FFCP PHASE1:Hg19::chr20:58497478..58497482,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=10388 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11490 | |||
|TSSclassifier=not | |||
|UniProt=Q9BX26 | |||
|association_with_transcript=0bp_to_Y08982_5end | |||
|coexpression_cluster_id=C2624 | |||
|description=CAGE_peak_6_at_SYCP2_5end | |||
|id=chr20:58497478..58497482,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002535;1.26e-17;2!CL:0000039;1.08e-10;7!CL:0000586;1.08e-10;7!CL:0002563;8.20e-09;4!CL:0000082;5.42e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002535,9.85e-18,2;CL:0000039,1.04e-10,7;CL:0000586,1.04e-10,7;CL:0002563,7.00e-09,4;CL:0000082,5.60e-07,19 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.98e-13;10!UBERON:0005564;3.98e-13;10!UBERON:0008425;8.67e-10;1 | |||
|ontology_enrichment_disease=DOID:305!5.95e-08!106 | |||
|ontology_enrichment_disease_v019=DOID:1325;1.05e-18;7!DOID:3904;1.05e-18;7!DOID:4362;1.68e-15;5!DOID:5093;2.50e-09;4!DOID:1612;2.50e-09;4!DOID:6193;3.25e-09;1!DOID:1324;7.93e-09;15!DOID:5409;8.20e-09;4!DOID:3905;1.53e-08;9!DOID:0050615;2.78e-08;16 | |||
|ontology_enrichment_disease_v019_2=DOID:1325,1.15e-18,7;DOID:3904,1.15e-18,7;DOID:4362,1.60e-15,5;DOID:305,2.10e-14,106;DOID:0050687,3.19e-13,143;DOID:162,4.13e-10,235;DOID:14566,7.95e-10,239;DOID:6193,1.84e-09,1;DOID:5093,2.55e-09,4;DOID:1612,2.55e-09,4;DOID:0050686,6.85e-09,137;DOID:5409,8.21e-09,4;DOID:1324,8.28e-09,15;DOID:3905,1.57e-08,9;DOID:0050615,2.89e-08,16 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0006955;1.26e-17;2!UBERON:0004801;1.26e-17;2!UBERON:0000473;2.35e-16;8!UBERON:0000002;5.21e-13;6!UBERON:0001560;5.21e-13;6!UBERON:0003135;5.97e-12;11!UBERON:0005911;6.37e-10;36!UBERON:0004913;3.25e-09;1!UBERON:0003703;3.25e-09;1!UBERON:0001174;3.25e-09;1!UBERON:0004914;3.25e-09;1!UBERON:0001242;8.20e-09;4!UBERON:0001262;8.20e-09;4!UBERON:0004786;8.20e-09;4!UBERON:0004808;8.20e-09;4!UBERON:0001277;8.20e-09;4!UBERON:0003133;3.46e-07;44!UBERON:0004802;5.42e-07;19!UBERON:0000115;5.42e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006955,9.85e-18,2;UBERON:0004801,9.85e-18,2;UBERON:0000473,2.40e-16,8;UBERON:0000002,5.01e-13,6;UBERON:0001560,5.01e-13,6;UBERON:0003135,6.06e-12,11;UBERON:0004913,4.50e-09,1;UBERON:0003703,4.50e-09,1;UBERON:0001174,4.50e-09,1;UBERON:0004914,4.50e-09,1;UBERON:0001242,7.00e-09,4;UBERON:0001262,7.00e-09,4;UBERON:0004786,7.00e-09,4;UBERON:0004808,7.00e-09,4;UBERON:0001277,7.00e-09,4;UBERON:0003133,1.55e-07,48;UBERON:0004802,5.60e-07,19;UBERON:0000115,5.60e-07,19 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0,0,0,0,0,0,0,0.553995408531877,0.200544447470142,0.651032612147555,0,0,0,0.290796477559129,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0.209658645508376,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0.954053754535364,0,0,0.382273228125229,0,0,0,0,0,0.205601498999509,0,0,0.473447805734733,0,0.445641827540694,0.294605907474837,0,0,0.128091319725675,0.130059347559878,0.164437904603676,0,0.289803085735052,0.296573126324121,0,0,0.113309342697566,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0.534880391567015,0.289648807765598,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.523916301990851,0,0,0,0,0.26591592103773,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0.247266929278557,0,0,0,0.125118519871964,0,0,0.30648779579902,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0.590789906681404,0,1.35287282397425,0,0.109750285408626,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0.985326475791887,0.352193736052904,0,0.144119953416961,0.12624243342638,0.063497894292169,0.381988425558278,0,0,0.102827492703324,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0.197030760201927,0.646882724578552,0.898401253958239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213455115606889,0,0,0,0.248107807818777,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0.725156697549733,0,0,0,0,0.131124414959424,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0.103041011647722,0.824125183365091,1.23764249880882,0,0,0,0.096670718292122,0,0,0,0.214840489736547,0.145016693914229,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318203247925937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0.569647187174163,0.238231775457789,0,0,0,0.79312517629427,0.213648142254946,0,0,0,0,0,1.11