FFCP PHASE1:Hg19::chr2:45166274..45166281,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=56bp_to_ENST00000437916_5end | |||
|coexpression_cluster_id=C573 | |||
|description=CAGE_peak_5_at_ENST00000437916_5end | |||
|id=chr2:45166274..45166281,- | |||
|ontology_enrichment_celltype=CL:0002586!1.02e-32!3;CL:0000064!3.32e-32!3;CL:0005012!3.32e-32!3;CL:0000067!3.32e-32!3;CL:0002304!3.32e-32!3;CL:0000149!1.01e-24!4;CL:0000080!1.80e-16!6;CL:0000306!2.13e-11!4;CL:0002222!2.13e-11!4;CL:0002224!2.13e-11!4;CL:0000075!1.20e-09!27;CL:0000147!1.85e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0002586;9.74e-88;3!CL:0000149;3.35e-66;4!CL:0000147;6.48e-20;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,1.52e-87,3;CL:0000149,4.67e-66,4;CL:0000147,7.13e-20,14 | |||
|ontology_enrichment_development_v019=UBERON:0003056;3.27e-23;3 | |||
|ontology_enrichment_disease=DOID:6193!1.32e-11!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007625!2.65e-60!11;UBERON:0000970!2.02e-51!20;UBERON:0002104!6.46e-49!21;UBERON:0000020!1.47e-44!23;UBERON:0000019!6.41e-44!19;UBERON:0000047!6.41e-44!19;UBERON:0004088!6.41e-44!19;UBERON:0003072!6.41e-44!19;UBERON:0003071!6.41e-44!19;UBERON:0004128!6.41e-44!19;UBERON:0001032!1.18e-42!24;UBERON:0004456!1.18e-42!24;UBERON:0001456!1.21e-39!21;UBERON:0000966!1.19e-34!5;UBERON:0005388!1.19e-34!5;UBERON:0001802!1.19e-34!5;UBERON:0001781!1.02e-32!3;UBERON:0001782!1.02e-32!3;UBERON:0005424!1.02e-32!3;UBERON:0001778!3.32e-32!3;UBERON:0001775!3.32e-32!3;UBERON:0005085!1.99e-28!29;UBERON:0000488!2.44e-24!4;UBERON:0003056!5.49e-19!61;UBERON:0001801!1.12e-18!14;UBERON:0001444!9.62e-17!48;UBERON:0002203!1.90e-16!6;UBERON:0001768!1.90e-16!6;UBERON:0003075!4.40e-13!86;UBERON:0007284!4.40e-13!86;UBERON:0002346!1.94e-12!90;UBERON:0001874!1.47e-11!1;UBERON:0010077!2.13e-11!4;UBERON:0005389!2.13e-11!4;UBERON:0000484!2.13e-11!4;UBERON:0002546!2.13e-11!4;UBERON:0000965!2.13e-11!4;UBERON:0001803!2.13e-11!4;UBERON:0003073!2.13e-11!4;UBERON:0005426!2.13e-11!4;UBERON:0002331!4.12e-10!10;UBERON:0000358!4.12e-10!10;UBERON:0000307!4.12e-10!10;UBERON:0000091!4.12e-10!10;UBERON:0000087!4.12e-10!10;UBERON:0007806!4.12e-10!10;UBERON:0008780!4.12e-10!10;UBERON:0005728!4.12e-10!10;UBERON:0000063!1.66e-09!97;UBERON:0002200!3.15e-09!11;UBERON:0006876!3.15e-09!11;UBERON:0000033!1.29e-08!123;UBERON:0000153!3.79e-08!129;UBERON:0007811!3.79e-08!129;UBERON:0000178!6.64e-07!15;UBERON:0000179!6.64e-07!15;UBERON:0000463!6.64e-07!15;UBERON:0009663!8.59e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;7.76e-118;5!UBERON:0005388;7.76e-118;5!UBERON:0001802;7.76e-118;5!UBERON:0001781;9.74e-88;3!UBERON:0001782;9.74e-88;3!UBERON:0000019;4.52e-32;19!UBERON:0000047;4.52e-32;19!UBERON:0004088;4.52e-32;19!UBERON:0010230;4.52e-32;19!UBERON:0000970;1.56e-30;20!UBERON:0002104;3.84e-29;21!UBERON:0001456;3.84e-29;21!UBERON:0000020;1.01e-26;23!UBERON:0001032;1.16e-25;24!UBERON:0004456;1.16e-25;24!UBERON:0007625;5.49e-25;11!UBERON:0001444;6.97e-12;48!UBERON:0000033;5.54e-11;50!UBERON:0010371;1.25e-08;31!UBERON:0007811;3.41e-08;52!UBERON:0000153;1.64e-07;54 