,0,0,0,0.338583555603207,0.321176150207399,0,0,0,0.614481528616916,0.223676107892416,0.500547425135725,0,0,0,0.540911356951966,0.33307196799782,0,0.37428108081644,7.91144168068228,0,0.445773537109913,0.284136146806413,1.19372242368845,0.593929361665277,3.37876772309155,3.97659059106519,0.422008249231538,0,0.494411622680279,0,9.36465544780028,8.01223355040328,0,0,0.123084805461069,0.311039587661807,0.0898683511473268,0.358042349351218,1.02314474045374,8.28604607350242,4.7896618469388,0,0,1.48428957058962,0,0.260427761085233,0.174919999992391,18.8499889613046,0.455173793141999,0.508507300585533,0,0,0,0,9.74315524395223,1.20596438625408,3.05163472634166,0.552896299656123,0,3.29078095730959,0,0.697118721393016,3.92446318369365,0.341826167541004,0,0.359030577639089,0.108647371922008,0.638002319463839,0.274792780205587,7.46248686426089,0,0.156980256395025,0.332423363800313,0.225595660617181,0.19606253431774,0.335643173951685,0,0,0.632994193584081,0.163232808159148,0.141353071433941,0,0.995261931078505,2.38835424159016,15.2757536233406,0.889563386041866,0.370691816839509,0.313265848516366,0.404406797884062,3.21031058919516,0.234264445725339,0,0.391329237864179,0,1.18375320854817,4.83962864194656,0,1.51647791108371,0.450970258243478,0,0,0,0.313932918407225,0,0.853828638089378,0.138674673013139,1.21491816834592,0.685946781900644,0.174118413160805,4.01871336956669,0.687944129886466,0.290268993867255,0.292357268344742,0.492692742319255,14.0634073908208,0.176512253383001,8.81324889044077,0,0,0.189932387867636,0.195551382734803,0.160317640503067,7.47085481587734,0.999048047910651,0.288180834308212,0.114536596165916,0.343189995723929,0.288109595976299,0.248505071130865,1.88555227693436,0,0,0,0,3.00210144354895,0.684526894459965,0,0,0,4.46851842035607,0.916641696046735,3.58936512288407,3.59422200898184,3.43380838509257,0.223171457441873,0.470284307407084,0,0,0,0,0.0674035438541849,0.295282444544246,0.0846733320657845,4.77137813885582,1.0896272488926,0.160753148465019,0,0,10.798746794472,12.3808312729272,0.0607495566580247,0,1.33969702408637,0.577000469484979,0,0.896436696664224,0.383830394638891,2.85878130549347,3.97255182219259,0,0,0,1.30634944043764,1.19730191562487,0.328370082997356,0,0,1.17241786942466,3.97520666736664,2.19781025814636,0.92562821219883,0.171086837884329,0,10.0380167813633,6.9169894243853,9.94173732833269,3.96932817449561,1.38328142328561,0.243585196761792,0.638341257770182,10.33633826402,12.2838048071123,7.65863941908654,13.7706504898118,0,5.31640907980192,19.1581235896082,1.251909307065,4.58727356552057,1.22021956690538,0.869349641179368,0.276697269872462,0,0.606596470166591,0.285465333544967,0,0,0,0,0.467426619694449,0,2.08343305802598,0.50313580350515,6.22867855117575,2.97492088916001,3.02461847526478,0.777186002913902,0,0,0,0.155262956876259,0.829412415681711,0.265841714557995,1.04349012362347,0.150257608997218,0.380805212168795,0,0.909243296012797,0.429642228169954,0.464033759878494,0.398095888698616,0,0,0,0,0,0,0,0,0,0.244736704506468,0.179088841081487,0,0,0,0,0,0,0,0.303859956177382,0.829550616910385,7.59955204473615,1.32864840313363,0.817826971279221,0.327609848846413,0.491545817507439,0.211312123358627,0,0.213383459388282,0.172214979660816,0,0.184105950251841,0.839277046316667,2.48830904013189,0,0,0,0,0,0.212574920101683,1.36329340684902,0,0,0.0788617450012534,0,3.87943538059752,1.531227386766,0.0642292250964595,1.41696576325585,1.75597244962866,0.82046545696302,0,0.138314504928436,0.484426936895553,0,0.196295437002051,0.353909170043221,2.93485757634686,0.346