FFCP PHASE1:Hg19::chr5:149535335..149535359,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5159 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8804 | |||
|TSSclassifier=strong | |||
|UniProt=E5RH16,P09619,Q59F04 | |||
|association_with_transcript=62bp_to_ENST00000520579,NM_002609,uc003lro.2,uc003lrp.2,uc010jhd.2_5end | |||
|coexpression_cluster_id=C1528 | |||
|description=CAGE_peak_3_at_PDGFRB_5end | |||
|id=chr5:149535335..149535359,- | |||
|ontology_enrichment_celltype=CL:0000055!7.14e-27!180;CL:0000057!5.25e-24!75;CL:0002620!1.16e-09!23;CL:0000136!5.24e-09!15;CL:0000183!2.36e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000057;1.37e-10;73!CL:0002620;3.50e-10;23!CL:0000136;3.26e-08;13!CL:0002320;1.26e-07;188!CL:0002334;4.25e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.12e-26,76;CL:0002620,3.00e-10,23;CL:0000136,1.51e-09,15;CL:0002334,4.81e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!5.49e-20!365;UBERON:0007023!4.09e-13!115;UBERON:0000914!1.50e-12!83;UBERON:0002329!1.50e-12!83;UBERON:0003077!1.50e-12!83;UBERON:0003059!1.50e-12!83;UBERON:0007282!1.50e-12!83;UBERON:0009618!1.50e-12!83;UBERON:0007285!1.50e-12!83;UBERON:0000481!3.11e-11!347;UBERON:0003102!2.11e-10!95;UBERON:0000033!3.09e-10!123;UBERON:0000153!4.05e-10!129;UBERON:0007811!4.05e-10!129;UBERON:0004290!4.15e-10!70;UBERON:0001013!1.07e-09!14;UBERON:0002199!4.05e-09!45;UBERON:0002416!4.05e-09!45;UBERON:0000468!3.86e-08!659;UBERON:0002385!3.92e-08!63;UBERON:0001015!3.92e-08!63;UBERON:0000383!3.92e-08!63;UBERON:0003075!4.74e-08!86;UBERON:0007284!4.74e-08!86;UBERON:0004121!7.88e-08!169;UBERON:0001134!9.17e-08!61;UBERON:0002036!9.17e-08!61;UBERON:0003082!9.17e-08!61;UBERON:0000924!1.83e-07!173;UBERON:0006601!1.83e-07!173;UBERON:0002346!1.85e-07!90;UBERON:0000486!3.25e-07!82;UBERON:0005256!4.35e-07!143;UBERON:0002097!6.55e-07!40;UBERON:0000479!6.74e-07!787;UBERON:0000955!9.41e-07!69;UBERON:0006238!9.41e-07!69;UBERON:0005743!9.92e-07!86;UBERON:0002616!9.95e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;2.67e-10;14!UBERON:0002384;1.17e-08;198!UBERON:0002199;6.22e-07;46!UBERON:0002416;6.22e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,6.56e-14,132;UBERON:0007023,7.57e-13,114;UBERON:0003102,2.37e-11,99;UBERON:0000479,9.54e-11,773;UBERON:0002199,2.10e-10,46;UBERON:0002416,2.10e-10,46;UBERON:0001013,2.76e-10,14;UBERON:0007524,1.13e-08,73;UBERON:0003077,3.22e-08,72;UBERON:0007285,3.22e-08,72;UBERON:0002329,4.82e-08,71;UBERON:0003059,4.82e-08,71;UBERON:0007282,4.82e-08,71;UBERON:0004290,4.82e-08,71;UBERON:0009618,4.82e-08,71;UBERON:0002097,5.59e-08,41;UBERON:0004121,1.30e-07,171;UBERON:0000924,1.30e-07,171;UBERON:0006601,1.30e-07,171;UBERON:0003075,1.35e-07,82;UBERON:0007284,1.35e-07,82;UBERON:0003104,2.72e-07,160;UBERON:0009142,2.72e-07,160;UBERON:0007503,5.07e-07,78;UBERON:0002346,8.05e-07,86 | |||
