FFCP PHASE1:Hg19::chr19:55999783..55999842,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=284297 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26641 | |||
|TSSclassifier=strong | |||
|UniProt=A1L4H1 | |||
|association_with_transcript=-27bp_to_ENST00000389623,NM_001144950,NM_001195267,uc002qlg.3_5end | |||
|coexpression_cluster_id=C3823 | |||
|description=CAGE_peak_1_at_SSC5D_5end | |||
|id=chr19:55999783..55999842,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.40e-28!180;CL:0000057!2.74e-16!75;CL:0000183!2.75e-11!59;CL:0000680!1.49e-10!57;CL:0000056!1.49e-10!57;CL:0000355!1.49e-10!57;CL:0000187!3.31e-10!54;CL:0002620!1.21e-08!23;CL:0000393!2.35e-08!60;CL:0000211!2.35e-08!60;CL:0000192!2.89e-08!42;CL:0000514!2.89e-08!42 | |||
|ontology_enrichment_celltype_v019=CL:0002620;4.26e-08;23!CL:0000134;2.63e-07;55!CL:0000192;3.18e-07;43!CL:0000723;6.32e-07;61!CL:0000048;6.81e-07;58!CL:0002320;7.39e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.47e-16,76;CL:0000680,1.49e-11,58;CL:0000056,1.49e-11,58;CL:0000355,1.49e-11,58;CL:0000187,1.55e-11,55;CL:0000192,1.16e-09,43;CL:0000514,1.16e-09,43;CL:0000393,7.67e-09,61;CL:0000211,7.67e-09,61;CL:0002620,4.51e-08,23;CL:0000359,5.69e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000514;3.18e-07;43 | |||
|ontology_enrichment_disease=DOID:2394!7.39e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;9.95e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.05e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000475!9.68e-15!365;UBERON:0000914!1.57e-12!83;UBERON:0002329!1.57e-12!83;UBERON:0003077!1.57e-12!83;UBERON:0003059!1.57e-12!83;UBERON:0007282!1.57e-12!83;UBERON:0009618!1.57e-12!83;UBERON:0007285!1.57e-12!83;UBERON:0004290!2.47e-12!70;UBERON:0002385!4.08e-12!63;UBERON:0001015!4.08e-12!63;UBERON:0000383!4.08e-12!63;UBERON:0001134!1.92e-11!61;UBERON:0002036!1.92e-11!61;UBERON:0003082!1.92e-11!61;UBERON:0005256!1.04e-09!143;UBERON:0000486!1.06e-09!82;UBERON:0000481!5.91e-09!347;UBERON:0000119!2.66e-08!312;UBERON:0007023!4.35e-08!115;UBERON:0000483!6.21e-08!309;UBERON:0004872!1.00e-07!84 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002385,6.15e-13,64;UBERON:0001015,6.15e-13,64;UBERON:0000383,6.15e-13,64;UBERON:0007524,1.22e-12,73;UBERON:0003077,1.87e-12,72;UBERON:0007285,1.87e-12,72;UBERON:0002329,1.95e-12,71;UBERON:0003059,1.95e-12,71;UBERON:0007282,1.95e-12,71;UBERON:0004290,1.95e-12,71;UBERON:0009618,1.95e-12,71;UBERON:0001134,3.43e-12,62;UBERON:0002036,3.43e-12,62;UBERON:0003082,3.43e-12,62;UBERON:0007503,8.05e-12,78;UBERON:0000486,2.13e-09,83;UBERON:0005256,2.67e-09,122;UBERON:0003104,3.09e-09,160;UBERON:0009142,3.09e-09,160;UBERON:0010314,8.11e-08,132;UBERON:0002199,2.43e-07,46;UBERON:0002416,2.43e-07,46 | |||
