FFCP PHASE1:Hg19::chr6:33749053..33749070,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=221496 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21244 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=253bp_to_ENST00000513832_5end | |||
|coexpression_cluster_id=C139 | |||
|description=CAGE_peak_2_at_LEMD2_5end | |||
|id=chr6:33749053..33749070,- | |||
|ontology_enrichment_celltype=CL:0005020!2.84e-16!6;CL:0002138!2.84e-16!6;CL:0005022!2.84e-16!6;CL:0002139!5.47e-15!24;CL:0000243!3.62e-11!15;CL:0000125!3.62e-11!15;CL:0000030!3.62e-11!15;CL:0000339!3.62e-11!15;CL:0000115!4.45e-11!35;CL:0000128!8.31e-10!7;CL:0000126!8.31e-10!7;CL:0000127!8.31e-10!7;CL:0002453!8.31e-10!7;CL:0000095!8.57e-10!17;CL:0000123!8.57e-10!17;CL:0000064!2.99e-09!3;CL:0005012!2.99e-09!3;CL:0000067!2.99e-09!3;CL:0002304!2.99e-09!3;CL:0000066!2.90e-08!254;CL:0002078!3.90e-08!44;CL:0002319!9.10e-08!25;CL:0002618!1.51e-07!3;CL:0000213!1.57e-07!57;CL:0000215!1.57e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0000128;5.31e-27;7!CL:0000126;5.31e-27;7!CL:0000127;5.31e-27;7!CL:0002138;3.84e-18;6!CL:0000243;3.84e-17;15!CL:0000125;3.84e-17;15!CL:0000064;1.04e-16;3!CL:0000067;1.04e-16;3!CL:0005012;1.04e-16;3!CL:0002304;1.04e-16;3!CL:0002603;2.03e-16;3!CL:0000095;2.45e-15;17!CL:0000342;6.05e-13;1!CL:0002565;6.05e-13;1!CL:0002319;8.85e-11;25!CL:0002188;1.30e-10;5!CL:1000746;7.94e-08;7!CL:1000612;7.94e-08;7!CL:0000115;2.36e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0000128,7.96e-27,7;CL:0000126,7.96e-27,7;CL:0000127,7.96e-27,7;CL:0002453,7.96e-27,7;CL:0005020,3.13e-18,6;CL:0002138,3.13e-18,6;CL:0005022,3.13e-18,6;CL:0000243,3.98e-17,15;CL:0000125,3.98e-17,15;CL:0000030,3.98e-17,15;CL:0000339,3.98e-17,15;CL:0000064,1.37e-16,3;CL:0000067,1.37e-16,3;CL:0005012,1.37e-16,3;CL:0002304,1.37e-16,3;CL:0002603,2.78e-16,3;CL:0000095,2.53e-15,17;CL:0000123,2.53e-15,17;CL:0000342,8.64e-13,1;CL:0002565,8.64e-13,1;CL:0000133,2.07e-11,59;CL:0002319,9.05e-11,25;CL:0002188,1.33e-10,5;CL:0000333,1.93e-09,41;CL:0000221,2.96e-09,72;CL:0000115,3.56e-08,36;CL:1000746,8.08e-08,7;CL:1000612,8.08e-08,7 | |||
|ontology_enrichment_development_v019=CL:0005022;3.84e-18;6!CL:0000339;3.84e-17;15!CL:0000133;5.21e-07;59 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001473!5.48e-12!8;UBERON:0004536!5.48e-12!8;UBERON:0006558!5.48e-12!8;UBERON:0000488!9.57e-12!4;UBERON:0002049!7.10e-10!79;UBERON:0007798!7.10e-10!79;UBERON:0002465!2.04e-09!10;UBERON:0001778!2.99e-09!3;UBERON:0001775!2.99e-09!3;UBERON:0007625!8.34e-09!11;UBERON:0002203!8.65e-08!6;UBERON:0001768!8.65e-08!6;UBERON:0000055!2.91e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0000488;6.14e-27;4!UBERON:0007625;1.47e-26;11!UBERON:0002203;3.41e-18;6!UBERON:0001768;3.41e-18;6!UBERON:0002200;3.41e-18;6!UBERON:0001778;1.04e-16;3!UBERON:0001775;1.04e-16;3!UBERON:0000019;2.17e-15;19!UBERON:0000047;2.17e-15;19!UBERON:0004088;2.17e-15;19!UBERON:0010230;2.17e-15;19!UBERON:0000970;1.28e-14;20!UBERON:0002104;6.38e-14;21!UBERON:0001456;6.38e-14;21!UBERON:0001473;9.13e-14;8!UBERON:0004536;9.13e-14;8!UBERON:0006558;9.13e-14;8!UBERON:0001801;1.01e-13;14!UBERON:0002506;6.05e-13;1!UBERON:0001769;6.05e-13;1!UBERON:0010371;6.50e-13;31!UBERON:0000020;1.04e-12;23!UBERON:0001032;3.55e-12;24!UBERON:0004456;3.55e-12;24!UBERON:0002465;3.95e-11;10!UBERON:0006876;3.39e-10;11!UBERON:0002037;1.12e-08;6!UBERON:0000074;7.94e-08;7!UBERON:0001229;7.94e-08;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000488,1.09e-26,4;UBERON:0007625,1.72e-26,11;UBERON:0002203,5.00e-18,6;UBERON:0001768,5.00e-18,6;UBERON:0002200,5.00e-18,6;UBERON:0001778,1.37e-16,3;UBERON:0001775,1.37e-16,3;UBERON:0000019,1.40e-14,20;UBERON:0000047,1.40e-14,20;UBERON:0010312,1.40e-14,20;UBERON:0004088,1.40e-14,20;UBERON:0010230,1.40e-14,20;UBERON:0003072,1.40e-14,20;UBERON:0004128,1.40e-14,20;UBERON:0003071,1.40e-14,20;UBERON:0000970,6.93e-14,21;UBERON:0002104,6.93e-14,21;UBERON:0001473,7.84e-14,8;UBERON:0004536,7.84e-14,8;UBERON:0006558,7.84e-14,8;UBERON:0001801,1.27e-13,14;UBERON:0001456,2.98e-13,22;UBERON:0005085,3.01e-13,31;UBERON:0002506,8.64e-13,1;UBERON:0001769,8.64e-13,1;UBERON:0000020,3.82e-12,24;UBERON:0001032,3.82e-12,24;UBERON:0004456,3.82e-12,24;UBERON:0002465,3.50e-11,10;UBERON:0006876,4.16e-10,11;UBERON:0002037,1.31e-08,6;UBERON:0006215,1.31e-08,6;UBERON:0003