FFCP PHASE1:Hg19::chr7:27179814..27179840,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3200 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5104 | |||
|TSSclassifier=strong | |||
|UniProt=E5RGW8,E5RIJ8 | |||
|association_with_transcript=0bp_to_ENST00000521779,ENST00000522788_5end | |||
|description=CAGE_peak_4_at_HOXA3_5end | |||
|id=chr7:27179814..27179840,- | |||
|ontology_enrichment_celltype=CL:1000507!3.36e-07!12;CL:1000494!3.36e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:1000507;9.03e-13;10!CL:1000494;9.03e-13;10!CL:0000650;1.67e-11;2!CL:1000500;1.67e-11;2!CL:1000618;1.67e-11;2!CL:1001318;1.67e-11;2!CL:0002173;1.67e-11;2!CL:0000062;2.93e-09;9!CL:1000449;1.98e-08;15!CL:1000497;2.09e-07;17!CL:0002518;2.09e-07;17!CL:0002681;3.98e-07;12!CL:0002584;3.98e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,9.39e-13,10;CL:1000494,9.39e-13,10;CL:0000650,1.42e-11,2;CL:1000500,1.42e-11,2;CL:1000618,1.42e-11,2;CL:1001318,1.42e-11,2;CL:0002173,1.42e-11,2;CL:1000449,2.03e-08,15;CL:0000062,1.23e-07,11;CL:0000375,1.23e-07,11;CL:0000335,1.23e-07,11;CL:1000497,2.13e-07,17;CL:0002518,2.13e-07,17;CL:0002681,3.86e-07,12;CL:0002584,3.86e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000335;1.36e-07;11!UBERON:0001045;9.66e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000059!5.69e-11!11;UBERON:0000489!5.75e-11!32;UBERON:0001155!1.90e-10!9;UBERON:0006554!3.57e-10!44;UBERON:0001008!7.75e-10!45;UBERON:0002113!4.63e-09!27;UBERON:0003918!4.63e-09!27;UBERON:0005095!4.63e-09!27;UBERON:0007687!4.63e-09!27;UBERON:0000160!1.34e-07!27;UBERON:0004876!1.78e-07!20;UBERON:0005409!1.79e-07!35;UBERON:0006555!2.03e-07!17;UBERON:0005103!2.03e-07!17;UBERON:0000083!2.03e-07!17;UBERON:0009201!2.03e-07!17;UBERON:0004819!2.03e-07!17;UBERON:0006553!2.03e-07!17;UBERON:0003074!2.03e-07!17;UBERON:0003060!2.03e-07!17;UBERON:0003064!2.29e-07!37;UBERON:0009773!3.36e-07!12;UBERON:0001231!3.36e-07!12;UBERON:0004810!3.36e-07!12;UBERON:0000080!6.67e-07!18;UBERON:0002120!6.67e-07!18;UBERON:0004875!6.67e-07!18;UBERON:0005721!6.67e-07!18;UBERON:0005754!6.67e-07!18;UBERON:0007297!6.67e-07!18 | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;1.13e-17;17!UBERON:0000059;4.06e-17;11!UBERON:0005409;5.17e-17;22!UBERON:0001155;1.02e-14;9!UBERON:0002113;8.40e-13;24!UBERON:0011143;8.40e-13;24!UBERON:0004211;9.03e-13;10!UBERON:0009773;9.03e-13;10!UBERON:0001231;9.03e-13;10!UBERON:0004810;9.03e-13;10!UBERON:0003567;1.67e-11;2!UBERON:0003838;1.67e-11;2!UBERON:0003586;1.67e-11;2!UBERON:0005169;1.67e-11;2!UBERON:0002321;1.67e-11;2!UBERON:0005215;1.67e-11;2!UBERON:0002303;1.67e-11;2!UBERON:0002319;1.67e-11;2!UBERON:0000489;2.21e-10;29!UBERON:0004907;3.93e-10;5!UBERON:0006554;5.40e-10;30!UBERON:0001008;5.40e-10;30!UBERON:0004921;1.14e-09;33!UBERON:0006555;1.98e-08;15!UBERON:0004819;1.98e-08;15!UBERON:0001285;1.98e-08;15!UBERON:0007684;1.98e-08;15!UBERON:0001225;3.98e-07;12!UBERON:0008987;3.98e-07;12!UBERON:0001474;7.54e-07;18!UBERON:0001