|phase1_expression=37.2440677504641,32.1150785836475,47.9244973926302,42.0307853083148,59.8927866532566,15.7020934338066,17.7309914717817,51.8010296210001,69.9977483575567,0.245733936501509,0,0.218441372130172,0,8.53987835424322,17.5640609135795,1.34465029290355,3.01347264011988,0.730310090387373,1.95173119516203,4.55547914884115,13.2600449308764,1.88072832886853,3.14859585844162,1.23186982565596,5.64941878176613,0,0,0,0,0.383829398097213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,78.0181972204677,7.37770945674,5.88167784480239,3.97583067623023,23.5628817998868,10.718642403101,14.3151470469198,8.75942766544745,3.78139268656271,5.32150553910154,5.09441757020131,7.26933869012305,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366403487860815,0,0,0,33.7940927152817,4.43206790826029,1.58891016975863,39.5834536633363,9.930714701554,4.48542080113846,2.1349799145941,1.97334038733728,19.2950841947855,6.46611225934503,2.45192854670188,35.417638068914,38.6037869401599,18.7457145467037,13.1107232268735,3.4228309292667,13.7492786107657,4.3450764498193,4.37056949793955,2.94946694074722,15.5157170153719,6.38738450021193,30.4811054468508,36.8280885757437,39.5627086845691,18.2032272387605,25.8702531053846,7.57512512793298,9.25877047052535,8.31192346452549,23.2658139066844,24.8255114597206,38.9116572568086,1.13432183160021,12.5572744982203,19.0066076048525,21.8289858194349,32.7099294731998,16.4884046781502,19.5806810434678,23.2646070414487,14.6835409049902,10.815507572893,15.398460228891,25.4978219239169,30.2278126251178,35.1459496591448,7.55640736707302,9.49539316938731,0,0,0,0.121973706129595,0.265059536642971,0.464775771478074,0.725627385107593,0.252320850875628,0,20.3384392028761,33.44852878603,19.3388889893473,30.1839153220786,41.869009936836,0,0,0,0,0,0,0,0,0,0,7.01208869017229,33.7490689291748,38.2222649602409,0,0,0.590789906681404,0,0,2.23038153388083,0,0,0.100528972411631,0,10.7516740752407,9.35941306751621,2.88662684050547,1.62302566965108,9.27528684462991,0,0,0,0,0,0,0,0,0,0.335964256397719,0,0,0,0,0,0,1.03664057770386,0.432359860250884,0.37872730027914,0.761974731506028,0,0,10.2643467613623,0.616964956219941,0,0,8.63409349459278,9.59112151433216,3.88692914851035,5.42941206182667,185.981351842979,15.215449546008,31.3806977570147,18.7213386440459,10.80270971901,8.5109479213967,3.99633268524149,21.303721055064,22.2474858210492,8.23240336780769,18.2412263204492,26.6543961556909,3.95975936466715,0.301439377059586,0,0.399891964728228,0,0,0,12.9397421965455,36.7558194669164,0,1.88215698667853,0.410952645100767,0.537182889719687,0,0,0,0,1.01637849688985,1.30139853857622,0,0.335032530668698,0,0,0,0,15.827202431769,23.0078439687451,13.291986161287,29.9478040604362,18.1997568573105,20.8167187844794,26.0053941283823,28.890825573861,38.6592756895174,33.1113828136016,10.627609576567,11.0621501125022,12.9456585557443,90.8517370627116,63.8246768288192,0,0,0,0,1.66435439510497,1.81434175997808,22.5778105115087,35.1427918829663,32.8372310486696,29.3438651795555,36.8429219328026,27.8277283578441,22.2627099667486,11.2573076475939,19.8869132350702,6.3237910130633,1.03850885836724,5.92672930145792,0,0,0,2.75554675595056,4.00600569614778,11.5389485164293,0,0,2.35304930753057,0,0,0,0,1.94324324491925,0,2.43851793789468,2.50844886927427,0,0,0,0,0,4.61610225209501,10.8244833080903,2.60302