FFCP PHASE1:Hg19::chr20:361506..361517,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57761 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16228 | |||
|TSSclassifier=strong | |||
|UniProt=Q96RU7 | |||
|association_with_transcript=198bp_to_NM_021158,uc002wdm.2_5end | |||
|coexpression_cluster_id=C2615 | |||
|description=CAGE_peak_4_at_TRIB3_5end | |||
|id=chr20:361506..361517,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.17e-48!254;CL:0000548!2.24e-23!679;CL:0000004!2.24e-23!679;CL:0000255!2.24e-23!679;CL:0000012!1.91e-22!682;CL:0000063!3.93e-20!578;CL:0000003!4.20e-16!722;CL:0000223!4.72e-14!59;CL:0000220!1.50e-13!246;CL:0002321!2.47e-13!248;CL:0000076!2.20e-11!62;CL:0002076!6.33e-11!43;CL:1000497!6.20e-09!18;CL:0002518!6.20e-09!18;CL:1000449!4.76e-08!16;CL:0000144!1.88e-07!625;CL:1000507!4.09e-07!12;CL:1000494!4.09e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:1000497;2.38e-11;17!CL:0002518;2.38e-11;17!CL:1000449;2.86e-10;15!CL:0002076;4.02e-10;42!CL:1000507;7.73e-09;10!CL:1000494;7.73e-09;10!CL:0002681;3.58e-08;12!CL:0002584;3.58e-08;12!CL:0002368;5.57e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.19e-51,253;CL:0000223,4.51e-18,58;CL:0002076,2.38e-13,42;CL:1000497,1.34e-11,17;CL:0002518,1.34e-11,17;CL:1000449,2.23e-10,15;CL:0000076,8.05e-10,63;CL:0002321,1.02e-09,250;CL:1000507,4.78e-09,10;CL:1000494,4.78e-09,10;CL:0002681,3.32e-08,12;CL:0002584,3.32e-08,12;CL:0002368,6.98e-07,13 | |||
|ontology_enrichment_development_v019=CL:0000223;2.08e-10;58 | |||
|ontology_enrichment_disease=DOID:162!6.47e-23!235;DOID:305!8.71e-23!106;DOID:14566!1.21e-21!239;DOID:0050687!8.78e-21!143;DOID:7!1.84e-08!39;DOID:0050686!5.57e-07!137 | |||
|ontology_enrichment_disease_v019=DOID:1749;9.67e-08;14!DOID:305;4.00e-07;106!DOID:7;5.39e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.03e-23,106;DOID:0050687,2.76e-21,143;DOID:162,7.91e-20,235;DOID:14566,1.29e-18,239;DOID:7,4.41e-08,39;DOID:1749,8.86e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!7.90e-14!169;UBERON:0000925!7.90e-14!169;UBERON:0006595!7.90e-14!169;UBERON:0005911!1.18e-11!82;UBERON:0001007!2.00e-10!155;UBERON:0001555!2.00e-10!155;UBERON:0007026!2.00e-10!155;UBERON:0000466!2.81e-10!126;UBERON:0000077!4.90e-10!130;UBERON:0006554!1.37e-09!44;UBERON:0003104!3.19e-09!238;UBERON:0009142!3.19e-09!238;UBERON:0009569!4.49e-09!113;UBERON:0002100!4.90e-09!216;UBERON:0001008!5.59e-09!45;UBERON:0004921!2.05e-08!129;UBERON:0004185!2.05e-08!129;UBERON:0005177!4.04e-08!107;UBERON:0001041!4.30e-08!98;UBERON:0004211!4.76e-08!16;UBERON:0001285!4.76e-08!16;UBERON:0007684!4.76e-08!16;UBERON:0003220!4.76e-08!16;UBERON:0004208!4.76e-08!16;UBERON:0003929!2.21e-07!54;UBERON:0000464!2.29e-07!104;UBERON:0009773!4.09e-07!12;UBERON:0001231!4.09e-07!12;UBERON:0004810!4.09e-07!12;UBERON:0006555!4.66e-07!17;UBERON:0005103!4.66e-07!17;UBERON:0000083!4.66e-07!17;UBERON:0009201!4.66e-07!17;UBERON:0004819!4.66e-07!17;UBERON:0006553!4.66e-07!17;UBERON:0003074!4.66e-07!17;UBERON:0003060!4.66e-07!17;UBERON:0001048!4.76e-07!168;UBERON:0005153!5.35e-07!37 