|phase1_expression=4.72363786103447,8.99222200342129,9.58489947852604,2.00146596706261,4.46961094427288,0.872338524100369,2.53299878168311,12.0026775951098,9.92505387159386,0,0,0.436882744260345,1.05506791291381,6.68338305984252,7.29074226601415,2.01697543935533,3.61616716814386,0,4.87932798790507,4.92484232307152,6.12002073732759,6.58254915103984,1.14494394852423,1.09499540058307,1.38096903554283,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.2568239576754,4.69490601792545,1.15076305659177,39.7583067623023,52.1391427061325,31.8662341713812,62.0323038699857,61.8026285284348,7.46825055596136,9.53436409089025,10.2766699260957,4.78073625566651,0,0,0,0,0,0,0,0,0.198762407366705,0.860234595106124,0.694281003215189,0.56530794192401,0.419499436209906,0,0,0,0.35576626268671,0,0.402829317109147,0,0.24406205754817,0,0.81014194788176,0.0892997282840798,0.898117490504679,0.225222960966644,1.53316637465883,0.949265659568129,0.183201743930407,0,0,0,46.2183915076646,0.759783069987479,6.09082231740807,25.8152958673932,4.965357350777,2.24271040056923,2.1349799145941,1.2333377420858,7.46906484959439,2.2900814251847,2.94231425604226,5.2975099675726,7.49028701823999,1.87457145467037,8.11616199758833,0,7.62188270814185,0.939475989150119,0.323745888736263,0.140450806702248,2.65400422631361,0.737005903870608,7.23280468230358,1.18800285728205,27.6938960791984,6.37112953356618,22.2771623963034,1.0100166837244,1.00094815897571,2.49357703935765,4.82875382968922,8.58165828237255,21.0333282469236,1.13432183160021,29.4199002529734,20.2879519377639,16.1068244881267,29.4089274162714,11.1296731577514,45.0870945079851,35.9205532719968,54.6835316461703,26.502865403846,59.8268044958551,42.5270531727423,17.7810662500693,71.7119376883561,13.1985248678209,12.0388020540446,0,0,0,0.243947412259191,0.397589304964456,0.813357600086629,1.45125477021519,0.756962552626885,1.82488679537915,17.2094485562798,31.5188059714514,12.4321429217232,8.35862270457562,13.7157101517221,0,0,0.241011029883482,0.330881918197182,0.217879444092406,0,0,0,0,1.4763109092493,2.80483547606892,11.5240723172792,17.641045366265,0,0,0,0,0,3.08822058537346,0,0,0,0.0925884451585296,0.651616610620649,1.03993478527958,0,7.07175470347969,16.0849911103076,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0.985326475791887,0.264145302039678,0.414656231081544,0.720599767084807,1.8936365013957,1.0159663086747,4.20187268114105,0,1.71072446022705,1.64523988325318,15.6178390078837,0.857479297891735,3.81245686774226,4.79556075716608,2.4935017179123,14.6077038806289,89.4141114629706,3.381211010224,21.5409874433745,17.6812642749322,2.05765899409714,0,1.5985330740966,5.00422977803516,16.8212697671347,0,1.95441710576241,3.19852753868291,0.791951872933429,11.4546963282643,14.816068796205,26.7927616367913,0,0,0,0.718874566474748,4.59447743336456,8.5582143024431,3.90909528002464,7.60262393436419,0.716243852959582,0.112085143993527,0,0,0,6.86055485400651,0,0,0,0.637938751653163,0,0,0,16.1952769069265,8.50289885801451,1.62759014219841,7.48695101510906,31.938788994692,3.94256037584837,32.7995961979597,16.8529815847523,22.7407504055985,7.24311499047534,10.627609576567,8.11224341583494,8.94901229021253,26.2373551000072,28.480904176301,0,0,0,0.303127571446259,0,1.20956117331872,15.6307918925829,32.0735524172051,24.9787484045435,17.1706460002639,6.65219423786715,10.9380666377653,0,4.78050050788232,12.4293207719189,5.33826514089759,6.75030757938707,3.37010097533882,0,0,0,1.60740227430449,1.82091168006717,4.06485686374215,0.451199612907412,0.308061348417659,0.784349769176855,1.46139224653261,1.05551628