FFCP PHASE1:Hg19::chr3:23986824..23986848,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9975 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7963 | |||
|TSSclassifier=strong | |||
|UniProt=Q6NSM0 | |||
|association_with_transcript=-17bp_to_ENST00000383773_5end | |||
|coexpression_cluster_id=C22 | |||
|description=CAGE_peak_2_at_NR1D2_5end | |||
|id=chr3:23986824..23986848,+ | |||
|ontology_enrichment_celltype=CL:0000738!6.35e-21!140;CL:0002057!1.75e-16!42;CL:0002087!4.83e-16!119;CL:0000860!1.70e-15!45;CL:0002031!2.54e-15!124;CL:0000766!2.44e-13!76;CL:0000557!1.35e-11!71;CL:0002009!6.02e-11!65;CL:0000791!4.88e-10!18;CL:0000789!4.88e-10!18;CL:0002420!4.88e-10!18;CL:0002419!4.88e-10!18;CL:0000790!4.88e-10!18;CL:0002194!4.93e-10!63;CL:0000576!4.93e-10!63;CL:0000040!4.93e-10!63;CL:0000559!4.93e-10!63;CL:0000839!3.48e-09!70;CL:0000037!1.95e-08!172;CL:0000566!1.95e-08!172;CL:0000625!2.44e-07!11;CL:0002032!7.96e-07!165;CL:0000837!7.96e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.54e-11;33!CL:0002057;4.54e-11;33!CL:0000791;4.34e-10;18!CL:0000789;4.34e-10;18!CL:0002419;4.34e-10;18!CL:0000576;3.52e-08;48!CL:0000473;2.02e-07;39!CL:0000234;2.02e-07;39!CL:0000625;2.34e-07;11!CL:0000766;2.77e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,6.80e-21,136;CL:0000860,1.59e-16,42;CL:0002057,1.59e-16,42;CL:0002087,5.34e-16,115;CL:0002031,2.12e-15,120;CL:0000766,1.03e-13,72;CL:0000473,1.49e-13,48;CL:0000234,1.49e-13,48;CL:0000557,6.25e-12,67;CL:0002009,2.70e-11,61;CL:0002194,2.37e-10,59;CL:0000576,2.37e-10,59;CL:0000040,2.37e-10,59;CL:0000559,2.37e-10,59;CL:0000791,4.62e-10,18;CL:0000789,4.62e-10,18;CL:0002420,4.62e-10,18;CL:0002419,4.62e-10,18;CL:0000790,4.62e-10,18;CL:0000839,1.74e-09,66;CL:0000037,2.91e-08,168;CL:0000625,2.35e-07,11 | |||
|ontology_enrichment_development_v019=CL:0002057;4.00e-12;42!CL:0000790;4.34e-10;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.72e-12!115;UBERON:0002390!5.76e-10!102;UBERON:0003061!5.76e-10!102;UBERON:0002371!1.03e-09!80;UBERON:0001474!2.35e-09!86;UBERON:0002193!8.27e-09!112;UBERON:0004765!4.68e-07!101;UBERON:0001434!4.68e-07!101;UBERON:0002780!7.59e-07!41;UBERON:0001890!7.59e-07!41;UBERON:0006240!7.59e-07!41 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.82e-12,114;UBERON:0002390,3.90e-10,98;UBERON:0003061,3.90e-10,98;UBERON:0002371,4.90e-10,76;UBERON:0001474,1.18e-09,82;UBERON:0002193,5.77e-09,108;UBERON:0002405,6.77e-08,93;UBERON:0004765,1.53e-07,90;UBERON:0002780,8.73e-07,41;UBERON:0001890,8.73e-07,41;UBERON:0003080,8.73e-07,41;UBERON:0006240,8.73e-07,41 | |||
|phase1_expression=7.08545679155171,4.49611100171065,4.93340414335899,5.00366491765652,1.34088328328186,3.48935409640147,0,0.631719873426831,0.783556884599516,0.491467873003018,0,0.873765488520689,0.527533956456907,2.35156070624089,3.97676850873499,5.3786011716142,3.01347264011988,4.38186054232424,3.90346239032406,0.861847406537515,0,0.313454721478088,1.71741592278634,2.73748850145768,1.75759695432724,0.458480434487708,0.656804715599566,0.708397031823113,31.0757778710634,81.3718323966091,55.5789882704713,4.59710612239464,2.10844143144775,2.21852406100073,2.63388