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;2.08e-10;30!UBERON:0001008;2.08e-10;30!UBERON:0006555;2.86e-10;15!UBERON:0004819;2.86e-10;15!UBERON:0001285;2.86e-10;15!UBERON:0007684;2.86e-10;15!UBERON:0004211;7.73e-09;10!UBERON:0009773;7.73e-09;10!UBERON:0001231;7.73e-09;10!UBERON:0004810;7.73e-09;10!UBERON:0005911;1.98e-08;36!UBERON:0000353;2.34e-08;15!UBERON:0001225;3.58e-08;12!UBERON:0008987;3.58e-08;12!UBERON:0002113;1.57e-07;24!UBERON:0011143;1.57e-07;24!UBERON:0004807;6.85e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005911,1.51e-15,82;UBERON:0006554,8.75e-13,47;UBERON:0004119,2.56e-12,160;UBERON:0000925,2.56e-12,160;UBERON:0006595,2.56e-12,160;UBERON:0005177,2.78e-12,101;UBERON:0001008,2.90e-12,48;UBERON:0004211,2.23e-10,15;UBERON:0009773,2.23e-10,15;UBERON:0001231,2.23e-10,15;UBERON:0001285,2.23e-10,15;UBERON:0007684,2.23e-10,15;UBERON:0004208,2.23e-10,15;UBERON:0006555,2.12e-09,16;UBERON:0004819,2.12e-09,16;UBERON:0003929,2.13e-09,54;UBERON:0009569,2.67e-09,112;UBERON:0002100,4.55e-09,199;UBERON:0001007,4.66e-09,145;UBERON:0001555,4.66e-09,145;UBERON:0007026,4.66e-09,145;UBERON:0004810,4.78e-09,10;UBERON:0005157,1.02e-08,47;UBERON:0005153,1.46e-08,37;UBERON:0000353,2.53e-08,15;UBERON:0001225,3.32e-08,12;UBERON:0008987,3.32e-08,12;UBERON:0001041,8.51e-08,87;UBERON:0004921,9.24e-08,118;UBERON:0005172,1.07e-07,54;UBERON:0005173,1.07e-07,54;UBERON:0001048,3.92e-07,160;UBERON:0003914,5.40e-07,117;UBERON:0002417,5.86e-07,60;UBERON:0000916,5.86e-07,60 | |||
|phase1_expression=0.726713517082227,0.428201047781966,0.986680828671798,0,0.893922188854576,0,0,0,0.522371256399677,5.16041266653169,33.4944560626765,4.80571018686379,2.63766978228454,0,0,0,0,0.730310090387373,0,0.369363174230364,0,2.19418305034661,0,0,0.502170558379211,0.458480434487708,0.328402357799783,0.314843125254717,0,0,0,9.19421224478927,23.4940616647035,10.7228662948368,1.93668001450754,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0.28769239232215,0.768482119587302,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0.521482918420201,0.217188844705117,0,0.368277635987565,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0.382273228125229,0,0,0,0,0,0,0.668745981562712,0,0,1.94826728407911,0.111410456885174,0,0,0,0.896639238079726,0.650296737799391,0.822189523018381,0.276350017785848,0.289803085735052,0.14828656316206,0,0,0.226618685395132,0,0,0,0,0,0,0.150575119077773,0.255973222308837,0,0,0,0,0.267440195783507,0.144824403882799,0,0,4.73091478821062,0.722878304769133,1.00267582127178,0.724232594804119,0.795285947051099,0.973269740605272,0.189069634328136,0.221729397462564,0.263504357079378,0,19.3076502795047,5.19098219898201,0,0,0,0.238490624305342,0,0,3.9752481473341,0,1.73570250803797,0.56530794192401,2.51699661725944,2.47606237746061,1.04497483268405,0.516833518338658,0.35576626268671,1.00416183829401,1.20848795132744,1.52054421143703,1.95249646038536,0.735326160691737,1.62028389576352,0.446498641420399,0.22452937262617,1.91439516821