075,4.18e-08,82;UBERON:0007284,4.18e-08,82;UBERON:0010371,6.86e-08,104;UBERON:0010532,8.08e-08,7;UBERON:0000074,8.08e-08,7;UBERON:0001229,8.08e-08,7;UBERON:0001230,8.08e-08,7;UBERON:0003220,8.08e-08,7;UBERON:0005749,8.08e-08,7;UBERON:0004199,8.08e-08,7;UBERON:0004209,8.08e-08,7;UBERON:0004198,8.08e-08,7;UBERON:0002346,1.08e-07,86;UBERON:0005103,6.06e-07,8;UBERON:0000083,6.06e-07,8;UBERON:0009201,6.06e-07,8;UBERON:0006553,6.06e-07,8;UBERON:0003074,6.06e-07,8;UBERON:0003060,6.06e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35433163884467,1.02000345622126,0,0,1.23186982565596,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.40325341790644,1.10864698731282,0.966182642624386,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0.347140501607594,0,0,0,0,0.775250277507987,2.84613010149368,1.33888245105868,0.402829317109147,0,0,0,0,0.17859945656816,0.22452937262617,0.112611480483322,0,0,0.183201743930407,0,0,0,0,0,0.132409180813219,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56449532329816,0,0,0,0,0,0,0,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,1.20097467208968,0,0,0,0,0,0,0,2.55046890945169,0,1.58803092537181,0.462985512576611,0.570762456703795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0.845302752556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.54933536283586,3.40187410553031,0,0,0,0,0,0,0,0,0,0,0,1.62689197332152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.74129687641568,0.572499546967965,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0.962479855263359,0,0,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568272293612826,0,0,0.307160702099232,0,0,0,0,0,0,0,0,153.607561118237,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.489698424477443,0,0,0,0,0,0,0,0,0,0,0,0,0.978323094660449,0,0,0,0,0,0,0,0,0.330991955875499,0.313932918407225,0,0.284609546029793,0,0.347119476670262,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0,0,0,0,0,0,0,0,0,0,0.543616824294456,0.209205692624666,1.63197148218115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885847333632739,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0.628216385000937,0,0,0,0,0,0,0,0.249960815924213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,0.245772908753719,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785181748008205,0,0,0,0,0.690359926060101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336283722218824,0,0.455324382702595,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4582137370881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470317296361523,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0.883164973845552,0.874124575709564,0,1.32585478664576,0.534434810531121,0.275684698604535,0,0,0,0,0,0,0,0,0.0620747142958579,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@LEMD2 | |||
}} |
Revision as of 11:28, 22 January 2014
Short description: | p2@LEMD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LEMD2_5end |
Coexpression cluster: | C139_astrocytoma_skin_salivary_gall_serous_Mallassezderived_renal |
Association with transcript: | 253bp_to_ENST00000513832_5end |
EntrezGene: | LEMD2 |
HGNC: | 21244 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte | 7.96e-27 | 7 |
macroglial cell | 7.96e-27 | 7 |
astrocyte | 7.96e-27 | 7 |
oligodendrocyte precursor cell | 7.96e-27 | 7 |
lymphangioblast | 3.13e-18 | 6 |
endothelial cell of lymphatic vessel | 3.13e-18 | 6 |
vascular lymphangioblast | 3.13e-18 | 6 |
glial cell (sensu Vertebrata) | 3.98e-17 | 15 |
glial cell | 3.98e-17 | 15 |
glioblast | 3.98e-17 | 15 |
glioblast (sensu Vertebrata) | 3.98e-17 | 15 |
ciliated cell | 1.37e-16 | 3 |
ciliated epithelial cell | 1.37e-16 | 3 |
multi-ciliated epithelial cell | 1.37e-16 | 3 |
non-pigmented ciliary epithelial cell | 1.37e-16 | 3 |
astrocyte of the cerebellum | 2.78e-16 | 3 |
neuron associated cell | 2.53e-15 | 17 |
neuron associated cell (sensu Vertebrata) | 2.53e-15 | 17 |
pigment cell (sensu Vertebrata) | 8.64e-13 | 1 |
iris pigment epithelial cell | 8.64e-13 | 1 |
neurectodermal cell | 2.07e-11 | 59 |
neural cell | 9.05e-11 | 25 |
glomerular endothelial cell | 1.33e-10 | 5 |
migratory neural crest cell | 1.93e-09 | 41 |
ectodermal cell | 2.96e-09 | 72 |
endothelial cell | 3.56e-08 | 36 |
glomerular cell | 8.08e-08 | 7 |
kidney corpuscule cell | 8.08e-08 | 7 |