598390910176,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0.36408156524854,0,0,0,0.296964680832639,0,0.994147647766298,0.281338832821026,0,0,0,0,0,4.78672220923124,0,0,0,0,0,1.02314474045374,0.0986434056369336,0,0,0,0.0927680981618513,0,3.38556089410803,4.72283999979457,0,0.455173793141999,2.54253650292766,4.01859059005492,0,0.291604613383254,0,0,0.241192877250816,0,0,0,0,0,0.139423744278603,0.0769502585037971,0.797594390929008,0,0,1.4124158349861,0,0,0,0,0,0,0,0,0,0.37950746544837,0,0.210998064528027,1.46909527343233,1.41353071433941,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0.126373159256976,0.300646838828985,0,0,0,0.627865836814451,1.19472429772959,0.569219092059585,0,0,0,2.87295381715328,0,1.89184635718778,0,0,0.0821154570532092,0,0,0,0,0,0.126621591911757,1.56441106187842,0.400794101257669,0.213452994739353,0.999048047910651,0,0.687219576995494,0,0,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0.399358000997982,0,0,0.0671834724867263,0,0,0,0,0,0.0984274815147488,0,0,0.136203406111576,0.160753148465019,0,0,0,0,0.182248669974074,0,0.0788057072991982,0,0,0,0.383830394638891,0,0,0,0,0,0,0,0,0,0.679872549120754,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0.785270481251171,0,0.244052529803926,0.1251909307065,0,0.332787154610557,0,0,0,0.454947352624943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0.489473409012935,0,0,0.219284049578707,0,0,0,0,0,0,0.138258436151731,0,0,0.163565394255844,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0.319267718114302,0,0,0.0691572524642179,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18284868973636,0.135075169236789,0,0,0.126831620387814,0,0,0.992422356778588,0,0,0,0,0,0,0.177404740325278,0,0,0.271878931907327,0.131545547125698,0.118193840883968,0.111231401892069,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0.4582137370881,0.31020638566432,0,0.111855431797792,0,0,0,0,0,0,2.10545517115895,0,0.83244063544298,1.1294608203896,0,1.50962843566674,0.154348316215889,0,0,0,0,0.392616934229891,0,0,0,0.0939839179798536,0,0,0.71421575442263,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0.101988829741982,1.3360870263278,0.0918948995348449,1.25353769646188,3.41004141982077,2.67964130156179,0,0,0,0.23806443146374,0.129177819672012,0.0620747142958579,0,0.12729431655633,0.202117188958219,0,0.342233301085281,0,0.0717222053926763,0.332660356546013,0.325613074443898,2.7749109928206,0,0,0,0,0,0.665756774185513,0,0 | |||
|short_description=p6@SYCP2 | |||
}} |
Revision as of 12:34, 21 January 2014
Short description: | p6@SYCP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_SYCP2_5end |
Coexpression cluster: | C2624_argyrophil_breast_bronchogenic_small_transitionalcell_epidermoid_gall |
Association with transcript: | 0bp_to_Y08982_5end |
EntrezGene: | SYCP2 |
HGNC: | 11490 |
UniProt: | Q9BX26 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 9.85e-18 | 2 |
germ line cell | 1.04e-10 | 7 |
germ cell | 1.04e-10 | 7 |
intestinal epithelial cell | 7.00e-09 | 4 |
epithelial cell of lung | 5.60e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
uterine epithelium | 9.85e-18 | 2 |
cervix epithelium | 9.85e-18 | 2 |
testis | 2.40e-16 | 8 |
uterine cervix | 5.01e-13 | 6 |
neck of organ | 5.01e-13 | 6 |
male reproductive organ | 6.06e-12 | 11 |
hepatopancreatic ampulla | 4.50e-09 | 1 |
extrahepatic bile duct | 4.50e-09 | 1 |
common bile duct | 4.50e-09 | 1 |
duodenal papilla | 4.50e-09 | 1 |
intestinal mucosa | 7.00e-09 | 4 |
wall of intestine | 7.00e-09 | 4 |
gastrointestinal system mucosa | 7.00e-09 | 4 |
gastrointestinal system epithelium | 7.00e-09 | 4 |
intestinal epithelium | 7.00e-09 | 4 |
reproductive organ | 1.55e-07 | 48 |
respiratory tract epithelium | 5.60e-07 | 19 |
lung epithelium | 5.60e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
bronchus cancer | 1.15e-18 | 7 |
bronchogenic carcinoma | 1.15e-18 | 7 |
cervical cancer | 1.60e-15 | 5 |
carcinoma | 2.10e-14 | 106 |
cell type cancer | 3.19e-13 | 143 |
cancer | 4.13e-10 | 235 |
disease of cellular proliferation | 7.95e-10 | 239 |
epithelioid sarcoma | 1.84e-09 | 1 |
thoracic cancer | 2.55e-09 | 4 |
breast cancer | 2.55e-09 | 4 |
organ system cancer | 6.85e-09 | 137 |
lung small cell carcinoma | 8.21e-09 | 4 |
lung cancer | 8.28e-09 | 15 |
lung carcinoma | 1.57e-08 | 9 |
respiratory system cancer | 2.89e-08 | 16 |