576998451015,0,0,0,2.1058891937792,0.20170506870352,0,0.261906694481422,0.818859587550484,0.443568258651136,0.135075169236789,3.12431239445539,0.826747186004736,0.0634158101939068,1.09394961803644,2.19303106742873,7.93937885422871,0,0.255524855279191,0.535701835878287,0,2.42786241694653,0.455324382702595,0.620916591138472,0.576169937778896,0.171488009437418,0.203909198930495,0.0657727735628491,0.354581522651905,0,3.06123062117005,4.39923651764805,0.560544326627578,0,0.647782773655864,0.9555033757741,1.57248397188644,0,0,0,2.40513409419076,0.828864656652147,1.53646629384555,1.38251932362818,0.430227358820278,0.118332000730565,0,7.19757985324579,1.14553434272025,1.5510319283216,0,0.223710863595585,0,0.365753774946808,0.647428837187895,3.90118666053739,1.1598144313382,7.77137588894623,0,1.19370465096821,0.594600453887843,0,0.109940516745429,0.150962843566674,3.70435958918134,5.46398901259893,0.940634592723046,4.4126697915703,0,18.6493043759198,0.891139200981258,5.9171801861676,0.169927114687817,0.751871343838829,1.28915775947154,0.599646935549574,0,0.705789743431384,0.240724100067505,6.57302749421866,1.83491713361816,0.430018749454354,0,0.203974470572744,0.436350690340377,5.290268405154,1.85997509083376,2.31087814315709,0.865253124247578,0.126166424835079,0,0,0,0,0.0918948995348449,0.250707539292375,3.78893491091197,1.60778478093707,5.80418607621146,0.620597975171371,15.5660806787716,2.85677317756488,0.904244737704086,1.1794195716213,0.224263725161227,1.0820016907288,4.64869534603904,26.7791599913262,4.79126621519393,1.48174516632093,2.29511057256564,4.32458463509817,0.162806537221949,0.533636729388577,0,0,0,0.977931553462932,0.406896178315738,1.99727032255654,10.8687848539154,1.28227396921293 | |||
|short_description=p@chr19:39898715..39898729,+ | |||
}} |
Revision as of 23:14, 20 January 2014
Short description: | p@chr19:39898715..39898729, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:39898715..39898729, + |
Coexpression cluster: | C250_Mast_Neutrophils_CD14_Eosinophils_CD8_Peripheral_CD4 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.33e-37 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.33e-37 | 42 |
defensive cell | 1.00e-35 | 48 |
phagocyte | 1.00e-35 | 48 |
myeloid leukocyte | 2.15e-34 | 72 |
leukocyte | 1.05e-29 | 136 |
granulocyte monocyte progenitor cell | 3.03e-28 | 67 |
macrophage dendritic cell progenitor | 1.34e-27 | 61 |
monopoietic cell | 5.26e-26 | 59 |
monocyte | 5.26e-26 | 59 |
monoblast | 5.26e-26 | 59 |
promonocyte | 5.26e-26 | 59 |
myeloid lineage restricted progenitor cell | 5.74e-26 | 66 |
hematopoietic lineage restricted progenitor cell | 1.33e-20 | 120 |
nongranular leukocyte | 3.52e-20 | 115 |
myeloid cell | 8.82e-20 | 108 |
common myeloid progenitor | 8.82e-20 | 108 |
hematopoietic stem cell | 5.97e-19 | 168 |
hematopoietic oligopotent progenitor cell | 4.21e-17 | 161 |
hematopoietic multipotent progenitor cell | 4.21e-17 | 161 |
hematopoietic cell | 4.47e-17 | 177 |
granulocyte | 6.84e-09 | 8 |
intermediate monocyte | 2.39e-07 | 9 |
CD14-positive, CD16-positive monocyte | 2.39e-07 | 9 |
blood cell | 8.39e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 9.15e-25 | 76 |
hematopoietic system | 1.03e-24 | 98 |
blood island | 1.03e-24 | 98 |
bone element | 1.55e-22 | 82 |
hemolymphoid system | 5.72e-22 | 108 |
skeletal element | 2.01e-21 | 90 |
immune system | 1.05e-19 | 93 |
skeletal system | 1.08e-19 | 100 |
adult organism | 2.61e-15 | 114 |
musculoskeletal system | 1.19e-09 | 167 |
lateral plate mesoderm | 7.90e-09 | 203 |