481973026,3.2698923472107,10.2760153767197,53.1835592190602,63.3720454005648,57.5078807397007,3.35873211359887,3.56283032620878,2.83333124397605,8.43309784921475,9.06902264853143,12.1292030593908,9.99444858694444,6.98985409637104,13.3173739484895,8.63077176966451,12.5518746199259,13.9524515634265,14.1345729102014,15.4916324060118,20.3139729891513,10.3533286748433,8.46009065179322,11.9103446755895,11.0190201253525,11.2325159476633,15.344091019177,9.23583640522805,12.1672831149195,16.1965405202424,7.83564944297177,7.94339314567596,8.09668923694247,10.0499466102697,13.5585558789252,12.5969529928968,11.502590550034,11.7848843516021,15.1901945971625,13.0978277513404,13.8192794977278,17.4016675771952,11.4575203769425,11.1130900702715,7.23265140136861,24.7961087054886,12.9295840179409,14.0651398398768,10.5597746676794,12.0150494477669,12.4531295540898,23.4701622411579,11.6114836240444,10.9202963591352,15.2040320740518,11.4486450544244,54.0752320653976,58.1364817477229,56.1941645344086,27.7559790015954,60.5349248020059,4.21414535640123,88.7161063213387,119.082261112997,137.341801331672,10.0311897234407,54.4290185278096,53.0261542422901,38.9653456815823,8.69001563704354,53.9128810678952,45.1929144950587,26.2679747852065,10.1192142583283,10.4047478047903,5.26201294731764,8.29050053357545,10.4329110864619,41.9650973748631,35.8504709640216,42.8595647600405,6.91186990455154,64.7642634187247,62.5401950778386,36.4348356508084,17.5210977878253,14.3238359848412,19.9594929334159,19.2736152419549,13.8225540046772,21.2382235138988,12.5491943583329,13.9591759476578,126.205821258683,139.068901807424,86.460169118031,0,1.34140171940727,1.02290049474824,9.39741796199872,6.01605492763067,6.80778639115871,6.36228757640879,6.32625331393427,2.83604451492204,1.10864698731282,2.3715392137144,4.38779902917337,0,1.11235332835329,2.27183175558278,2.96020553408754,3.58986493400936,28.618874916641,28.0277506282263,38.6315801382748,1.59009925893364,0,2.08284300964557,5.08777147731609,3.35599548967925,4.12677062910101,2.50793959844173,2.32575083252396,4.26919515224052,5.69025041699939,2.81980521976403,4.56163263431108,6.58967555380058,5.14728312484216,1.62028389576352,5.53658315361295,2.91888184414021,2.59006405111641,0,1.89853131913626,3.84723662253855,31.6273001846552,42.6558290563158,0,7.9515512271251,10.0038104215018,4.63432132846266,4.58938593198102,4.61068896857864,1.12135520028461,0,5.42668606517752,2.17847724779836,4.17603083416033,1.47115712802113,0.605429710579726,1.15235184896,0.70296429550139,1.24864030732128,0.570471821544449,0.896692083310806,1.52664848236894,1.94247533241758,0.421352420106746,1.02077085627447,1.35117749042945,2.58314452939414,7.12801714369232,3.70900393917835,1.82032272387605,0,0.673344455816265,1.00094815897571,1.38532057742091,2.63386572528503,4.59731693698529,4.95785594391769,1.47461838108027,11.660326319776,4.91181994282705,2.33125091275518,5.10154863343484,5.04957393268351,6.44101350114073,4.09457083929498,9.28269827326964,9.06164147999147,7.32057945307932,7.17989209409935,2.58633690910099,8.87523981291536,7.45565526884538,3.39121184620975,4.25173876959253,5.72766853240753,2.