FFCP PHASE1:Hg19::chr5:68788435..68788460,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=100506658 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8104 | |||
|TSSclassifier=strong | |||
|UniProt=A8K3T2,Q16625 | |||
|association_with_transcript=-129bp_to_NM_001205254_5end | |||
|coexpression_cluster_id=C4514 | |||
|description=CAGE_peak_4_at_OCLN_5end | |||
|id=chr5:68788435..68788460,+ | |||
|ontology_enrichment_celltype=CL:0000223!1.06e-15!59;CL:0000066!1.99e-15!254;CL:0002076!3.57e-13!43;CL:0002251!2.59e-08!21 | |||
|ontology_enrichment_celltype_v019=CL:0002076;5.28e-08;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.64e-11,253;CL:0002076,5.88e-10,42;CL:0000223,1.33e-09,58 | |||
|ontology_enrichment_development_v019=UBERON:0006595;8.21e-08;86 | |||
|ontology_enrichment_disease=DOID:305!9.25e-22!106;DOID:0050687!6.69e-14!143;DOID:299!3.47e-12!25;DOID:1749!5.18e-11!14 | |||
|ontology_enrichment_disease_v019=DOID:299;5.33e-14;25!DOID:1749;1.42e-09;14!DOID:5093;7.76e-08;4!DOID:1612;7.76e-08;4!DOID:305;8.58e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,8.30e-17,106;DOID:299,5.48e-14,25;DOID:0050687,3.51e-11,143;DOID:1749,1.36e-09,14;DOID:5093,9.69e-08,4;DOID:1612,9.69e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0004119!5.97e-19!169;UBERON:0000925!5.97e-19!169;UBERON:0006595!5.97e-19!169;UBERON:0001007!4.42e-18!155;UBERON:0001555!4.42e-18!155;UBERON:0007026!4.42e-18!155;UBERON:0004921!1.39e-17!129;UBERON:0004185!1.39e-17!129;UBERON:0000077!1.95e-14!130;UBERON:0000466!4.13e-13!126;UBERON:0001041!1.15e-11!98;UBERON:0007023!2.21e-11!115;UBERON:0000062!2.86e-11!511;UBERON:0000464!1.30e-10!104;UBERON:0005177!1.05e-09!107;UBERON:0005911!1.09e-09!82;UBERON:0001004!1.25e-08!72;UBERON:0005409!1.47e-07!35;UBERON:0005156!2.16e-07!59;UBERON:0000990!2.16e-07!59;UBERON:0005153!2.24e-07!37;UBERON:0009569!2.72e-07!113;UBERON:0000468!4.30e-07!659;UBERON:0005181!4.43e-07!35;UBERON:0000481!6.36e-07!347;UBERON:0003133!7.15e-07!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;8.37e-15;33!UBERON:0005409;1.57e-13;22!UBERON:0000160;4.18e-11;17!UBERON:0002294;8.81e-10;7!UBERON:0001173;8.81e-10;7!UBERON:0002108;5.66e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004921,2.10e-18,118;UBERON:0001007,3.05e-18,145;UBERON:0001555,3.05e-18,145;UBERON:0007026,3.05e-18,145;UBERON:0004119,3.34e-17,160;UBERON:0000925,3.34e-17,160;UBERON:0006595,3.34e-17,160;UBERON:0005409,3.26e-13,25;UBERON:0000160,4.07e-11,17;UBERON:0001041,7.48e-11,87;UBERON:0005911,9.93e-09,82;UBERON:0005177,7.62e-08,101;UBERON:0002294,2.29e-07,9;UBERON:0001173,2.29e-07,9;UBERON:0004912,2.29e-07,9;UBERON:0009569,3.68e-07,112;UBERON:0002108,5.14e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.9580320813343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.589405839739707,1.45718115317017,2.59549109949101,0.324547393654683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,1.09098448236334,0,1.09776335516636,0.397589304964456,0.580969714347592,0.518305275076852,0.504641701751257,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.33775174109154,1.96565443335525,0.590789906681404,0,13.4057398011994,0,0.439001141634502,2.24803506515239,0.402115889646523,0.462942225792648,0,0,0,0,0,0,0,0,1.58040879591855,7.72637545885385,0,0,0,0,0.335964256397719,0.708875486211932,0.806026704325635,2.03443756959773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.9982099128376,0,19.0607647097305,0,0,0,0.902399225814824,2.92658280996776,0,0,1.26661954671451,0,0,0,0,0,0,2.03901018436031,1.66215201785745,0,0,0,0,0,0,2.36994326789761,0,0.247528499761764,0,0.650060246036521,0,0,0,0,0,0,0,0,0,3.47098322258054,0.192190067365106,0.510450849978337,5.56367794705525,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.25088746543166,0.670302275535787,0,1.97701981631236,0,0,0,0.689170200620878,0,0,0,0,0,0,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,2.50634477090067,0,0,0.201799707191048,0.425846237690326,0,0.307240764308458,0.223676107892416,0.166849141711909,0,0,0,0,0,0,3.55567026775618,0.146508179271894,0.121360521749513,0,0,21.4870036263921,0.890894042497916,15.9723565091601,0,0.140669416410513,0,0,0.211125408127993,0,1.10513566212459,0.755798243562828,0,0,0,5.57183777113426,5.72867758961949,0,0.789147245095469,0,0,0,0.278304294485554,0,3.1251331330228,2.0115799999125,0.724999575434793,0.341380344856499,2.03402920234213,0.945550727071745,0,0,0,0,0.241192877250816,0,0.110579259931225,0,0.219385397153973,0,20.4952904089547,1.61595542857974,0,0.46112780877612,2.06442582142476,2.82483166997221,2.23300811812344,0.457987967009312,0.533034776018635,0,0,0,0,0,0,0,0,0.843992