648,4.5994991239765,0.949265659568129,2.01521918323448,0,0,11.3384453557059,1.98788780678127,0.886413581652058,0,0.286836620748814,1.41867352879343,2.80338800071154,2.1349799145941,2.96001058100592,0.311211035399766,0.942974704487816,0.653847612453835,0.151357427644931,0.576175924479999,9.13853584151807,0.312160076830321,1.71141546463335,0.747243402759005,1.996386476944,1.29498355494505,0.842704840213491,0.204154171254893,0.859840221182376,0.516628905878827,0,1.48360157567134,1.82032272387605,10.7792721272436,0.673344455816265,0.625592599359821,0.277064115484183,0.438977620880838,0,0.300476117813194,1.13432183160021,0,0.427114777637135,1.05965950579781,0.600182192168805,0.515262646192195,0.772921620136887,0.744467425326359,0.337552664482532,0.68205903612839,1.00973509697646,0.828449087780694,0.161646056818812,0.355009592516614,0.10075209822764,0.169560592310488,7.34391242020528,2.45471508531751,1.72082757233402,0.731842236777572,0,0.348581828608555,0.310983165046111,0.252320850875628,0,0,0.643240938192885,0,0,0,2.48444280083672,2.69735504124963,0.964044119533928,2.20587945464788,2.39667388501647,1.66089433377768,0.404493924480493,0.98110732562673,0.769494313892781,0,4.20725321410337,0.4115740113314,0,0,9.82827216677626,5.90789906681404,1.32438929824395,3.93563003337963,1.71567810298526,20.8525542276389,0,17.1904542823889,2.59247646443883,4.56131627434455,2.07986957055916,0,0,1.52631302506568,1.58803092537181,1.38895653772983,0.380508304469197,7.11183958163348,5.15091697256924,0,0,0,0.93733833986777,2.01578553838631,6.238104278665,6.44821363460508,4.06887513919547,14.568541808278,0,0,0.207328115540772,0,0.12624243342638,0,1.14596527667483,0,0,0.308482478109971,0.901029173531752,0.285826432630578,1.45770409648969,0.43596006883328,0.5867062865676,0.387815147273333,3.57656445851882,1.690605505112,1.59562869950922,2.08014873822732,0,0,0.532844358032199,2.7165818795048,8.68194568626309,1.64648067356154,0.325736184293735,2.48774364119782,0,0.904318131178758,0,0.199945982364114,0,0,0,1.19812427745791,1.14861935834114,0,0.144781306667579,0,0,6.164682919644,0.197030760201927,0,0.128343036279748,0,0,1.54657762555539,0,0.637938751653163,0,0,0,0.12269149171914,0,0.542530047399471,0.207970861530807,0.535286966391485,0.946214490203608,0.117141414992713,1.20378439891088,4.5481500811197,2.0694614258501,0,0.553107505625109,0.695068915744663,1.76221041716467,0,0,0,0.106727557803444,2.42502057157008,9.98612637062982,8.46692821323105,0.992431231275107,1.07423381301644,0.561320188866147,1.40953064181271,0.511707249066704,1.60853921143608,0,0.308419387605311,1.06537035187876,0,0,0.116210378459959,5.68039413080624,4.0101294060657,4.60404944679482,1.60740227430449,2.36718518408732,0.524497659837696,24.8159787099077,8.62571775569445,10.980896768476,7.30696123266303,2.74434235121477,3.4120015221269,2.38131187387122,0.215915916102139,3.08454505380579,1.89662506280697,3.51182841698397,12.4889373792069,28.2565843035766,5.1491193586101,0,0.522870902049801,0,0,2.60302715731442,0.309123034943167,