86804595389004,3.78118489001746,2.91565490307268,3.02104251460748,2.69518743039963,2.27088765788066,4.01475094983413,1.56449532329816,1.92972281457866,5.52539685409922,0,0.721879481669586,1.18306800039844,2.86593973132773,0.964044119533928,1.7647035637183,2.39667388501647,1.66089433377768,2.69662616320329,1.96221465125346,0.769494313892781,5.16708818237254,0,0,0,10.1404027857465,1.96565443335525,6.49868897349544,3.97316789473185,1.72183813960359,2.23038153388083,1.53650399572076,1.1240175325762,1.50793458617446,1.85176890317059,0.325808305310325,0,4.3299402607582,5.91245065372892,2.81780866165972,3.75352764178792,3.24089858803628,5.89787871927255,3.1608175918371,6.00940313466411,2.70838706696137,1.8720341211139,2.37809859661965,0.93733833986777,3.52762469217605,2.83550194484773,5.1943943167652,3.48760726216754,1.15014803749563,3.4486426652716,5.28290604079356,8.50045273717165,7.49423757768199,10.0993946741104,1.14296209725904,0.763976851116555,0,0,1.33675740514321,0.901029173531752,1.14330573052231,0.784917590417525,0,1.466765716419,5.68795549334222,3.57656445851882,3.381211010224,5.85063856486715,4.16029747645464,0.257207374262142,0,0,2.28764789853036,0,0,3.25736184293735,1.42156779497018,0,0.904318131178758,3.48613383440118,3.69900067373611,1.2162378064119,7.03159928004977,4.216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| |||
|short_description=p2@NR1D2 | |||
}} |
Revision as of 17:53, 21 January 2014
Short description: | p2@NR1D2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_NR1D2_5end |
Coexpression cluster: | C22_CD4_CD8_Natural_Basophils_CD14_Peripheral_CD19 |
Association with transcript: | -17bp_to_ENST00000383773_5end |
EntrezGene: | NR1D2 |
HGNC: | 7963 |
UniProt: | Q6NSM0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 6.80e-21 | 136 |
classical monocyte | 1.59e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.59e-16 | 42 |
nongranular leukocyte | 5.34e-16 | 115 |
hematopoietic lineage restricted progenitor cell | 2.12e-15 | 120 |
myeloid leukocyte | 1.03e-13 | 72 |
defensive cell | 1.49e-13 | 48 |
phagocyte | 1.49e-13 | 48 |
granulocyte monocyte progenitor cell | 6.25e-12 | 67 |
macrophage dendritic cell progenitor | 2.70e-11 | 61 |
monopoietic cell | 2.37e-10 | 59 |
monocyte | 2.37e-10 | 59 |
monoblast | 2.37e-10 | 59 |
promonocyte | 2.37e-10 | 59 |
mature alpha-beta T cell | 4.62e-10 | 18 |
alpha-beta T cell | 4.62e-10 | 18 |
immature T cell | 4.62e-10 | 18 |
mature T cell | 4.62e-10 | 18 |
immature alpha-beta T cell | 4.62e-10 | 18 |
myeloid lineage restricted progenitor cell | 1.74e-09 | 66 |
hematopoietic stem cell | 2.91e-08 | 168 |
CD8-positive, alpha-beta T cell | 2.35e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
adult organism | 4.82e-12 | 114 |
hematopoietic system | 3.90e-10 | 98 |
blood island | 3.90e-10 | 98 |
bone marrow | 4.90e-10 | 76 |
bone element | 1.18e-09 | 82 |
hemolymphoid system | 5.77e-09 | 108 |
immune system | 6.77e-08 | 93 |
skeletal element | 1.53e-07 | 90 |
regional part of forebrain | 8.73e-07 | 41 |
forebrain | 8.73e-07 | 41 |
anterior neural tube | 8.73e-07 | 41 |
future forebrain | 8.73e-07 | 41 |