FFCP PHASE1:Hg19::chr5:176558787..176558804,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_at_chr5:176558787..176558804,+ | |||
|id=chr5:176558787..176558804,+ | |||
|ontology_enrichment_celltype=CL:0002322!1.81e-10!5;CL:0000188!6.96e-09!9 | |||
|ontology_enrichment_celltype_v019=CL:0002322;1.78e-43;5!CL:0000039;6.72e-21;7!CL:0000586;6.72e-21;7!CL:0002535;2.13e-18;2!CL:0002321;1.80e-14;15!CL:0000540;9.91e-14;6!CL:0000404;9.91e-14;6!CL:0000148;2.09e-08;10!CL:0002552;1.13e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.71e-43,5;CL:0000039,6.55e-21,7;CL:0000586,6.55e-21,7;CL:0002535,1.87e-18,2;CL:0000540,9.91e-14,6;CL:0000031,9.91e-14,6;CL:0000404,9.91e-14,6;CL:0000047,1.96e-10,8;CL:0000148,2.01e-08,10;CL:0000541,2.01e-08,10;CL:0002552,1.17e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.06e-14;10!UBERON:0005564;1.06e-14;10!CL:0000031;9.91e-14;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4362;6.65e-08;5!DOID:3095;9.38e-07;22!DOID:2994;9.38e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:4362,6.31e-08,5;DOID:3095,9.31e-07,22;DOID:2994,9.31e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0003075!2.36e-13!86;UBERON:0007284!2.36e-13!86;UBERON:0002346!2.39e-12!90;UBERON:0004121!4.59e-12!169;UBERON:0000924!1.75e-11!173;UBERON:0006601!1.75e-11!173;UBERON:0001049!4.21e-11!57;UBERON:0005068!4.21e-11!57;UBERON:0006241!4.21e-11!57;UBERON:0007135!4.21e-11!57;UBERON:0003056!4.47e-11!61;UBERON:0005743!1.51e-10!86;UBERON:0000033!2.58e-10!123;UBERON:0000153!5.03e-10!129;UBERON:0007811!5.03e-10!129;UBERON:0007023!8.31e-10!115;UBERON:0001017!1.18e-09!82;UBERON:0002616!1.83e-09!59;UBERON:0003080!2.82e-09!42;UBERON:0000200!7.91e-09!6;UBERON:0000073!8.38e-09!94;UBERON:0001016!8.38e-09!94;UBERON:0000473!1.78e-08!8;UBERON:0002780!2.24e-08!41;UBERON:0001890!2.24e-08!41;UBERON:0006240!2.24e-08!41;UBERON:0003135!1.27e-07!11;UBERON:0000064!2.72e-07!219;UBERON:0000955!4.53e-07!69;UBERON:0006238!4.53e-07!69;UBERON:0002298!6.45e-07!8;UBERON:0000475!8.67e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0006955;2.13e-18;2!UBERON:0004801;2.13e-18;2!UBERON:0000473;2.55e-18;8!UBERON:0003135;2.21e-13;11!UBERON:0000922;1.13e-08;49!UBERON:0000991;4.51e-07;21!UBERON:0003101;9.38e-07;22!UBERON:0000079;9.38e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006955,1.87e-18,2;UBERON:0004801,1.87e-18,2;UBERON:0000473,2.50e-18,8;UBERON:0003135,2.18e-13,11;UBERON:0000991,4.48e-07,21;UBERON:0009196,4.48e-07,21;UBERON:0009117,4.48e-07,21;UBERON:0005564,4.48e-07,21;UBERON:0004176,9.31e-07,22;UBERON:0003101,9.31e-07,22;UBERON:0000079,9.31e-07,22;UBERON:0000002,9.69e-07,6;UBERON:0001560,9.69e-07,6 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0.245733936501509,0,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0,0.204000691244253,0,0,0.410623275218653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0.0945348171640679,0,0.175669571386252,0.589405839739707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357198913136319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0.647491777472526,0.140450806702248,0,1.10550885580591,0.413303124703062,1.18800285728205,0,0,0,0.673344455816265,0.625592599359821,0.831192346452549,0,0.30648779579902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.39105342066543,7.1566074893602,4.99633954338929,2.798848485415,5.80337957013945,9.48941133597158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0.325808305310325,1.03993478527958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448524337381443,0,0.2933