154;9.66e-07;1!UBERON:0001153;9.66e-07;1!UBERON:0009854;9.66e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.27e-17,17;UBERON:0000059,4.13e-17,11;UBERON:0005409,7.51e-15,25;UBERON:0001155,1.04e-14,9;UBERON:0004810,9.39e-13,10;UBERON:0002113,1.08e-11,26;UBERON:0003918,1.08e-11,26;UBERON:0011143,1.08e-11,26;UBERON:0005095,1.08e-11,26;UBERON:0007687,1.08e-11,26;UBERON:0003567,1.42e-11,2;UBERON:0003838,1.42e-11,2;UBERON:0003586,1.42e-11,2;UBERON:0005169,1.42e-11,2;UBERON:0002321,1.42e-11,2;UBERON:0005215,1.42e-11,2;UBERON:0002303,1.42e-11,2;UBERON:0002319,1.42e-11,2;UBERON:0004907,4.00e-10,5;UBERON:0000489,1.32e-09,31;UBERON:0004211,2.03e-08,15;UBERON:0009773,2.03e-08,15;UBERON:0001231,2.03e-08,15;UBERON:0001285,2.03e-08,15;UBERON:0007684,2.03e-08,15;UBERON:0004208,2.03e-08,15;UBERON:0006555,7.07e-08,16;UBERON:0004819,7.07e-08,16;UBERON:0001225,3.86e-07,12;UBERON:0008987,3.86e-07,12;UBERON:0001154,9.15e-07,1;UBERON:0001153,9.15e-07,1;UBERON:0001045,9.15e-07,1 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,1.96587149201207,0,0,0,0.495065411840187,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0.368965315629341,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0.179117045405697,0,0,0,0,0,0,0,0,0.381988425558278,0,0,0,0,0.285826432630578,0,0,0,0,0,0,0,0,0.771622122786426,1.41849132023278,1.0656887160644,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,1.03473071292505,0,0.553107505625109,0,0.195801157462741,0.343143423810856,0,0,0,0,0,0,0.248107807818777,0.153461973288062,0,0,0,0.160853921143607,0,0.154209693802656,0,0.0821271560138091,0,0,0.966875596732978,0,0.0920809889358963,0,0,0,1.35359883872224,0.231046011313244,0,0,1.26661954671451,0,0,0.215915916102139,0,2.70946437543853,2.50844886927427,0.254876273045038,0,4.02974558499921,0,0,0,0,0,0.103041011647722,2.83865340936865,1.73269949833235,0,0,0,0.580024309752732,0.308097234229289,0.15350367472613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0.471249609382746,0,0,0,0,0,2.11300293513511,0,0.141405431953713,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37402137902306,0,0,0,0.586164286206121,0,0,0,0,0,0.935702702041099,0,0,0,0,0,0,0,0,0,0,0,0,0,3.86797481743607,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.44849212238722,0,1.29833183845255,6.96683351754953,3.80367527364358,5.49927130440263,0,0,0,0.067401132980677,0,0,0,0,0,1.97292201424695,0,0,0,3.00646838828985,17.1085515805458,0,0,0,0,0,0,0.520679215005393,0,0,0.17472666824203,1.71986032471617,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,1.71804894248874,0,0,0,2.35694034616795,0,0,0,4.04530825862126,0,0,0,0,0,0,0,0,0,0,0,0,0,33.7838253629616,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,0,0.157611414598396,2.41291105420991,0,0,0,0,0,0,0,0,0,0,0,2.55582032678133,2.37955392192264,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.1077888102476,0,0,0,0,0.895528817321244,0.233713309847224,0.554805861502613,0,0,0,0,0,0.15543720058278,0,0,0,0.155