258112108,2.28525931422807,6.07818207165946,0,1.99052386215701,2.12298154808014,4.888241159469,0,0,0,0.269604531922708,0.802577647298789,0.234264445725339,0,1.56531695145672,0.728341138602278,3.15667522279512,6.04953580243319,0.30607276163049,0.126373159256976,0.901940516486955,0.414752765588989,0,0,0,0,0.853828638089378,0,3.12407529003236,4.31166548623262,3.5694274697965,0.698906672968121,0.687944129886466,0,0,0,4.84945082442097,0,0.90392296312213,0,0,0.189932387867636,4.10657903743086,1.20238230377301,5.12287187374446,0.19980960958213,2.16135625731159,0.343609788497747,0.686379991447858,1.29649318189335,0.248505071130865,2.82832841540154,0,0,0,0.288950589901519,0,0,0,0,0,0,0,0,4.3929380109778,0,0,0.0671834724867263,0,0,0.393915911536118,0.247247575143499,0.26961417541674,0.984274815147488,0.169346664131569,0,0.272406812223151,1.12527203925513,0.962776056180637,1.24632101408756,1.799791132412,14.702237136601,0.182248669974074,3.01891218839339,2.67939404817274,2.51782023047991,0.211200673038813,0,5.37362552494447,0,0,0,0,0,0,0,0,0,0,2.63794020620548,2.65013777824443,0,0.13223260174269,0.171086837884329,2.81926008926669,2.88326013932776,6.9169894243853,4.14239055347196,0,0,0,3.19170628885091,0,0,0,0,0.785270481251171,0,0,0,1.14681839138014,0.110929051536852,0.310482014706917,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.428883182749851,0.782982875895635,0.226705925512272,0,0,0,0,0,0,0.771656153083659,0,0,0,0,0.138258436151731,0,0.132864840313363,0.327130788511688,0,0,3.38099397373803,0.19998739585493,0,0,0,0,21.2616851733556,5.59869534029676,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321146125482298,0,0.319267718114302,0.41023272848151,0.252071696221718,0.138314504928436,0.161475645631851,0,0.785181748008205,0.353909170043221,0.917142992608395,3.81234698296116,0,0,0,0.300841313397029,0,3.12605604493237,1.04762677792569,0,3.84425824164318,0.405225507710368,0,0,0.507326481551255,0,0.548257766857182,0.496211178389294,0,2.6830109804315,0,0,0,0.227662191351298,0.443511850813194,0,0,0.339848664884159,0.197318320688547,0.827356886187777,0.889851215136553,0.706437835654626,0,7.5673484094723,0,0,0,0.428859265059938,0,0.23248285073625,0,0,0.207216164163037,1.0243108625637,2.76503864725637,1.29068207646083,0.236664001461131,0.0852134047591577,0.846774100381858,10.7680228215704,0.31020638566432,0,7.04689220326092,2.65005630761156,6.09589624911347,0,0.102662806856247,0,3.39997695141398,0.467878926924211,0,0,0.22589216407792,0,1.66059127923341,7.17719670403885,5.24542945209498,2.82190377816914,0.735444965261716,0.235676547101626,0,0.297046400327086,0,0,0,0,1.79894080664872,1.42843150884526,5.64631794745107,5.61689566824178,7.30336388246517,0,0.143339583151451,0,0,0,5.81929524566941,0,0,0.865253124247578,0.126166424835079,0,0,4.28353084916323,2.6721740526556,1.47031839255752,0.752122617877125,0.0757786982182394,0.803892390468535,0,0.20686599172379,2.98527574661373,1.42838658878244,0.129177819672012,0.186224142887574,0,8.01954194304878,1.21270313374932,5.22520194952707,0.342233301085281,3.90641907484608,2.15166616178029,1.66330178273007,0.407016343054873,0,0,0.0898252021065869,0,0.733448665097199,0.813792356631477,1.99727032255654,0.201273793591026,0 | |||
|short_description=p4@OCLN | |||
}} |
Revision as of 05:47, 22 January 2014
Short description: | p4@OCLN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_OCLN_5end |
Coexpression cluster: | C4514_nasal_immature_Prostate_cervical_amniotic_Intestinal_colon |
Association with transcript: | -129bp_to_NM_001205254_5end |
EntrezGene: | OCLN |
HGNC: | 8104 |
UniProt: | A8K3T2Q16625 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.64e-11 | 253 |
endo-epithelial cell | 5.88e-10 | 42 |
endodermal cell | 1.33e-09 | 58 |
Ontology term | p-value | n |
---|---|---|
subdivision of digestive tract | 2.10e-18 | 118 |
digestive system | 3.05e-18 | 145 |
digestive tract | 3.05e-18 | 145 |
primitive gut | 3.05e-18 | 145 |
endoderm-derived structure | 3.34e-17 | 160 |
endoderm | 3.34e-17 | 160 |
presumptive endoderm | 3.34e-17 | 160 |
gastrointestinal system | 3.26e-13 | 25 |
intestine | 4.07e-11 | 17 |
foregut | 7.48e-11 | 87 |
endo-epithelium | 9.93e-09 | 82 |
trunk region element | 7.62e-08 | 101 |
biliary system | 2.29e-07 | 9 |
biliary tree | 2.29e-07 | 9 |
biliary bud | 2.29e-07 | 9 |
subdivision of trunk | 3.68e-07 | 112 |
small intestine | 5.14e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 8.30e-17 | 106 |
adenocarcinoma | 5.48e-14 | 25 |
cell type cancer | 3.51e-11 | 143 |
squamous cell carcinoma | 1.36e-09 | 14 |
thoracic cancer | 9.69e-08 | 4 |
breast cancer | 9.69e-08 | 4 |