531432838,0,0,0,0,0,0,0,0.799266537048298,0,0,0,0.65147236858747,0,1.58390374586686,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0.0868836144680828,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0.771048469013278,0,1.47828880824856,0,0.232420756919918,0,0,0,0.114814448164607,0,0,0,0.15403067420883,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0.447749509444357,0,0,0.512900250232778,0,0,0,0,0,0,0,0,0.096670718292122,0.462145851343933,0.614014698904518,1.10269257987624,0.859361958946189,0.290033387828457,0.596586391912706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42793898803392,0,0,0.719489830333259,0,0.353437207037059,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0.573645408816206,0,0,0,0,0,0,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,2.27308917445131,0.47748896947538,0,0.307160702099232,0,0.140669416410513,0,0,0,0,0,1.25966373927138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,0.234264445725339,0,0,0,0,0,0,0.063186579628488,0,0.103688191397247,0,0,0,0,0,0,0,0,9.57651272384428,0.17472666824203,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0.126621591911757,5.67099009930929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0,0,0,3.53656926623042,3.98864366131978,8.3088067605837,0,0,0.0607495566580247,0,0.157611414598396,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0,0,0,0,0,0,0,0,0,0,0,0.5013797880454,0,0.983617892129413,0,0.886068179966986,0.122026264901963,0.1251909307065,0,0.110929051536852,0.434674820589684,0,0,0,0,0,0,0,0.447764408660622,0.233713309847224,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0.422624246717254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0.138314504928436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0,0,0,0,0,0,0,0,0,0.606965604236632,0,0,0,0,0.203909198930495,0.0657727735628491,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0,0,0,0,0.193373663920732,0,0,0,0,0,0,0.286679166302903,0,0,0,0,0,0,0,0,0.437062287854782,0,7.44518457116467,11.7575658316847,15.2545533227843,13.0367920432035,0.227336094654718,0.535928260312357,0.829169439458779,0.20686599172379,0,0,0,0.124149428591716,0,0,0,0.217716747896961,0,0,0.143444410785353,0,0,0,0,0,0,0.244482888365733,0,0,0,0 | |||
|short_description=p@chr5:176558787..176558804,+ | |||
}} |
Revision as of 09:17, 22 January 2014
Short description: | p@chr5:176558787..176558804, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:176558787..176558804, + |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.71e-43 | 5 |
germ line cell | 6.55e-21 | 7 |
germ cell | 6.55e-21 | 7 |
epithelial cell of cervix | 1.87e-18 | 2 |
neuron | 9.91e-14 | 6 |
neuroblast | 9.91e-14 | 6 |
electrically signaling cell | 9.91e-14 | 6 |
neuronal stem cell | 1.96e-10 | 8 |
melanocyte | 2.01e-08 | 10 |
melanoblast | 2.01e-08 | 10 |
fibroblast of gingiva | 1.17e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
uterine epithelium | 1.87e-18 | 2 |
cervix epithelium | 1.87e-18 | 2 |
testis | 2.50e-18 | 8 |
male reproductive organ | 2.18e-13 | 11 |
gonad | 4.48e-07 | 21 |
indifferent external genitalia | 4.48e-07 | 21 |
indifferent gonad | 4.48e-07 | 21 |
gonad primordium | 4.48e-07 | 21 |
external genitalia | 9.31e-07 | 22 |
male organism | 9.31e-07 | 22 |
male reproductive system | 9.31e-07 | 22 |
uterine cervix | 9.69e-07 | 6 |
neck of organ | 9.69e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
cervical cancer | 6.31e-08 | 5 |
germ cell and embryonal cancer | 9.31e-07 | 22 |
germ cell cancer | 9.31e-07 | 22 |