892876,0,0,1.0795795805107,1.54227252690289,7.31555381368403,10.0337954770971,0,0,0.895499018888713,0,0,0.256450125116389,2.29610251989794,0.325378394664303,1.33953315142039,0,0.082509499920588,1.14853107599234,0,3.21367859688319,6.09025525240368,2.31072925671967,1.84204409671355,0.413509717453592,4.40423003959922,4.35050081742686,1.53407929348982,14.8683499530051,0,0,0,0,1.85938219718914,35.5737951918623,11.1525963225696,6.77673876387395,4.7907542728532,9.5692629128258,19.8296914441194,1.14499909393593,1.86079184679834,3.48017367190598,4.38449446024797,3.58256907835867,7.27496279657665,15.273755900445,5.49464048139461,4.31693898199955,1.92175920815238,2.35624804691373,6.67202189191943,0,6.7401352998237,2.92580243453754,5.11798328225697,3.16950440270266,7.91699486166317,11.312434556297,16.9512174930364,16.5409603063837,9.28814565337708,9.20746859032902,9.260408548267,4.59126326432643,1.01455188481352,2.78841148289775,1.40847801266121,1.43411352204052,1.17898849215745,1.426684205925,12.4166372424709,14.9886421061342,26.3435914367921,1.51789269506286,1.39973888097993,0,1.34060455107157,0,1.60044461320525,0,0,0.886860307073351,0.229723400206959,0,0,0,0,0,0,0,0,4.70025912960882,0,0,0,0,0.0711418433484141,0,0,0,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| |||
|short_description=p1@SSC5D | |||
}} |
Revision as of 01:13, 21 January 2014
Short description: | p1@SSC5D |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SSC5D_5end |
Coexpression cluster: | C3823_Mesenchymal_mesenchymal_Fibroblast_Chondrocyte_epithelioid_Smooth_Ewing |
Association with transcript: | -27bp_to_ENST00000389623, NM_001144950, NM_001195267, uc002qlg.3_5end |
EntrezGene: | SSC5D |
HGNC: | 26641 |
UniProt: | A1L4H1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.47e-16 | 76 |
muscle precursor cell | 1.49e-11 | 58 |
myoblast | 1.49e-11 | 58 |
multi-potent skeletal muscle stem cell | 1.49e-11 | 58 |
muscle cell | 1.55e-11 | 55 |
smooth muscle cell | 1.16e-09 | 43 |
smooth muscle myoblast | 1.16e-09 | 43 |
electrically responsive cell | 7.67e-09 | 61 |
electrically active cell | 7.67e-09 | 61 |
skin fibroblast | 4.51e-08 | 23 |
vascular associated smooth muscle cell | 5.69e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
muscle tissue | 6.15e-13 | 64 |
musculature | 6.15e-13 | 64 |
musculature of body | 6.15e-13 | 64 |
dense mesenchyme tissue | 1.22e-12 | 73 |
paraxial mesoderm | 1.87e-12 | 72 |
presumptive paraxial mesoderm | 1.87e-12 | 72 |
somite | 1.95e-12 | 71 |
presomitic mesoderm | 1.95e-12 | 71 |
presumptive segmental plate | 1.95e-12 | 71 |
dermomyotome | 1.95e-12 | 71 |
trunk paraxial mesoderm | 1.95e-12 | 71 |
skeletal muscle tissue | 3.43e-12 | 62 |
striated muscle tissue | 3.43e-12 | 62 |
myotome | 3.43e-12 | 62 |
epithelial vesicle | 8.05e-12 | 78 |
multilaminar epithelium | 2.13e-09 | 83 |
trunk mesenchyme | 2.67e-09 | 122 |
mesenchyme | 3.09e-09 | 160 |
entire embryonic mesenchyme | 3.09e-09 | 160 |
structure with developmental contribution from neural crest | 8.11e-08 | 132 |
integument | 2.43e-07 | 46 |
integumental system | 2.43e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.05e-07 | 14 |