715731442,5.15205058238611,0,0,1.14853107599234,1.30012049207304,3.21367859688319,5.7035723792352,9.39696564399331,11.5127756044597,8.82154063900996,12.9978496290611,13.4865525340233,7.32948995778468,11.0399724201954,0,0,0,0,0.464845549297286,4.7221852024596,0.6970372701606,0.308033580176089,1.06461206063404,0,0.74129687641568,0.429374660225974,20.8408686841414,15.1862123864988,22.3037326890875,15.8656630613027,46.2174107076634,8.59148769400029,2.35484592059769,10.6124749974156,8.23611089208164,9.89624179703766,1.01091240786658,1.58510321173008,0.421258456238981,20.9682507808524,0.487426979262569,0,12.5579918495347,6.50464986987079,10.1707304958219,1.65409603063837,0,0.438450885253763,9.260408548267,18.3650530573057,0,1.239293992399,4.50712964051586,3.58528380510129,6.77918382990536,0,13.8356814987533,20.6885482591711,24.0385271860728,17.0762928194572,38.1428845067031,0,0,0,7.06078505825844,0,0,0,0,0,0,0,0,0,0,0,0,1.92283328029452,8.66231869737023,0,0,0,0,0,0,0,0,0,0,1.14117339516596,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27.690045882388,0,0.222886768554957,0,0,0,0,0.994147647766298,5.90811548924153,0,0,0,34.0714059909329,1.93398740871803,0,0.306806047506464,0,7.77598969154519,0,0,0,13.415503166623,0,27.7842475361592,3.87733098438087,3.33965153382665,0,0,0,44.2249741015224,0,0,0,0,0,0.694499979733169,4.42870692906919,2.77371808838438,0,2.76448149828062,3.84211904639612,3.72955175161753,0,0,38.3981789933947,0,0,0,0,1.5950057986596,10.4421256478123,0,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| |||
|short_description=p3@PDGFRB | |||
}} |
Revision as of 08:16, 22 January 2014
Short description: | p3@PDGFRB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PDGFRB_5end |
Coexpression cluster: | C1528_Mesenchymal_Pericytes_mesodermal_Adipocyte_Fibroblast_Multipotent_Hair |
Association with transcript: | 62bp_to_ENST00000520579, NM_002609, uc003lro.2, uc003lrp.2, uc010jhd.2_5end |
EntrezGene: | PDGFRB |
HGNC: | 8804 |
UniProt: | E5RH16P09619Q59F04 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.12e-26 | 76 |
skin fibroblast | 3.00e-10 | 23 |
fat cell | 1.51e-09 | 15 |
preadipocyte | 4.81e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 6.56e-14 | 132 |
adult organism | 7.57e-13 | 114 |
surface structure | 2.37e-11 | 99 |
tissue | 9.54e-11 | 773 |
integument | 2.10e-10 | 46 |
integumental system | 2.10e-10 | 46 |
adipose tissue | 2.76e-10 | 14 |
dense mesenchyme tissue | 1.13e-08 | 73 |
paraxial mesoderm | 3.22e-08 | 72 |
presumptive paraxial mesoderm | 3.22e-08 | 72 |
somite | 4.82e-08 | 71 |
presomitic mesoderm | 4.82e-08 | 71 |
presumptive segmental plate | 4.82e-08 | 71 |
dermomyotome | 4.82e-08 | 71 |
trunk paraxial mesoderm | 4.82e-08 | 71 |
skin of body | 5.59e-08 | 41 |
ectoderm-derived structure | 1.30e-07 | 171 |
ectoderm | 1.30e-07 | 171 |
presumptive ectoderm | 1.30e-07 | 171 |
neural plate | 1.35e-07 | 82 |
presumptive neural plate | 1.35e-07 | 82 |
mesenchyme | 2.72e-07 | 160 |
entire embryonic mesenchyme | 2.72e-07 | 160 |
epithelial vesicle | 5.07e-07 | 78 |
neurectoderm | 8.05e-07 | 86 |