262956876259,0.414706207840855,0,0,0,0.380805212168795,0,0,0.214821114084977,0,0,0,0,0.673498977531838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247871528518004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.78482710962785,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,1.23109871051734,0,0,0,0,0,0,0,0,0,0,0,0,0.863424021355654,0,14.0136081656895,0,0,0,0,0,1.27865567904938,0,0,0,0,0,0,0.236664001461131,0.511280428554946,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0.356760272332706,7.22854925049344,0,0,0.231522474323834,2.62271472604749,0.940634592723046,0.245148321753905,0,0.196308467114945,0,0.4226557275834,0,0,0,0,0,0,0,0.730336388246517,0,0,1.89325874631822,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244482888365733,0.813792356631477,0,0,0 | |||
|short_description=p4@HOXA3 | |||
}} |
Revision as of 16:12, 22 January 2014
Short description: | p4@HOXA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_HOXA3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000521779, ENST00000522788_5end |
EntrezGene: | HOXA3 |
HGNC: | 5104 |
UniProt: | E5RGW8E5RIJ8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 9.39e-13 | 10 |
nephron tubule epithelial cell | 9.39e-13 | 10 |
mesangial cell | 1.42e-11 | 2 |
kidney interstitial cell | 1.42e-11 | 2 |
juxtaglomerular complex cell | 1.42e-11 | 2 |
renal interstitial pericyte | 1.42e-11 | 2 |
extraglomerular mesangial cell | 1.42e-11 | 2 |
epithelial cell of nephron | 2.03e-08 | 15 |
osteoblast | 1.23e-07 | 11 |
osteoprogenitor cell | 1.23e-07 | 11 |
mesenchyme condensation cell | 1.23e-07 | 11 |
kidney cell | 2.13e-07 | 17 |
kidney epithelial cell | 2.13e-07 | 17 |
kidney cortical cell | 3.86e-07 | 12 |
renal cortical epithelial cell | 3.86e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.27e-17 | 17 |
large intestine | 4.13e-17 | 11 |
gastrointestinal system | 7.51e-15 | 25 |
colon | 1.04e-14 | 9 |
nephron tubule epithelium | 9.39e-13 | 10 |
kidney | 1.08e-11 | 26 |
kidney mesenchyme | 1.08e-11 | 26 |
upper urinary tract | 1.08e-11 | 26 |
kidney rudiment | 1.08e-11 | 26 |
kidney field | 1.08e-11 | 26 |
abdomen connective tissue | 1.42e-11 | 2 |
abdominal segment connective tissue | 1.42e-11 | 2 |
trunk connective tissue | 1.42e-11 | 2 |
interstitial tissue | 1.42e-11 | 2 |
extraglomerular mesangium | 1.42e-11 | 2 |
kidney interstitium | 1.42e-11 | 2 |
juxtaglomerular apparatus | 1.42e-11 | 2 |
mesangium | 1.42e-11 | 2 |
lower digestive tract | 4.00e-10 | 5 |
cavitated compound organ | 1.32e-09 | 31 |
nephron epithelium | 2.03e-08 | 15 |
renal tubule | 2.03e-08 | 15 |
nephron tubule | 2.03e-08 | 15 |
nephron | 2.03e-08 | 15 |
uriniferous tubule | 2.03e-08 | 15 |
nephrogenic mesenchyme | 2.03e-08 | 15 |
excretory tube | 7.07e-08 | 16 |
kidney epithelium | 7.07e-08 | 16 |
cortex of kidney | 3.86e-07 | 12 |
renal parenchyma | 3.86e-07 | 12 |
vermiform appendix | 9.15e-07 | 1 |
caecum | 9.15e-07 | 1 |
midgut | 9.15e-07 | 1 |