FFCP PHASE1:Hg19::chr4:177713372..177713387,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7424 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12682 | |||
|TSSclassifier=strong | |||
|UniProt=Q6FH59 | |||
|association_with_transcript=77bp_to_CR541897_5end | |||
|description=CAGE_peak_14_at_VEGFC_5end | |||
|id=chr4:177713372..177713387,- | |||
|ontology_enrichment_celltype=CL:0000055!1.95e-10!180;CL:0000057!7.75e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0000511;4.71e-17;1!CL:0002625;4.71e-17;1!CL:0000216;4.71e-17;1!CL:0002589;5.93e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000511,4.72e-17,1;CL:0002625,4.72e-17,1;CL:0000216,4.72e-17,1;CL:0002589,8.74e-09,2 | |||
|ontology_enrichment_development_v019=UBERON:0005795;4.95e-07;10 | |||
|ontology_enrichment_disease=DOID:2394!3.92e-10!14 | |||
|ontology_enrichment_disease_v019=DOID:0060084;2.95e-21;3!DOID:127;2.95e-21;3!DOID:2394;1.04e-17;14!DOID:0060072;3.32e-16;4!DOID:120;2.46e-09;27!DOID:193;1.04e-08;29 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,4.94e-21,3;DOID:127,4.94e-21,3;DOID:2394,7.65e-18,14;DOID:0060072,4.87e-16,4;DOID:120,2.11e-09,27;DOID:193,9.02e-09,29 | |||
|ontology_enrichment_uberon=UBERON:0000161!1.94e-09!35;UBERON:0003102!2.95e-08!95;UBERON:0004122!6.39e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002118;5.80e-28;5!UBERON:0001136;4.71e-17;1!UBERON:0001343;4.71e-17;1!UBERON:0004910;4.71e-17;1!UBERON:0004813;4.71e-17;1!UBERON:0002171;1.41e-16;1!UBERON:0006518;1.41e-16;1!UBERON:0008949;1.41e-16;1!UBERON:0000101;1.41e-16;1!UBERON:0002167;1.41e-16;1!UBERON:0000991;5.21e-12;21!UBERON:0000992;3.56e-11;13!UBERON:0003133;1.07e-10;44!UBERON:0003134;2.18e-09;33!UBERON:0004909;3.43e-09;2!UBERON:0001529;5.93e-09;2!UBERON:0007204;5.93e-09;2!UBERON:0005156;7.18e-09;59!UBERON:0000990;7.18e-09;59!UBERON:0000474;1.23e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002118,3.66e-28,5;UBERON:0001136,4.72e-17,1;UBERON:0001343,4.72e-17,1;UBERON:0004910,4.72e-17,1;UBERON:0005154,4.72e-17,1;UBERON:0005295,4.72e-17,1;UBERON:0004813,4.72e-17,1;UBERON:0005297,4.72e-17,1;UBERON:0005294,4.72e-17,1;UBERON:0010141,4.72e-17,1;UBERON:0005891,4.72e-17,1;UBERON:0002171,7.57e-17,1;UBERON:0006518,7.57e-17,1;UBERON:0008949,7.57e-17,1;UBERON:0000101,7.57e-17,1;UBERON:0002167,7.57e-17,1;UBERON:0005156,2.63e-12,59;UBERON:0000990,2.63e-12,59;UBERON:0000991,4.52e-12,21;UBERON:0009196,4.52e-12,21;UBERON:0009117,4.52e-12,21;UBERON:0005564,4.52e-12,21;UBERON:0004176,1.55e-11,22;UBERON:0003133,2.93e-11,48;UBERON:0000992,2.99e-11,13;UBERON:0003134,2.54e-10,37;UBERON:0000474,2.54e-10,37;UBERON:0003100,2.58e-09,41;UBERON:0004909,3.43e-09,2;UBERON:0001529,8.74e-09,2;UBERON:0007204,8.74e-09,2;UBERON:0002323,2.21e-08,46;UBERON:0004458,7.24e-08,49;UBERON:0003886,3.92e-07,54 | |||