0.27470839445503,0.165018999841176,13.208107373912,8.45078319847478,0,3.86682873168488,0.462145851343933,0.921022048356777,0.413509717453592,1.07420244868274,0.435050081742686,0.93749290157711,3.47224939022276,1.32227932288782,3.45942121257191,0.893288987462089,3.0347334256665,1.85938219718914,0.62962469366128,0,1.54016790088044,1.59691809095107,0,0.18532421910392,1.00187420719394,0.372158369359667,0,1.14378116354295,0.255897791311334,0.855877976067841,0,1.5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| |||
|short_description=p4@TRIB3 | |||
}} |
Revision as of 09:46, 21 January 2014
Short description: | p4@TRIB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TRIB3_5end |
Coexpression cluster: | C2615_Alveolar_Renal_Urothelial_Tracheal_Keratinocyte_renal_Trabecular |
Association with transcript: | 198bp_to_NM_021158, uc002wdm.2_5end |
EntrezGene: | TRIB3 |
HGNC: | 16228 |
UniProt: | Q96RU7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.19e-51 | 253 |
endodermal cell | 4.51e-18 | 58 |
endo-epithelial cell | 2.38e-13 | 42 |
kidney cell | 1.34e-11 | 17 |
kidney epithelial cell | 1.34e-11 | 17 |
epithelial cell of nephron | 2.23e-10 | 15 |
squamous epithelial cell | 8.05e-10 | 63 |
embryonic cell | 1.02e-09 | 250 |
kidney tubule cell | 4.78e-09 | 10 |
nephron tubule epithelial cell | 4.78e-09 | 10 |
kidney cortical cell | 3.32e-08 | 12 |
renal cortical epithelial cell | 3.32e-08 | 12 |
respiratory epithelial cell | 6.98e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
endo-epithelium | 1.51e-15 | 82 |
urinary system structure | 8.75e-13 | 47 |
endoderm-derived structure | 2.56e-12 | 160 |
endoderm | 2.56e-12 | 160 |
presumptive endoderm | 2.56e-12 | 160 |
trunk region element | 2.78e-12 | 101 |
renal system | 2.90e-12 | 48 |
nephron epithelium | 2.23e-10 | 15 |
renal tubule | 2.23e-10 | 15 |
nephron tubule | 2.23e-10 | 15 |
nephron | 2.23e-10 | 15 |
uriniferous tubule | 2.23e-10 | 15 |
nephrogenic mesenchyme | 2.23e-10 | 15 |
excretory tube | 2.12e-09 | 16 |
kidney epithelium | 2.12e-09 | 16 |
gut epithelium | 2.13e-09 | 54 |
subdivision of trunk | 2.67e-09 | 112 |
trunk | 4.55e-09 | 199 |
digestive system | 4.66e-09 | 145 |
digestive tract | 4.66e-09 | 145 |
primitive gut | 4.66e-09 | 145 |
nephron tubule epithelium | 4.78e-09 | 10 |
epithelial fold | 1.02e-08 | 47 |
epithelial bud | 1.46e-08 | 37 |
parenchyma | 2.53e-08 | 15 |
cortex of kidney | 3.32e-08 | 12 |
renal parenchyma | 3.32e-08 | 12 |
foregut | 8.51e-08 | 87 |
subdivision of digestive tract | 9.24e-08 | 118 |
abdomen element | 1.07e-07 | 54 |
abdominal segment element | 1.07e-07 | 54 |
primordium | 3.92e-07 | 160 |
epithelial tube | 5.40e-07 | 117 |
abdominal segment of trunk | 5.86e-07 | 60 |
abdomen | 5.86e-07 | 60 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.03e-23 | 106 |
cell type cancer | 2.76e-21 | 143 |
cancer | 7.91e-20 | 235 |
disease of cellular proliferation | 1.29e-18 | 239 |
disease of anatomical entity | 4.41e-08 | 39 |
squamous cell carcinoma | 8.86e-08 | 14 |