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,1.83e-98,6;UBERON:0005388,1.83e-98,6;UBERON:0001802,1.83e-98,6;UBERON:0001782,1.52e-87,3;UBERON:0005424,1.52e-87,3;UBERON:0001781,4.67e-66,4;UBERON:0000019,1.56e-30,20;UBERON:0000047,1.56e-30,20;UBERON:0010312,1.56e-30,20;UBERON:0004088,1.56e-30,20;UBERON:0010230,1.56e-30,20;UBERON:0003072,1.56e-30,20;UBERON:0004128,1.56e-30,20;UBERON:0003071,1.56e-30,20;UBERON:0000970,3.84e-29,21;UBERON:0002104,3.84e-29,21;UBERON:0001456,7.08e-28,22;UBERON:0000020,1.16e-25,24;UBERON:0001032,1.16e-25,24;UBERON:0004456,1.16e-25,24;UBERON:0007625,6.20e-25,11;UBERON:0005085,3.79e-20,31;UBERON:0001444,3.57e-13,49;UBERON:0000033,1.15e-11,56;UBERON:0000153,1.22e-10,62;UBERON:0007811,1.22e-10,62;UBERON:0003056,1.22e-10,61;UBERON:0003075,3.31e-08,82;UBERON:0007284,3.31e-08,82;UBERON:0002346,7.10e-08,86 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.945348171640679,0.221729397462564,0.527008714158756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.927443239800615,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02580050046556,1.64007322849853,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0.741383633679017,0.730953646538188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0,0.451961481561065,0,0,0,0,0,0,0,0,0.343609788497747,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157115589916002,0,0,0,0,1.71543706023975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p5@ENST00000437916 | |||
}} |
Revision as of 02:54, 21 January 2014
Short description: | p5@ENST00000437916 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_ENST00000437916_5end |
Coexpression cluster: | C573_Lens_small_retina_Ciliary_Retinal_eye_putamen |
Association with transcript: | 56bp_to_ENST00000437916_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 1.52e-87 | 3 |
visual pigment cell | 4.67e-66 | 4 |
pigment cell | 7.13e-20 | 14 |
Ontology term | p-value | n |
---|---|---|
retina | 1.83e-98 | 6 |
photoreceptor array | 1.83e-98 | 6 |
posterior segment of eyeball | 1.83e-98 | 6 |
pigmented layer of retina | 1.52e-87 | 3 |
presumptive retinal pigmented epithelium | 1.52e-87 | 3 |
layer of retina | 4.67e-66 | 4 |
camera-type eye | 1.56e-30 | 20 |
simple eye | 1.56e-30 | 20 |
immature eye | 1.56e-30 | 20 |
ocular region | 1.56e-30 | 20 |
eyeball of camera-type eye | 1.56e-30 | 20 |
optic cup | 1.56e-30 | 20 |
optic vesicle | 1.56e-30 | 20 |
eye primordium | 1.56e-30 | 20 |
eye | 3.84e-29 | 21 |
visual system | 3.84e-29 | 21 |
face | 7.08e-28 | 22 |
sense organ | 1.16e-25 | 24 |
sensory system | 1.16e-25 | 24 |
entire sense organ system | 1.16e-25 | 24 |
pigment epithelium of eye | 6.20e-25 | 11 |
ectodermal placode | 3.79e-20 | 31 |
subdivision of head | 3.57e-13 | 49 |
head | 1.15e-11 | 56 |
anterior region of body | 1.22e-10 | 62 |
craniocervical region | 1.22e-10 | 62 |
pre-chordal neural plate | 1.22e-10 | 61 |
neural plate | 3.31e-08 | 82 |
presumptive neural plate | 3.31e-08 | 82 |
neurectoderm | 7.10e-08 | 86 |