|phase1_expression=0.181678379270557,0.856402095563933,0.140954404095971,0,1.34088328328186,0,0,0.631719873426831,0,0,0,0,0,0.247532705920093,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0.795285947051099,0.973269740605272,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0.56530794192401,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0.17859945656816,0,0,0,0,0.366403487860815,0,0,0,0.993943903390637,0.25326102332916,0.397227542439656,0.286836620748814,0.709336764396714,0,0,0,0.311211035399766,0.134710672069688,0,0,0,0,0,0,0.149448680551801,0.117434498643765,0.161872944368132,0,0.204154171254893,0.368502951935304,0.103325781175765,0,0.247266929278557,0,0,0,0,0,0,0.30648779579902,0.45071417671979,0,0.179389635688862,0,0.211931901159562,0,0,0,0.18611685633159,0.168776332241266,0.0974370051611986,0,0.368199594569197,0.161646056818812,0,0.503760491138201,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0.16798212819886,0,0.179117045405697,0,0,0,0,0,0,0,0,0.381988425558278,0,0,0,0,0,0,0,0,0.775630294546667,0,0,0.26593811658487,0,0.257207374262142,0,0.266422179016099,0.142977993658148,0,0,0,0,0,0.602878754119172,0,0.099972991182057,0,0,0,0,0,0,0.579125226670317,1.2328579353023,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0.207970861530807,0.356857977594324,0,0,0.300946099727719,0,0,0,0.184369168541703,0.521301686808497,0.195801157462741,0,0,0,0,0,0,0,0.992431231275107,0.153461973288062,0.841980283299221,0.256278298511402,0,0.160853921143607,0,0.154209693802656,0.355123450626254,0,0.519254429183621,0.232420756919918,0,2.00506470303285,0.276242966807689,0.574072240823034,0.364182336013434,0.917870904715969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247528499761764,0,0,3.21367859688319,0.580024309752732,0.154048617114644,0,0,0,0,0.0852266274161009,0.0890320356467374,0.330569830721956,0.768760269460425,0.127612712494584,0.2023155617111,0.464845549297286,0.31481234683064,0.6970372701606,0.308033580176089,0,0.869932992075073,0,1.00187420719394,0,0,0,0,0,0.636406495851874,0.78494864019923,0,0.274537029736055,0.117812402345686,0.404364963146632,0,0,0,0.243713489631284,0,0.409499734223957,0,0,0,0,0.438450885253763,0,0,0,0,0.281695602532241,0,0,0,0.354761064070598,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879049075631364,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0.311039587661807,0,0,0,0.197286811273867,0,0,0,0,0,0.260427761085233,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307801034015188,0,0,0,0,0,0.274792780205587,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0.123563938946503,0,0,0,0,0,0,0.485560759068186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274083849293502,0.19871461170299,0,0,0,0.213452994739353,0,0,0.114536596165916,0,0,0.124252535565433,0,0,0,0,0.288950589901519,0,0,0,0,0,0.279282401272254,0.458320848023367,0.717873024576814,0,0.429226048136571,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0.633602019116439,0,0,0,0,0,1.08599920350743,0,1.30634944043764,0,0,0.340776043570843,0,0,0,0,0,0,0,0.320362237703084,0.314408610199332,1.65695622138878,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0.233713309847224,0.554805861502613,0.378806010550178,0.251567901752575,0.889811221596536,0.228840068396924,0.151230923763239,0,0.443565449968902,0.159296767163702,0.449803112163605,0.155262956876259,0.414706207840855,0.53168342911599,1.5652351854352,0.300515217994437,0.761610424337591,0,1.09109195521536,0.107410557042488,1.85613503951397,1.59238355479446,0,0.343395705182793,0,0,0,0,0,0.226705925512272,0,0,0,0,0.438568099157414,0.353378291891762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,0,0.3062454773532,0,0,0,0,0,0.0691572524642179,0,0,0.0981477185010256,0,0.183428598521679,0.231051332300676,0.762764190934334,0,0,0.0752103283492573,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0.115233987555779,0,0,0,0.118193840883968,0,0.078493092850514,0,0,0,0.215927591218621,0,0.0714765441766563,0,0,0,0,0.62164849248911,0,0.691259661814092,0,0.473328002922261,0.340853619036631,0.423387050190929,0,0,0,0,0,0,0,0.307988420568741,0,0.485710993059139,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0.169927114687817,0.0939839179798536,0.386747327841463,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639701945702943,0.23806443146374,0,0.124149428591716,0.112131862580613,0.445530107947154,0.202117188958219,0.217716747896961,0.342233301085281,0.0673520530145875,0.286888821570705,0,0.162806537221949,0.853818767021724,0,0,0,0.122241444182866,0.813792356631477,0,0,0 | |||
|short_description=p14@VEGFC | |||
}} |
Revision as of 04:07, 22 January 2014
Short description: | p14@VEGFC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_14_at_VEGFC_5end |
Coexpression cluster: | NA |
Association with transcript: | 77bp_to_CR541897_5end |
EntrezGene: | VEGFC |
HGNC: | 12682 |
UniProt: | Q6FH59 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
androgen binding protein secreting cell | 4.72e-17 | 1 |
seminiferous tubule epithelial cell | 4.72e-17 | 1 |
Sertoli cell | 4.72e-17 | 1 |
smooth muscle cell of the brachiocephalic vasculature | 8.74e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
right ovary | 3.66e-28 | 5 |
mesothelium | 4.72e-17 | 1 |
seminiferous tubule of testis | 4.72e-17 | 1 |
epithelium of male gonad | 4.72e-17 | 1 |
epithelial cord | 4.72e-17 | 1 |
sex cord | 4.72e-17 | 1 |
seminiferous tubule epithelium | 4.72e-17 | 1 |
testis sex cord | 4.72e-17 | 1 |
genital ridge | 4.72e-17 | 1 |
primitive sex cord of indifferent gonad | 4.72e-17 | 1 |
coelomic epithelium | 4.72e-17 | 1 |
lower lobe of right lung | 7.57e-17 | 1 |
right lung lobe | 7.57e-17 | 1 |
lower lobe of lung | 7.57e-17 | 1 |
lobe of lung | 7.57e-17 | 1 |
right lung | 7.57e-17 | 1 |
reproductive structure | 2.63e-12 | 59 |
reproductive system | 2.63e-12 | 59 |
gonad | 4.52e-12 | 21 |
indifferent external genitalia | 4.52e-12 | 21 |
indifferent gonad | 4.52e-12 | 21 |
gonad primordium | 4.52e-12 | 21 |
external genitalia | 1.55e-11 | 22 |
reproductive organ | 2.93e-11 | 48 |
female gonad | 2.99e-11 | 13 |
female reproductive organ | 2.54e-10 | 37 |
female reproductive system | 2.54e-10 | 37 |
female organism | 2.58e-09 | 41 |
epithelium of gonad | 3.43e-09 | 2 |
brachiocephalic artery | 8.74e-09 | 2 |
brachiocephalic vasculature | 8.74e-09 | 2 |
body cavity | 2.21e-08 | 46 |
body cavity or lining | 7.24e-08 | 49 |
body cavity precursor | 3.92e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 4.94e-21 | 3 |
leiomyoma | 4.94e-21 | 3 |
ovarian cancer | 7.65e-18 | 14 |
benign neoplasm | 4.87e-16 | 4 |
female reproductive organ cancer | 2.11e-09 | 27 |
reproductive organ cancer | 9.02e-09 | 29 |